Wall clock time and date at job start Wed Apr 1 2020 04:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86800 * 119.99861 * 2 1 4 4 H 1.48496 * 109.47039 * 269.99786 * 3 2 1 5 5 H 1.48502 * 109.47259 * 29.99535 * 3 2 1 6 6 H 1.48501 * 109.46831 * 149.99908 * 3 2 1 7 7 C 1.38809 * 120.00040 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00105 * 180.02562 * 7 2 1 9 9 N 1.36945 * 119.99936 * 0.27668 * 7 2 1 10 10 C 1.46494 * 119.99926 * 179.72701 * 9 7 2 11 11 H 1.08997 * 109.49068 * 34.96288 * 10 9 7 12 12 C 1.52873 * 109.48713 * 155.00262 * 10 9 7 13 13 C 1.53953 * 109.72792 * 192.85845 * 12 10 9 14 14 C 1.52451 * 110.72757 * 44.36288 * 13 12 10 15 15 C 1.53802 * 109.40698 * 246.26615 * 14 13 12 16 16 C 1.52339 * 109.16042 * 77.83765 * 15 14 13 17 17 N 1.46958 * 109.09766 * 287.30713 * 16 15 14 18 18 C 1.34776 * 120.35950 * 291.66038 * 17 16 15 19 19 O 1.21560 * 120.00312 * 356.39709 * 18 17 16 20 20 C 1.47832 * 119.99771 * 176.39453 * 18 17 16 21 21 C 1.41576 * 120.37351 * 225.75348 * 20 18 17 22 22 C 1.34813 * 120.11460 * 179.97438 * 21 20 18 23 23 N 1.36063 * 120.82617 * 359.97214 * 22 21 20 24 24 N 1.40252 * 133.72823 * 180.02562 * 23 22 21 25 25 N 1.28972 * 107.01606 * 179.97438 * 24 23 22 26 26 N 1.28538 * 110.84686 * 359.97438 * 25 24 23 27 27 C 1.32619 * 110.18429 * 0.02562 * 26 25 24 28 28 C 1.38461 * 120.37103 * 45.47132 * 20 18 17 29 29 C 1.45324 * 119.27151 * 111.63523 * 17 16 15 30 30 H 0.96996 * 120.00428 * 0.02562 * 1 2 3 31 31 H 0.97001 * 119.99755 * 359.72349 * 9 7 2 32 32 H 1.09005 * 109.42619 * 312.93474 * 12 10 9 33 33 H 1.08995 * 109.43021 * 72.83258 * 12 10 9 34 34 H 1.09008 * 109.23181 * 164.67795 * 13 12 10 35 35 H 1.09002 * 109.23086 * 284.03773 * 13 12 10 36 36 H 1.09007 * 109.47793 * 6.24545 * 14 13 12 37 37 H 1.09000 * 109.48710 * 126.28234 * 14 13 12 38 38 H 1.09009 * 109.52150 * 197.73778 * 15 14 13 39 39 H 1.08991 * 109.52685 * 317.92946 * 15 14 13 40 40 H 1.09004 * 109.53367 * 47.19575 * 16 15 14 41 41 H 1.09001 * 109.53322 * 167.41843 * 16 15 14 42 42 H 1.08000 * 119.93950 * 359.97438 * 21 20 18 43 43 H 1.08002 * 119.58815 * 180.02562 * 22 21 20 44 44 H 1.07997 * 120.51953 * 0.02562 * 28 20 18 45 45 H 1.09007 * 109.67565 * 196.91935 * 29 17 16 46 46 H 1.08994 * 109.67714 * 76.38788 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6527 0.6999 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3255 -2.3881 -0.0047 10 6 2.0580 -3.6567 -0.0101 11 1 2.9691 -3.5532 0.5792 12 6 1.1818 -4.7541 0.5940 13 6 2.0379 -5.9993 0.8888 14 6 3.3548 -5.6050 1.5479 15 6 4.5193 -5.9284 0.5966 16 6 4.5980 -4.8541 -0.4807 17 7 3.4783 -5.0285 -1.4163 18 6 3.4320 -6.1012 -2.2310 19 8 4.3511 -6.8967 -2.2413 20 6 2.2634 -6.3103 -3.1119 21 6 1.6599 -7.5873 -3.2094 22 6 0.5941 -7.7721 -4.0140 23 7 0.0826 -6.7421 -4.7412 24 7 -0.9879 -6.6277 -5.6401 25 7 -1.0175 -5.4011 -6.0376 26 7 -0.0780 -4.7188 -5.4862 27 6 0.6338 -5.4911 -4.6766 28 6 1.7433 -5.2582 -3.8465 29 6 2.4213 -4.0318 -1.4530 30 1 -0.4850 0.8400 -0.0004 31 1 0.3555 -2.3881 -0.0047 32 1 0.7360 -4.3929 1.5209 33 1 0.3922 -5.0164 -0.1100 34 1 1.4878 -6.6636 1.5555 35 1 2.2461 -6.5212 -0.0452 36 1 3.3477 -4.5365 1.7637 37 1 3.4782 -6.1627 2.4762 38 1 5.4533 -5.9501 1.1583 39 1 4.3505 -6.8993 0.1311 40 1 4.5366 -3.8690 -0.0182 41 1 5.5410 -4.9467 -1.0195 42 1 2.0541 -8.4148 -2.6382 43 1 0.1401 -8.7497 -4.0816 44 1 2.1851 -4.2747 -3.7844 45 1 1.5464 -4.4432 -1.9567 46 1 2.7695 -3.1470 -1.9856 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088359428.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:46 Heat of formation + Delta-G solvation = 125.913311 kcal Electronic energy + Delta-G solvation = -31451.349994 eV Core-core repulsion = 27379.453022 eV Total energy + Delta-G solvation = -4071.896972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.58378 -41.94740 -39.75698 -38.80317 -36.24312 -35.77919 -34.89831 -33.92297 -33.28759 -32.00008 -31.36142 -28.81606 -27.47923 -26.68376 -25.95947 -25.40834 -24.12436 -23.62162 -22.77041 -21.35892 -20.39504 -19.74244 -19.18463 -18.52154 -18.22421 -18.05836 -17.15233 -17.10454 -16.70193 -16.39426 -16.05209 -15.57118 -15.29155 -15.08167 -14.99073 -14.80732 -14.40601 -14.29002 -14.10480 -13.95374 -13.71850 -13.64369 -13.37775 -13.04754 -12.99624 -12.88091 -12.62058 -12.51268 -12.28619 -12.25410 -12.14151 -11.90794 -11.76651 -11.50573 -11.41474 -11.37351 -11.21582 -11.14666 -10.73993 -9.77930 -9.63626 -8.96570 -7.91633 -5.20168 -1.03756 -0.75661 0.57685 0.90552 1.30017 1.50176 1.51408 1.58544 1.71947 1.99082 2.45879 2.58844 2.79358 3.19949 3.37366 3.42596 3.64635 3.77207 3.84470 3.88381 4.06955 4.07607 4.12187 4.20582 4.24170 4.28746 4.42704 4.44243 4.55606 4.57075 4.65991 4.69208 4.79084 4.81590 4.85958 5.00206 5.01279 5.16813 5.23415 5.26072 5.34240 5.36841 5.44514 5.46934 5.57356 5.69765 6.26882 6.29966 6.89423 7.10073 7.37184 8.11621 8.32941 9.31508 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.008867 B = 0.004494 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3157.078019 B = 6229.337465 C = 8309.750101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.070 4.070 3 Si 0.961 3.039 4 H -0.292 1.292 5 H -0.302 1.302 6 H -0.265 1.265 7 C -0.232 4.232 8 H 0.081 0.919 9 N -0.731 5.731 10 C 0.155 3.845 11 H 0.076 0.924 12 C -0.118 4.118 13 C -0.105 4.105 14 C -0.127 4.127 15 C -0.126 4.126 16 C 0.109 3.891 17 N -0.577 5.577 18 C 0.564 3.436 19 O -0.543 6.543 20 C -0.050 4.050 21 C -0.082 4.082 22 C 0.114 3.886 23 N -0.293 5.293 24 N -0.122 5.122 25 N -0.032 5.032 26 N -0.348 5.348 27 C 0.229 3.771 28 C -0.064 4.064 29 C 0.081 3.919 30 H 0.248 0.752 31 H 0.372 0.628 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.212 0.788 43 H 0.234 0.766 44 H 0.171 0.829 45 H 0.082 0.918 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.775 -20.815 -0.804 22.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.263 4.263 3 Si 0.792 3.208 4 H -0.219 1.219 5 H -0.229 1.229 6 H -0.190 1.190 7 C -0.364 4.364 8 H 0.099 0.901 9 N -0.370 5.370 10 C 0.046 3.954 11 H 0.093 0.907 12 C -0.157 4.157 13 C -0.143 4.143 14 C -0.164 4.164 15 C -0.164 4.164 16 C -0.012 4.012 17 N -0.308 5.308 18 C 0.351 3.649 19 O -0.421 6.421 20 C -0.062 4.062 21 C -0.105 4.105 22 C -0.012 4.012 23 N -0.073 5.073 24 N -0.105 5.105 25 N -0.024 5.024 26 N -0.209 5.209 27 C -0.024 4.024 28 C -0.088 4.088 29 C -0.045 4.045 30 H 0.057 0.943 31 H 0.203 0.797 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.107 0.893 39 H 0.090 0.910 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.229 0.771 43 H 0.250 0.750 44 H 0.189 0.811 45 H 0.100 0.900 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.194 -20.729 -1.859 22.021 hybrid contribution 0.053 1.443 0.270 1.469 sum 7.247 -19.286 -1.589 20.664 Atomic orbital electron populations 1.69800 1.06635 1.25831 1.59610 1.25442 0.96086 1.00787 1.03966 0.85316 0.78007 0.80322 0.77198 1.21926 1.22938 1.19008 1.19565 0.91453 0.84812 1.40563 0.90071 1.42605 1.05450 1.00798 1.88153 1.21134 0.96109 0.85151 0.93039 0.90683 1.21949 0.97980 0.95505 1.00219 1.21614 0.95812 0.96129 1.00754 1.21835 0.94106 1.01792 0.98691 1.21972 0.99526 0.98792 0.96141 1.21764 0.88287 1.00647 0.90502 1.47796 1.23914 1.21868 1.37175 1.17862 0.85611 0.81498 0.79965 1.90819 1.37651 1.45261 1.68395 1.20465 0.95399 0.94340 0.95976 1.21480 0.93441 0.97280 0.98289 1.22499 0.95061 0.93123 0.90538 1.49188 1.20128 1.10024 1.27913 1.82644 1.05337 1.13651 1.08861 1.77838 1.12382 0.97573 1.14654 1.75189 1.06172 1.25974 1.13588 1.22728 0.97815 0.83146 0.98662 1.21010 0.91971 1.01889 0.93914 1.22796 0.89793 0.90572 1.01314 0.94278 0.79686 0.92954 0.92904 0.91301 0.91978 0.91987 0.90800 0.89332 0.91030 0.89291 0.90335 0.77101 0.74973 0.81148 0.89970 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.15 13.06 21.65 0.28 -56.86 16 2 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 3 Si 0.96 44.12 29.55 68.60 2.03 46.15 16 4 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 5 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 7 C -0.23 -11.60 9.88 84.03 0.83 -10.77 16 8 H 0.08 3.82 7.83 -2.91 -0.02 3.79 16 9 N -0.73 -32.50 5.12 -322.44 -1.65 -34.16 16 10 C 0.15 4.93 2.29 45.10 0.10 5.04 16 11 H 0.08 2.37 3.29 -2.39 -0.01 2.36 16 12 C -0.12 -3.22 5.22 30.87 0.16 -3.06 16 13 C -0.11 -2.12 5.40 30.73 0.17 -1.96 16 14 C -0.13 -2.44 5.49 30.68 0.17 -2.27 16 15 C -0.13 -2.25 5.56 30.65 0.17 -2.08 16 16 C 0.11 2.27 5.17 86.07 0.45 2.72 16 17 N -0.58 -13.00 1.68 -827.39 -1.39 -14.40 16 18 C 0.56 12.10 5.71 86.78 0.50 12.60 16 19 O -0.54 -13.43 15.90 -3.91 -0.06 -13.49 16 20 C -0.05 -0.93 5.11 -19.86 -0.10 -1.03 16 21 C -0.08 -0.92 9.67 22.31 0.22 -0.71 16 22 C 0.11 1.34 11.19 83.25 0.93 2.27 16 23 N -0.29 -6.61 3.94 -193.24 -0.76 -7.37 16 24 N -0.12 -3.44 13.98 37.02 0.52 -2.92 16 25 N -0.03 -1.06 13.35 37.02 0.49 -0.57 16 26 N -0.35 -11.78 12.27 -55.73 -0.68 -12.47 16 27 C 0.23 6.23 8.02 134.05 1.07 7.31 16 28 C -0.06 -1.46 7.51 22.88 0.17 -1.29 16 29 C 0.08 2.25 4.13 86.75 0.36 2.61 16 30 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 31 H 0.37 18.48 7.80 -92.71 -0.72 17.76 16 32 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 33 H 0.05 1.44 7.87 -2.39 -0.02 1.42 16 34 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.06 1.18 5.38 -2.39 -0.01 1.17 16 36 H 0.06 1.44 5.47 -2.38 -0.01 1.42 16 37 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.07 1.36 6.31 -2.39 -0.02 1.35 16 40 H 0.09 2.00 6.07 -2.38 -0.01 1.98 16 41 H 0.08 1.58 8.06 -2.39 -0.02 1.56 16 42 H 0.21 0.94 8.06 -2.91 -0.02 0.92 16 43 H 0.23 0.52 8.06 -2.91 -0.02 0.50 16 44 H 0.17 4.05 6.56 -2.91 -0.02 4.03 16 45 H 0.08 2.23 4.58 -2.38 -0.01 2.22 16 46 H 0.06 1.98 7.94 -2.39 -0.02 1.96 16 Total: -1.00 -70.30 360.18 4.76 -65.55 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.33 Total: 24.48 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: 5.66 Total: 6.05 kcal Atomic # 7 Polarization: -125.54 SS G_CDS: -3.20 Total: -128.74 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -0.06 Total: -13.49 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -70.30 4.76 -65.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088359428.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.460 kcal (2) G-P(sol) polarization free energy of solvation -70.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 121.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds