Wall clock time and date at job start Wed Apr 1 2020 04:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99732 * 2 1 4 4 H 1.48494 * 109.47205 * 239.99962 * 3 2 1 5 5 H 1.48504 * 109.47220 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46902 * 120.00110 * 3 2 1 7 7 C 1.38814 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99685 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00035 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99995 * 180.02562 * 9 7 2 11 11 H 1.09010 * 109.57008 * 324.83663 * 10 9 7 12 12 C 1.53803 * 109.52013 * 204.68583 * 10 9 7 13 13 C 1.52457 * 109.41875 * 162.22036 * 12 10 9 14 14 C 1.53967 * 110.73327 * 113.72923 * 13 12 10 15 15 C 1.52886 * 109.71255 * 315.64651 * 14 13 12 16 16 C 1.53052 * 109.24045 * 287.11923 * 15 14 13 17 17 N 1.45341 * 108.62344 * 77.97956 * 16 15 14 18 18 C 1.34778 * 120.35377 * 223.25047 * 17 16 15 19 19 O 1.21560 * 119.99839 * 183.38272 * 18 17 16 20 20 C 1.47821 * 119.99827 * 3.37706 * 18 17 16 21 21 C 1.41578 * 120.36956 * 134.88246 * 20 18 17 22 22 C 1.34816 * 120.11381 * 180.02562 * 21 20 18 23 23 N 1.36062 * 120.82850 * 0.02562 * 22 21 20 24 24 N 1.40246 * 133.73257 * 180.02562 * 23 22 21 25 25 N 1.28967 * 107.02013 * 179.97438 * 24 23 22 26 26 N 1.28537 * 110.84436 * 359.97438 * 25 24 23 27 27 C 1.32613 * 110.18784 * 0.02562 * 26 25 24 28 28 C 1.38458 * 120.37702 * 314.68320 * 20 18 17 29 29 C 1.46960 * 119.29032 * 42.98043 * 17 16 15 30 30 H 0.96996 * 120.00000 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99685 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47863 * 282.20159 * 12 10 9 33 33 H 1.08998 * 109.47991 * 42.23741 * 12 10 9 34 34 H 1.09001 * 109.22071 * 234.04642 * 13 12 10 35 35 H 1.08995 * 109.22600 * 353.44473 * 13 12 10 36 36 H 1.08995 * 109.42922 * 75.71799 * 14 13 12 37 37 H 1.08994 * 109.42916 * 195.62205 * 14 13 12 38 38 H 1.09002 * 109.48359 * 47.08925 * 15 14 13 39 39 H 1.09000 * 109.47940 * 167.11321 * 15 14 13 40 40 H 1.08995 * 109.64793 * 318.13544 * 16 15 14 41 41 H 1.09002 * 109.48965 * 197.72583 * 16 15 14 42 42 H 1.08001 * 119.94425 * 0.02562 * 21 20 18 43 43 H 1.07998 * 119.58511 * 180.02562 * 22 21 20 44 44 H 1.07999 * 120.51523 * 359.92838 * 28 20 18 45 45 H 1.08993 * 109.53618 * 8.52773 * 29 17 16 46 46 H 1.09004 * 109.53560 * 128.69512 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9683 -3.5534 -0.5892 12 6 1.1749 -4.7607 -0.6039 13 6 2.0480 -5.9426 -1.0101 14 6 1.7309 -7.1769 -0.1460 15 6 1.6122 -6.7627 1.3209 16 6 3.0056 -6.4485 1.8706 17 7 3.4007 -5.1288 1.4071 18 6 4.6513 -4.9123 0.9538 19 8 4.9936 -3.7930 0.6256 20 6 5.6068 -6.0359 0.8560 21 6 6.4053 -6.1978 -0.3018 22 6 7.2748 -7.2247 -0.3858 23 7 7.3993 -8.1179 0.6330 24 7 8.1940 -9.2561 0.8328 25 7 7.8960 -9.7251 1.9966 26 7 6.9938 -9.0053 2.5625 27 6 6.6473 -7.9997 1.7704 28 6 5.7340 -6.9395 1.8974 29 6 2.4200 -4.0345 1.4324 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 0.4427 -5.0866 0.1349 33 1 0.6580 -4.3721 -1.4814 34 1 1.8643 -6.1812 -2.0577 35 1 3.0967 -5.6750 -0.8816 36 1 0.7903 -7.6182 -0.4755 37 1 2.5316 -7.9088 -0.2517 38 1 0.9811 -5.8774 1.3987 39 1 1.1684 -7.5770 1.8937 40 1 3.7174 -7.1918 1.5117 41 1 2.9782 -6.4618 2.9602 42 1 6.3178 -5.4974 -1.1193 43 1 7.8800 -7.3398 -1.2728 44 1 5.1382 -6.8329 2.7918 45 1 1.5242 -4.3600 1.9611 46 1 2.8501 -3.1714 1.9407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088359427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:41 Heat of formation + Delta-G solvation = 147.621981 kcal Electronic energy + Delta-G solvation = -31127.380963 eV Core-core repulsion = 27056.425349 eV Total energy + Delta-G solvation = -4070.955613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -43.76115 -40.92158 -38.90246 -37.60330 -35.36946 -34.39135 -33.98819 -32.52282 -32.17073 -31.00643 -29.81432 -27.85454 -26.46788 -25.68799 -25.06330 -23.78098 -23.19784 -22.86147 -21.09071 -20.34314 -19.58152 -18.88983 -17.74588 -17.43095 -17.23742 -17.07290 -16.09310 -15.99421 -15.76399 -15.43362 -14.64645 -14.54592 -14.27256 -13.86299 -13.78940 -13.61027 -13.45651 -13.18856 -12.93768 -12.87313 -12.85641 -12.53043 -12.29126 -12.17017 -11.74744 -11.56668 -11.43427 -11.16988 -11.05033 -10.89408 -10.80290 -10.58467 -10.55704 -10.37932 -10.26592 -10.07681 -9.76174 -9.64222 -9.08516 -9.03107 -8.46863 -7.00500 -5.78584 -3.07866 -0.30208 -0.00174 1.28567 1.72661 2.23876 2.66165 2.83493 3.29245 3.45433 3.49345 3.51507 3.57241 3.96712 4.09541 4.31429 4.49613 4.56016 4.61954 4.79532 4.84930 4.90763 5.01850 5.09064 5.14060 5.17918 5.24151 5.29884 5.40952 5.48878 5.53958 5.62945 5.67320 5.72174 5.83659 5.87808 5.93173 5.98486 6.04089 6.24885 6.30778 6.32644 6.51143 6.54414 6.74902 7.00991 7.34466 7.77460 7.96545 8.01453 8.40203 9.51862 10.05401 10.40342 11.43650 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016293 B = 0.003108 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.091637 B = 9006.060996 C = 9934.044251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.012 4.012 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.285 1.285 7 C -0.238 4.238 8 H 0.075 0.925 9 N -0.718 5.718 10 C 0.166 3.834 11 H 0.060 0.940 12 C -0.132 4.132 13 C -0.115 4.115 14 C -0.115 4.115 15 C -0.151 4.151 16 C 0.091 3.909 17 N -0.587 5.587 18 C 0.548 3.452 19 O -0.501 6.501 20 C -0.046 4.046 21 C -0.094 4.094 22 C 0.106 3.894 23 N -0.295 5.295 24 N -0.112 5.112 25 N -0.009 5.009 26 N -0.318 5.318 27 C 0.240 3.760 28 C -0.066 4.066 29 C 0.096 3.904 30 H 0.255 0.745 31 H 0.384 0.616 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.179 0.821 43 H 0.189 0.811 44 H 0.175 0.825 45 H 0.079 0.921 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.919 -18.413 0.414 20.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.208 4.208 3 Si 0.737 3.263 4 H -0.212 1.212 5 H -0.218 1.218 6 H -0.212 1.212 7 C -0.369 4.369 8 H 0.093 0.907 9 N -0.358 5.358 10 C 0.055 3.945 11 H 0.078 0.922 12 C -0.170 4.170 13 C -0.154 4.154 14 C -0.152 4.152 15 C -0.189 4.189 16 C -0.032 4.032 17 N -0.320 5.320 18 C 0.333 3.667 19 O -0.375 6.375 20 C -0.058 4.058 21 C -0.117 4.117 22 C -0.021 4.021 23 N -0.075 5.075 24 N -0.095 5.095 25 N -0.002 5.002 26 N -0.179 5.179 27 C -0.014 4.014 28 C -0.090 4.090 29 C -0.027 4.027 30 H 0.065 0.935 31 H 0.218 0.782 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.073 0.927 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.196 0.804 43 H 0.206 0.794 44 H 0.192 0.808 45 H 0.097 0.903 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 9.039 -18.996 0.656 21.047 hybrid contribution -0.201 1.569 -0.323 1.615 sum 8.838 -17.427 0.333 19.543 Atomic orbital electron populations 1.69650 1.05092 1.25796 1.57758 1.24737 0.95475 0.97693 1.02886 0.86279 0.78517 0.83482 0.78004 1.21232 1.21805 1.21214 1.19286 0.91271 0.83813 1.42492 0.90748 1.42386 1.05712 0.99651 1.88056 1.20673 0.95141 0.86167 0.92537 0.92177 1.22110 0.98450 0.95168 1.01243 1.21665 1.00358 0.94706 0.98630 1.21740 1.01246 0.97534 0.94730 1.22276 0.96787 1.03255 0.96555 1.21943 0.97599 0.84625 0.99049 1.47930 1.10881 1.11484 1.61685 1.17786 0.81858 0.87431 0.79597 1.90948 1.76577 1.22453 1.47560 1.20614 0.96579 0.94640 0.93988 1.21177 0.94071 0.97221 0.99253 1.21635 1.00135 0.88370 0.91939 1.49025 1.25338 1.19375 1.13781 1.82813 1.15951 0.96410 1.14349 1.77869 1.05217 1.17581 0.99515 1.75244 1.13522 1.04591 1.24556 1.22710 0.95653 0.97876 0.85117 1.20971 0.96643 0.90071 1.01323 1.22835 0.90142 0.87630 1.02129 0.93501 0.78210 0.91702 0.91603 0.92695 0.92346 0.91995 0.92675 0.88881 0.90922 0.90008 0.91135 0.80361 0.79418 0.80781 0.90315 0.90010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.42 13.06 55.49 0.72 -26.70 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 3 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.24 -6.42 9.90 -15.06 -0.15 -6.57 16 8 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 9 N -0.72 -16.87 5.13 -53.35 -0.27 -17.14 16 10 C 0.17 3.00 2.39 -67.85 -0.16 2.83 16 11 H 0.06 1.22 6.26 -51.92 -0.33 0.89 16 12 C -0.13 -1.90 4.97 -26.59 -0.13 -2.04 16 13 C -0.12 -1.33 5.40 -26.51 -0.14 -1.47 16 14 C -0.11 -1.04 5.75 -26.29 -0.15 -1.19 16 15 C -0.15 -1.30 5.45 -26.76 -0.15 -1.45 16 16 C 0.09 0.77 4.50 -4.64 -0.02 0.75 16 17 N -0.59 -7.00 1.69 -175.73 -0.30 -7.30 16 18 C 0.55 7.05 5.72 -12.34 -0.07 6.98 16 19 O -0.50 -8.75 15.89 5.31 0.08 -8.66 16 20 C -0.05 -0.43 5.11 -104.62 -0.53 -0.97 16 21 C -0.09 -0.68 9.67 -39.52 -0.38 -1.07 16 22 C 0.11 0.71 11.19 -16.89 -0.19 0.52 16 23 N -0.30 -2.95 3.94 -12.43 -0.05 -3.00 16 24 N -0.11 -1.36 13.98 60.35 0.84 -0.51 16 25 N -0.01 -0.12 13.35 60.35 0.81 0.69 16 26 N -0.32 -4.04 12.27 31.03 0.38 -3.66 16 27 C 0.24 2.54 8.02 -156.36 -1.25 1.29 16 28 C -0.07 -0.58 7.51 -38.65 -0.29 -0.87 16 29 C 0.10 1.50 4.75 -4.13 -0.02 1.48 16 30 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 31 H 0.38 9.55 7.80 -40.82 -0.32 9.23 16 32 H 0.06 0.87 5.47 -51.93 -0.28 0.58 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.71 5.38 -51.93 -0.28 0.43 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.45 7.85 -51.93 -0.41 0.04 16 38 H 0.09 0.96 3.35 -51.93 -0.17 0.78 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.60 4.56 -51.93 -0.24 0.37 16 41 H 0.07 0.50 7.99 -51.93 -0.41 0.08 16 42 H 0.18 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.19 0.59 8.06 -52.49 -0.42 0.17 16 44 H 0.17 1.22 6.56 -52.49 -0.34 0.87 16 45 H 0.08 1.11 6.07 -51.93 -0.32 0.79 16 46 H 0.08 1.56 8.03 -51.93 -0.42 1.14 16 LS Contribution 360.15 15.07 5.43 5.43 Total: -1.00 -33.36 360.15 -6.72 -40.08 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -5.60 Total: 5.67 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -3.74 Total: -2.19 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: 2.14 Total: -57.62 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.66 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.36 -6.72 -40.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088359427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.700 kcal (2) G-P(sol) polarization free energy of solvation -33.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds