Wall clock time and date at job start Wed Apr 1 2020 04:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99861 * 2 1 4 4 H 1.48496 * 109.47039 * 269.99786 * 3 2 1 5 5 H 1.48502 * 109.47259 * 29.99535 * 3 2 1 6 6 H 1.48501 * 109.46831 * 149.99908 * 3 2 1 7 7 C 1.38809 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00105 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 0.27668 * 7 2 1 10 10 C 1.46494 * 119.99926 * 179.72701 * 9 7 2 11 11 H 1.08997 * 109.49068 * 34.96288 * 10 9 7 12 12 C 1.52873 * 109.48713 * 155.00262 * 10 9 7 13 13 C 1.53953 * 109.72792 * 192.85845 * 12 10 9 14 14 C 1.52451 * 110.72757 * 44.36288 * 13 12 10 15 15 C 1.53802 * 109.40698 * 246.26615 * 14 13 12 16 16 C 1.52339 * 109.16042 * 77.83765 * 15 14 13 17 17 N 1.46958 * 109.09766 * 287.30713 * 16 15 14 18 18 C 1.34776 * 120.35950 * 291.66038 * 17 16 15 19 19 O 1.21560 * 120.00312 * 356.39709 * 18 17 16 20 20 C 1.47832 * 119.99771 * 176.39453 * 18 17 16 21 21 C 1.41576 * 120.37351 * 225.75348 * 20 18 17 22 22 C 1.34813 * 120.11460 * 179.97438 * 21 20 18 23 23 N 1.36063 * 120.82617 * 359.97214 * 22 21 20 24 24 N 1.40252 * 133.72823 * 180.02562 * 23 22 21 25 25 N 1.28972 * 107.01606 * 179.97438 * 24 23 22 26 26 N 1.28538 * 110.84686 * 359.97438 * 25 24 23 27 27 C 1.32619 * 110.18429 * 0.02562 * 26 25 24 28 28 C 1.38461 * 120.37103 * 45.47132 * 20 18 17 29 29 C 1.45324 * 119.27151 * 111.63523 * 17 16 15 30 30 H 0.96996 * 120.00428 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99755 * 359.72349 * 9 7 2 32 32 H 1.09005 * 109.42619 * 312.93474 * 12 10 9 33 33 H 1.08995 * 109.43021 * 72.83258 * 12 10 9 34 34 H 1.09008 * 109.23181 * 164.67795 * 13 12 10 35 35 H 1.09002 * 109.23086 * 284.03773 * 13 12 10 36 36 H 1.09007 * 109.47793 * 6.24545 * 14 13 12 37 37 H 1.09000 * 109.48710 * 126.28234 * 14 13 12 38 38 H 1.09009 * 109.52150 * 197.73778 * 15 14 13 39 39 H 1.08991 * 109.52685 * 317.92946 * 15 14 13 40 40 H 1.09004 * 109.53367 * 47.19575 * 16 15 14 41 41 H 1.09001 * 109.53322 * 167.41843 * 16 15 14 42 42 H 1.08000 * 119.93950 * 359.97438 * 21 20 18 43 43 H 1.08002 * 119.58815 * 180.02562 * 22 21 20 44 44 H 1.07997 * 120.51953 * 0.02562 * 28 20 18 45 45 H 1.09007 * 109.67565 * 196.91935 * 29 17 16 46 46 H 1.08994 * 109.67714 * 76.38788 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 -0.0047 10 6 2.0580 -3.6567 -0.0101 11 1 2.9691 -3.5532 0.5792 12 6 1.1818 -4.7541 0.5940 13 6 2.0379 -5.9993 0.8888 14 6 3.3548 -5.6050 1.5479 15 6 4.5193 -5.9284 0.5966 16 6 4.5980 -4.8541 -0.4807 17 7 3.4783 -5.0285 -1.4163 18 6 3.4320 -6.1012 -2.2310 19 8 4.3511 -6.8967 -2.2413 20 6 2.2634 -6.3103 -3.1119 21 6 1.6599 -7.5873 -3.2094 22 6 0.5941 -7.7721 -4.0140 23 7 0.0826 -6.7421 -4.7412 24 7 -0.9879 -6.6277 -5.6401 25 7 -1.0175 -5.4011 -6.0376 26 7 -0.0780 -4.7188 -5.4862 27 6 0.6338 -5.4911 -4.6766 28 6 1.7433 -5.2582 -3.8465 29 6 2.4213 -4.0318 -1.4530 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0047 32 1 0.7360 -4.3929 1.5209 33 1 0.3922 -5.0164 -0.1100 34 1 1.4878 -6.6636 1.5555 35 1 2.2461 -6.5212 -0.0452 36 1 3.3477 -4.5365 1.7637 37 1 3.4782 -6.1627 2.4762 38 1 5.4533 -5.9501 1.1583 39 1 4.3505 -6.8993 0.1311 40 1 4.5366 -3.8690 -0.0182 41 1 5.5410 -4.9467 -1.0195 42 1 2.0541 -8.4148 -2.6382 43 1 0.1401 -8.7497 -4.0816 44 1 2.1851 -4.2747 -3.7844 45 1 1.5464 -4.4432 -1.9567 46 1 2.7695 -3.1470 -1.9856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088359428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:47 Heat of formation + Delta-G solvation = 145.275536 kcal Electronic energy + Delta-G solvation = -31450.510385 eV Core-core repulsion = 27379.453022 eV Total energy + Delta-G solvation = -4071.057363 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.57776 -40.90653 -38.79202 -37.68480 -34.84857 -34.69541 -33.87036 -32.49055 -32.22910 -30.92033 -30.01465 -27.52204 -26.40492 -25.58949 -24.96744 -23.85653 -23.15706 -22.49975 -21.63077 -20.32000 -19.25947 -18.80196 -17.65548 -17.37828 -17.14973 -17.03896 -16.14686 -15.89033 -15.64990 -15.36262 -14.62524 -14.39250 -14.15335 -13.99524 -13.74303 -13.55372 -13.33407 -13.25046 -13.01451 -12.74643 -12.67666 -12.50647 -12.31789 -12.05866 -11.60144 -11.55681 -11.30987 -11.21166 -10.96376 -10.92044 -10.81953 -10.58234 -10.47946 -10.42662 -10.30117 -10.12503 -9.89627 -9.74766 -9.09789 -8.83538 -8.51141 -7.13087 -5.89612 -3.20961 -0.14986 0.15289 1.45338 1.89092 2.29724 2.68767 2.92819 3.36348 3.41044 3.42673 3.43932 3.72317 4.07928 4.20608 4.48199 4.52053 4.64782 4.80062 4.94428 4.97274 4.98735 5.17448 5.23827 5.26957 5.29494 5.31972 5.42766 5.50073 5.55156 5.58147 5.65466 5.71659 5.78914 5.84442 5.93005 6.02732 6.04083 6.10053 6.16374 6.26477 6.38060 6.43645 6.50905 6.62986 6.79758 7.33827 7.56136 7.91746 8.16671 8.27450 9.39481 9.93306 10.27336 11.32099 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008867 B = 0.004494 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.078019 B = 6229.337465 C = 8309.750101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C -0.005 4.005 3 Si 0.905 3.095 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.251 4.251 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.158 3.842 11 H 0.071 0.929 12 C -0.125 4.125 13 C -0.113 4.113 14 C -0.129 4.129 15 C -0.135 4.135 16 C 0.115 3.885 17 N -0.580 5.580 18 C 0.556 3.444 19 O -0.531 6.531 20 C -0.059 4.059 21 C -0.095 4.095 22 C 0.103 3.897 23 N -0.295 5.295 24 N -0.114 5.114 25 N -0.007 5.007 26 N -0.308 5.308 27 C 0.241 3.759 28 C -0.050 4.050 29 C 0.063 3.937 30 H 0.257 0.743 31 H 0.385 0.615 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.079 0.921 37 H 0.057 0.943 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.073 0.927 42 H 0.175 0.825 43 H 0.187 0.813 44 H 0.178 0.822 45 H 0.077 0.923 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.912 -17.610 -1.724 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.202 4.202 3 Si 0.736 3.264 4 H -0.215 1.215 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.382 4.382 8 H 0.089 0.911 9 N -0.358 5.358 10 C 0.047 3.953 11 H 0.088 0.912 12 C -0.163 4.163 13 C -0.151 4.151 14 C -0.166 4.166 15 C -0.174 4.174 16 C -0.007 4.007 17 N -0.311 5.311 18 C 0.343 3.657 19 O -0.409 6.409 20 C -0.070 4.070 21 C -0.118 4.118 22 C -0.024 4.024 23 N -0.076 5.076 24 N -0.097 5.097 25 N 0.000 5.000 26 N -0.168 5.168 27 C -0.013 4.013 28 C -0.073 4.073 29 C -0.063 4.063 30 H 0.067 0.933 31 H 0.219 0.781 32 H 0.086 0.914 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.114 0.886 41 H 0.091 0.909 42 H 0.192 0.808 43 H 0.204 0.796 44 H 0.195 0.805 45 H 0.095 0.905 46 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 5.266 -17.474 -2.781 18.461 hybrid contribution 0.492 0.652 0.471 0.943 sum 5.758 -16.822 -2.310 17.930 Atomic orbital electron populations 1.69650 1.05185 1.26005 1.56496 1.24755 0.95449 0.97788 1.02210 0.86237 0.78697 0.83833 0.77657 1.21527 1.21718 1.20674 1.19167 0.90905 0.83890 1.44189 0.91100 1.42417 1.05895 0.99466 1.88024 1.20898 0.96044 0.86661 0.91694 0.91182 1.22042 0.97951 0.95035 1.01282 1.21657 0.95907 0.97561 0.99997 1.21861 0.94208 1.02715 0.97815 1.22034 0.98906 0.99714 0.96698 1.21638 0.88430 1.00439 0.90196 1.47890 1.24284 1.22222 1.36675 1.17820 0.85544 0.82094 0.80288 1.90811 1.37119 1.44951 1.68020 1.20387 0.96191 0.93391 0.97080 1.21031 0.94283 0.97755 0.98779 1.21557 0.95738 0.92530 0.92590 1.49039 1.20813 1.09562 1.28138 1.82785 1.04451 1.14271 1.08156 1.77894 1.11672 0.96836 1.13637 1.75322 1.05115 1.24441 1.11960 1.22713 0.97464 0.82628 0.98520 1.21101 0.91768 1.01471 0.92980 1.23282 0.89029 0.90528 1.03418 0.93267 0.78070 0.91358 0.92800 0.92861 0.92626 0.90245 0.92440 0.91098 0.90809 0.88550 0.90902 0.80788 0.79605 0.80471 0.90504 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.45 13.06 55.49 0.72 -25.73 16 2 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 3 Si 0.91 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 7 C -0.25 -6.22 9.88 -15.06 -0.15 -6.37 16 8 H 0.07 1.69 7.83 -52.49 -0.41 1.28 16 9 N -0.72 -15.74 5.12 -53.27 -0.27 -16.01 16 10 C 0.16 2.57 2.29 -67.77 -0.16 2.41 16 11 H 0.07 1.14 3.29 -51.93 -0.17 0.97 16 12 C -0.12 -1.77 5.22 -26.30 -0.14 -1.91 16 13 C -0.11 -1.31 5.40 -26.52 -0.14 -1.45 16 14 C -0.13 -1.42 5.49 -26.59 -0.15 -1.57 16 15 C -0.14 -1.43 5.56 -26.65 -0.15 -1.57 16 16 C 0.11 1.32 5.17 -4.13 -0.02 1.30 16 17 N -0.58 -7.09 1.68 -175.49 -0.30 -7.39 16 18 C 0.56 6.75 5.71 -12.34 -0.07 6.68 16 19 O -0.53 -7.50 15.90 5.31 0.08 -7.41 16 20 C -0.06 -0.62 5.11 -104.62 -0.53 -1.16 16 21 C -0.09 -0.74 9.67 -39.52 -0.38 -1.13 16 22 C 0.10 0.81 11.19 -16.89 -0.19 0.62 16 23 N -0.30 -3.58 3.94 -12.43 -0.05 -3.63 16 24 N -0.11 -1.63 13.98 60.35 0.84 -0.79 16 25 N -0.01 -0.12 13.35 60.35 0.81 0.68 16 26 N -0.31 -5.04 12.27 31.03 0.38 -4.66 16 27 C 0.24 3.30 8.02 -156.36 -1.25 2.05 16 28 C -0.05 -0.59 7.51 -38.65 -0.29 -0.88 16 29 C 0.06 0.89 4.13 -4.44 -0.02 0.87 16 30 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 31 H 0.39 9.30 7.80 -40.82 -0.32 8.98 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.77 7.87 -51.93 -0.41 0.36 16 34 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.06 0.64 5.38 -51.93 -0.28 0.36 16 36 H 0.08 1.00 5.47 -51.93 -0.28 0.72 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 39 H 0.07 0.85 6.31 -51.93 -0.33 0.52 16 40 H 0.10 1.16 6.07 -51.93 -0.32 0.84 16 41 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 42 H 0.17 0.94 8.06 -52.49 -0.42 0.51 16 43 H 0.19 0.74 8.06 -52.49 -0.42 0.32 16 44 H 0.18 2.05 6.56 -52.49 -0.34 1.71 16 45 H 0.08 1.06 4.58 -51.92 -0.24 0.82 16 46 H 0.08 1.29 7.94 -51.93 -0.41 0.88 16 LS Contribution 360.18 15.07 5.43 5.43 Total: -1.00 -31.18 360.18 -6.71 -37.89 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -5.60 Total: 7.87 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -3.73 Total: -2.33 kcal Atomic # 7 Polarization: -59.65 SS G_CDS: 2.14 Total: -57.52 kcal Atomic # 8 Polarization: -7.50 SS G_CDS: 0.08 Total: -7.41 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.18 -6.71 -37.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088359428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.162 kcal (2) G-P(sol) polarization free energy of solvation -31.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds