Wall clock time and date at job start Wed Apr 1 2020 04:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86799 * 119.99732 * 2 1 4 4 H 1.48494 * 109.47205 * 239.99962 * 3 2 1 5 5 H 1.48504 * 109.47220 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46902 * 120.00110 * 3 2 1 7 7 C 1.38814 * 120.00052 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99685 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00035 * 0.02562 * 7 2 1 10 10 C 1.46493 * 119.99995 * 180.02562 * 9 7 2 11 11 H 1.09010 * 109.57008 * 324.83663 * 10 9 7 12 12 C 1.53803 * 109.52013 * 204.68583 * 10 9 7 13 13 C 1.52457 * 109.41875 * 162.22036 * 12 10 9 14 14 C 1.53967 * 110.73327 * 113.72923 * 13 12 10 15 15 C 1.52886 * 109.71255 * 315.64651 * 14 13 12 16 16 C 1.53052 * 109.24045 * 287.11923 * 15 14 13 17 17 N 1.45341 * 108.62344 * 77.97956 * 16 15 14 18 18 C 1.34778 * 120.35377 * 223.25047 * 17 16 15 19 19 O 1.21560 * 119.99839 * 183.38272 * 18 17 16 20 20 C 1.47821 * 119.99827 * 3.37706 * 18 17 16 21 21 C 1.41578 * 120.36956 * 134.88246 * 20 18 17 22 22 C 1.34816 * 120.11381 * 180.02562 * 21 20 18 23 23 N 1.36062 * 120.82850 * 0.02562 * 22 21 20 24 24 N 1.40246 * 133.73257 * 180.02562 * 23 22 21 25 25 N 1.28967 * 107.02013 * 179.97438 * 24 23 22 26 26 N 1.28537 * 110.84436 * 359.97438 * 25 24 23 27 27 C 1.32613 * 110.18784 * 0.02562 * 26 25 24 28 28 C 1.38458 * 120.37702 * 314.68320 * 20 18 17 29 29 C 1.46960 * 119.29032 * 42.98043 * 17 16 15 30 30 H 0.96996 * 120.00000 * 359.97438 * 1 2 3 31 31 H 0.96999 * 119.99685 * 0.02562 * 9 7 2 32 32 H 1.09000 * 109.47863 * 282.20159 * 12 10 9 33 33 H 1.08998 * 109.47991 * 42.23741 * 12 10 9 34 34 H 1.09001 * 109.22071 * 234.04642 * 13 12 10 35 35 H 1.08995 * 109.22600 * 353.44473 * 13 12 10 36 36 H 1.08995 * 109.42922 * 75.71799 * 14 13 12 37 37 H 1.08994 * 109.42916 * 195.62205 * 14 13 12 38 38 H 1.09002 * 109.48359 * 47.08925 * 15 14 13 39 39 H 1.09000 * 109.47940 * 167.11321 * 15 14 13 40 40 H 1.08995 * 109.64793 * 318.13544 * 16 15 14 41 41 H 1.09002 * 109.48965 * 197.72583 * 16 15 14 42 42 H 1.08001 * 119.94425 * 0.02562 * 21 20 18 43 43 H 1.07998 * 119.58511 * 180.02562 * 22 21 20 44 44 H 1.07999 * 120.51523 * 359.92838 * 28 20 18 45 45 H 1.08993 * 109.53618 * 8.52773 * 29 17 16 46 46 H 1.09004 * 109.53560 * 128.69512 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2851 2.7465 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 2.9683 -3.5534 -0.5892 12 6 1.1749 -4.7607 -0.6039 13 6 2.0480 -5.9426 -1.0101 14 6 1.7309 -7.1769 -0.1460 15 6 1.6122 -6.7627 1.3209 16 6 3.0056 -6.4485 1.8706 17 7 3.4007 -5.1288 1.4071 18 6 4.6513 -4.9123 0.9538 19 8 4.9936 -3.7930 0.6256 20 6 5.6068 -6.0359 0.8560 21 6 6.4053 -6.1978 -0.3018 22 6 7.2748 -7.2247 -0.3858 23 7 7.3993 -8.1179 0.6330 24 7 8.1940 -9.2561 0.8328 25 7 7.8960 -9.7251 1.9966 26 7 6.9938 -9.0053 2.5625 27 6 6.6473 -7.9997 1.7704 28 6 5.7340 -6.9395 1.8974 29 6 2.4200 -4.0345 1.4324 30 1 -0.4850 0.8400 0.0004 31 1 0.3556 -2.3881 -0.0002 32 1 0.4427 -5.0866 0.1349 33 1 0.6580 -4.3721 -1.4814 34 1 1.8643 -6.1812 -2.0577 35 1 3.0967 -5.6750 -0.8816 36 1 0.7903 -7.6182 -0.4755 37 1 2.5316 -7.9088 -0.2517 38 1 0.9811 -5.8774 1.3987 39 1 1.1684 -7.5770 1.8937 40 1 3.7174 -7.1918 1.5117 41 1 2.9782 -6.4618 2.9602 42 1 6.3178 -5.4974 -1.1193 43 1 7.8800 -7.3398 -1.2728 44 1 5.1382 -6.8329 2.7918 45 1 1.5242 -4.3600 1.9611 46 1 2.8501 -3.1714 1.9407 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088359427.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:40 Heat of formation + Delta-G solvation = 125.765036 kcal Electronic energy + Delta-G solvation = -31128.328751 eV Core-core repulsion = 27056.425349 eV Total energy + Delta-G solvation = -4071.903402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.57446 -41.92947 -39.76115 -38.68115 -36.76971 -35.47792 -34.92500 -33.88858 -33.27818 -31.80611 -31.29184 -29.11146 -27.49689 -26.61017 -25.93515 -25.42307 -24.01608 -23.87338 -22.40581 -21.30602 -20.55738 -19.75761 -19.08561 -18.52714 -18.28366 -18.05537 -17.20985 -17.11814 -16.67474 -16.25551 -16.18112 -15.55716 -15.35172 -15.20518 -15.15530 -14.55574 -14.29510 -14.27039 -14.15158 -14.02411 -13.69734 -13.58599 -13.21626 -13.19139 -13.01171 -12.81555 -12.77975 -12.43212 -12.27998 -12.23947 -12.03416 -11.95288 -11.75124 -11.44336 -11.40487 -11.37967 -11.31094 -11.03981 -10.86405 -9.76490 -9.68995 -8.92941 -7.93428 -5.20863 -1.03703 -0.74878 0.56743 0.91329 1.33815 1.46481 1.48122 1.54613 1.71282 1.97747 2.47924 2.57738 2.82391 3.24653 3.36207 3.40644 3.63366 3.71466 3.88403 3.96101 4.03357 4.07370 4.09078 4.19618 4.27442 4.29415 4.43168 4.44676 4.52264 4.62077 4.67228 4.74951 4.76617 4.81427 4.86910 4.94579 5.05104 5.17393 5.21591 5.26455 5.34774 5.39742 5.45423 5.55740 5.56722 5.70013 6.28418 6.35615 6.98527 7.11151 7.36803 8.10967 8.34961 9.29097 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016293 B = 0.003108 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.091637 B = 9006.060996 C = 9934.044251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.069 4.069 3 Si 0.962 3.038 4 H -0.282 1.282 5 H -0.292 1.292 6 H -0.283 1.283 7 C -0.231 4.231 8 H 0.064 0.936 9 N -0.730 5.730 10 C 0.166 3.834 11 H 0.035 0.965 12 C -0.122 4.122 13 C -0.111 4.111 14 C -0.110 4.110 15 C -0.150 4.150 16 C 0.085 3.915 17 N -0.580 5.580 18 C 0.550 3.450 19 O -0.555 6.555 20 C -0.045 4.045 21 C -0.089 4.089 22 C 0.120 3.880 23 N -0.295 5.295 24 N -0.123 5.123 25 N -0.029 5.029 26 N -0.337 5.337 27 C 0.234 3.766 28 C -0.054 4.054 29 C 0.112 3.888 30 H 0.251 0.749 31 H 0.376 0.624 32 H 0.080 0.920 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.094 0.906 42 H 0.193 0.807 43 H 0.228 0.772 44 H 0.192 0.808 45 H 0.098 0.902 46 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.571 -20.606 0.369 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.262 4.262 3 Si 0.792 3.208 4 H -0.208 1.208 5 H -0.218 1.218 6 H -0.209 1.209 7 C -0.363 4.363 8 H 0.082 0.918 9 N -0.370 5.370 10 C 0.057 3.943 11 H 0.053 0.947 12 C -0.160 4.160 13 C -0.149 4.149 14 C -0.147 4.147 15 C -0.187 4.187 16 C -0.037 4.037 17 N -0.311 5.311 18 C 0.337 3.663 19 O -0.433 6.433 20 C -0.057 4.057 21 C -0.113 4.113 22 C -0.007 4.007 23 N -0.074 5.074 24 N -0.106 5.106 25 N -0.022 5.022 26 N -0.199 5.199 27 C -0.019 4.019 28 C -0.077 4.077 29 C -0.012 4.012 30 H 0.060 0.940 31 H 0.208 0.792 32 H 0.098 0.902 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.112 0.888 42 H 0.210 0.790 43 H 0.244 0.756 44 H 0.209 0.791 45 H 0.116 0.884 46 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 9.718 -21.271 0.625 23.394 hybrid contribution -0.374 2.211 -0.361 2.271 sum 9.344 -19.060 0.264 21.229 Atomic orbital electron populations 1.69775 1.06175 1.25968 1.59700 1.25398 0.96285 1.00505 1.03995 0.85378 0.77355 0.80074 0.77983 1.20835 1.21848 1.20910 1.19436 0.90923 0.85361 1.40621 0.91833 1.42512 1.05415 1.00707 1.88350 1.20807 0.94304 0.85267 0.93941 0.94720 1.22005 0.98488 0.95011 1.00471 1.21613 0.99067 0.94574 0.99687 1.21727 1.02394 0.96285 0.94285 1.22270 0.96316 1.03411 0.96741 1.22292 0.98173 0.82649 1.00565 1.47847 1.10063 1.12021 1.61218 1.18211 0.82271 0.87538 0.78263 1.90930 1.77671 1.24851 1.49878 1.20299 0.96445 0.93648 0.95341 1.21354 0.93494 0.97505 0.98931 1.22253 0.99565 0.86791 0.92052 1.49158 1.24764 1.19223 1.14287 1.82735 1.16548 0.97221 1.14136 1.77849 1.05902 1.18371 1.00109 1.75152 1.13902 1.05363 1.25442 1.22773 0.96045 0.97883 0.85215 1.21027 0.96176 0.89007 1.01534 1.22224 0.91400 0.87879 0.99707 0.94034 0.79200 0.90170 0.93711 0.92143 0.93064 0.91056 0.90925 0.90695 0.88150 0.88174 0.88784 0.78979 0.75591 0.79058 0.88363 0.94025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.07 13.06 21.65 0.28 -57.79 16 2 C -0.07 -3.98 5.50 84.86 0.47 -3.51 16 3 Si 0.96 46.87 29.55 68.60 2.03 48.90 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 5 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 6 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 7 C -0.23 -12.91 9.90 84.03 0.83 -12.08 16 8 H 0.06 3.63 7.83 -2.91 -0.02 3.60 16 9 N -0.73 -35.53 5.13 -322.70 -1.65 -37.18 16 10 C 0.17 6.13 2.39 45.05 0.11 6.24 16 11 H 0.03 1.46 6.26 -2.38 -0.01 1.45 16 12 C -0.12 -3.47 4.97 30.68 0.15 -3.32 16 13 C -0.11 -2.35 5.40 30.74 0.17 -2.18 16 14 C -0.11 -1.57 5.75 30.88 0.18 -1.39 16 15 C -0.15 -2.02 5.45 30.57 0.17 -1.86 16 16 C 0.08 1.15 4.50 86.61 0.39 1.54 16 17 N -0.58 -13.06 1.69 -828.14 -1.40 -14.46 16 18 C 0.55 13.67 5.72 86.78 0.50 14.16 16 19 O -0.56 -19.78 15.89 -3.90 -0.06 -19.84 16 20 C -0.05 -0.75 5.11 -19.87 -0.10 -0.85 16 21 C -0.09 -1.06 9.67 22.31 0.22 -0.84 16 22 C 0.12 1.19 11.19 83.25 0.93 2.12 16 23 N -0.29 -5.11 3.94 -193.24 -0.76 -5.87 16 24 N -0.12 -2.76 13.98 37.02 0.52 -2.24 16 25 N -0.03 -0.75 13.35 37.02 0.49 -0.26 16 26 N -0.34 -8.00 12.27 -55.73 -0.68 -8.69 16 27 C 0.23 4.38 8.02 134.05 1.07 5.46 16 28 C -0.05 -0.78 7.51 22.88 0.17 -0.61 16 29 C 0.11 3.52 4.75 86.07 0.41 3.93 16 30 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 31 H 0.38 19.33 7.80 -92.71 -0.72 18.61 16 32 H 0.08 2.04 5.47 -2.39 -0.01 2.03 16 33 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.16 5.38 -2.39 -0.01 1.15 16 36 H 0.07 0.94 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.85 7.85 -2.39 -0.02 0.83 16 38 H 0.07 1.33 3.35 -2.39 -0.01 1.32 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.10 1.06 4.56 -2.39 -0.01 1.05 16 41 H 0.09 0.93 7.99 -2.39 -0.02 0.91 16 42 H 0.19 1.81 8.06 -2.91 -0.02 1.79 16 43 H 0.23 0.42 8.06 -2.91 -0.02 0.40 16 44 H 0.19 2.05 6.56 -2.91 -0.02 2.03 16 45 H 0.10 2.69 6.07 -2.39 -0.01 2.67 16 46 H 0.04 1.65 8.03 -2.39 -0.02 1.63 16 Total: -1.00 -76.45 360.15 4.75 -71.71 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: 0.33 Total: 18.93 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: 5.66 Total: 6.80 kcal Atomic # 7 Polarization: -123.29 SS G_CDS: -3.21 Total: -126.49 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.06 Total: -19.84 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 2.03 Total: 48.90 kcal Total: -76.45 4.75 -71.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088359427.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 197.472 kcal (2) G-P(sol) polarization free energy of solvation -76.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.707 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds