Wall clock time and date at job start Wed Apr 1 2020 03:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.51263 * 2 1 4 4 C 1.53303 * 109.51332 * 120.09717 * 2 1 3 5 5 N 1.47152 * 108.37855 * 172.32483 * 4 2 1 6 6 C 1.34771 * 120.99134 * 129.42902 * 5 4 2 7 7 O 1.21281 * 120.00419 * 179.97438 * 6 5 4 8 8 C 1.50706 * 119.99835 * 359.97438 * 6 5 4 9 9 H 1.09000 * 115.55039 * 34.32825 * 8 6 5 10 10 C 1.52994 * 117.49853 * 248.62103 * 8 6 5 11 11 C 1.53001 * 117.49917 * 179.97438 * 8 6 5 12 12 F 1.39898 * 117.50007 * 214.97915 * 11 8 6 13 13 F 1.39901 * 117.49666 * 0.02562 * 11 8 6 14 14 C 1.47156 * 118.02098 * 309.41040 * 5 4 2 15 15 C 1.53250 * 108.40901 * 50.47748 * 14 5 4 16 16 C 1.52985 * 109.39326 * 67.80830 * 15 14 5 17 17 C 1.53193 * 109.35093 * 181.12826 * 16 15 14 18 18 N 1.46939 * 108.77458 * 305.42733 * 17 16 15 19 19 C 1.36930 * 120.64372 * 233.67946 * 18 17 16 20 20 H 1.07993 * 120.00289 * 28.09633 * 19 18 17 21 21 C 1.38814 * 119.99887 * 208.09984 * 19 18 17 22 22 N 1.31619 * 120.00461 * 17.65636 * 21 19 18 23 23 Si 1.86803 * 119.99964 * 197.65938 * 21 19 18 24 24 H 1.48504 * 109.46901 * 94.06968 * 23 21 19 25 25 H 1.48504 * 109.47303 * 214.06646 * 23 21 19 26 26 H 1.48501 * 109.46970 * 334.06889 * 23 21 19 27 27 C 1.46935 * 118.70901 * 53.95058 * 18 17 16 28 28 C 1.52989 * 109.36620 * 187.89643 * 15 14 5 29 29 O 1.42901 * 109.32530 * 307.83961 * 15 14 5 30 30 H 1.09000 * 109.47516 * 299.90015 * 1 2 3 31 31 H 1.08992 * 109.47047 * 59.90459 * 1 2 3 32 32 H 1.09002 * 109.46900 * 179.90657 * 1 2 3 33 33 H 1.08999 * 109.68273 * 52.59963 * 4 2 1 34 34 H 1.09009 * 109.71048 * 292.06344 * 4 2 1 35 35 H 1.09002 * 117.49967 * 0.02562 * 10 8 6 36 36 H 1.08997 * 117.50073 * 145.01902 * 10 8 6 37 37 H 1.09001 * 109.67666 * 290.74764 * 14 5 4 38 38 H 1.09000 * 109.67558 * 170.20634 * 14 5 4 39 39 H 1.08999 * 109.49323 * 61.16596 * 16 15 14 40 40 H 1.08996 * 109.49589 * 301.08957 * 16 15 14 41 41 H 1.09003 * 109.59284 * 185.64117 * 17 16 15 42 42 H 1.09001 * 109.58642 * 65.21387 * 17 16 15 43 43 H 0.96991 * 120.00886 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.58534 * 65.83409 * 27 18 17 45 45 H 1.09003 * 109.58261 * 186.25482 * 27 18 17 46 46 H 1.08996 * 109.49464 * 298.81207 * 28 15 14 47 47 H 1.08997 * 109.49233 * 58.88771 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7246 1.2502 5 7 3.5015 -0.8735 1.1350 6 6 4.3186 -0.4993 2.1394 7 8 5.5189 -0.6305 2.0256 8 6 3.7407 0.0820 3.4041 9 1 2.7772 -0.3249 3.7111 10 6 4.0052 1.5622 3.6863 11 6 4.7202 0.4867 4.5075 12 9 4.3104 0.3071 5.8330 13 9 6.0839 0.2893 4.2650 14 6 4.0423 -1.4434 -0.1093 15 6 3.4316 -0.6865 -1.2937 16 6 3.9554 0.7509 -1.3024 17 6 3.3228 1.5146 -2.4701 18 7 3.5749 0.7721 -3.7128 19 6 4.1583 1.3879 -4.7876 20 1 4.8300 2.2195 -4.6345 21 6 3.8865 0.9431 -6.0742 22 7 2.8336 0.1864 -6.3002 23 14 5.0150 1.4186 -7.4848 24 1 6.0275 0.3517 -7.6898 25 1 4.2145 1.5861 -8.7243 26 1 5.7002 2.6958 -7.1615 27 6 3.1831 -0.6424 -3.7816 28 6 3.8230 -1.3842 -2.5977 29 8 2.0084 -0.6762 -1.1652 30 1 -0.3634 0.5123 0.8909 31 1 -0.3633 0.5153 -0.8891 32 1 -0.3633 -1.0277 -0.0017 33 1 1.5771 -1.7079 1.3208 34 1 1.8015 -0.1401 2.1383 35 1 4.5968 2.1157 2.9571 36 1 3.2156 2.1296 4.1790 37 1 3.7797 -2.4993 -0.1738 38 1 5.1266 -1.3328 -0.1227 39 1 5.0392 0.7424 -1.4181 40 1 3.6933 1.2393 -0.3639 41 1 3.7672 2.5073 -2.5411 42 1 2.2484 1.6036 -2.3091 43 1 2.6437 -0.1247 -7.1991 44 1 2.0977 -0.7242 -3.7245 45 1 3.5353 -1.0738 -4.7186 46 1 4.9078 -1.3759 -2.7033 47 1 3.4668 -2.4142 -2.5802 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098588582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:58 Heat of formation + Delta-G solvation = -108.912940 kcal Electronic energy + Delta-G solvation = -32490.693711 eV Core-core repulsion = 27925.631971 eV Total energy + Delta-G solvation = -4565.061740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -48.95012 -47.58463 -40.86978 -39.13497 -36.45331 -35.99182 -34.71696 -33.56181 -31.64008 -30.18578 -29.73938 -27.67196 -26.55508 -24.97799 -23.57036 -22.87212 -22.62112 -21.72560 -20.80288 -19.37877 -19.02766 -18.50824 -17.22615 -17.01171 -16.85667 -16.33814 -15.77945 -15.56348 -15.48537 -14.95737 -14.76487 -14.40184 -14.23836 -14.07059 -13.97262 -13.77410 -13.54701 -13.38643 -13.32987 -13.06276 -12.94135 -12.64612 -12.40343 -12.13422 -11.86554 -11.64844 -11.62731 -11.45022 -11.34166 -11.03088 -10.83885 -10.69194 -10.49851 -10.36102 -10.29579 -10.18509 -9.89043 -9.85886 -9.55966 -9.36578 -8.49804 -8.44129 -6.64448 -5.76926 -3.18992 1.97327 2.40845 2.66808 2.99804 3.38858 3.46241 3.47300 3.78447 3.79090 3.81999 4.20849 4.32897 4.51057 4.58092 4.76861 4.88948 4.99051 5.02179 5.13625 5.17174 5.26024 5.31922 5.37905 5.41897 5.44683 5.54341 5.58977 5.71976 5.80572 5.92116 5.99371 6.11673 6.21664 6.26598 6.30460 6.50666 6.53419 6.63894 6.72897 6.98350 7.11258 7.39943 7.55844 7.73159 7.81656 7.87443 8.46779 9.23568 9.86919 10.44696 11.31266 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.003022 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.636359 B = 9264.115031 C = 9958.688334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.070 3.930 3 H 0.067 0.933 4 C 0.076 3.924 5 N -0.602 5.602 6 C 0.542 3.458 7 O -0.519 6.519 8 C -0.197 4.197 9 H 0.149 0.851 10 C -0.147 4.147 11 C 0.230 3.770 12 F -0.157 7.157 13 F -0.137 7.137 14 C 0.088 3.912 15 C 0.120 3.880 16 C -0.152 4.152 17 C 0.153 3.847 18 N -0.590 5.590 19 C -0.253 4.253 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.179 3.821 28 C -0.127 4.127 29 O -0.352 6.352 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.130 0.870 36 H 0.134 0.866 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.050 0.950 42 H 0.021 0.979 43 H 0.253 0.747 44 H 0.028 0.972 45 H 0.086 0.914 46 H 0.071 0.929 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 -0.893 21.027 21.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.085 0.915 4 C -0.047 4.047 5 N -0.335 5.335 6 C 0.328 3.672 7 O -0.395 6.395 8 C -0.219 4.219 9 H 0.166 0.834 10 C -0.185 4.185 11 C 0.192 3.808 12 F -0.137 7.137 13 F -0.117 7.117 14 C -0.033 4.033 15 C 0.080 3.920 16 C -0.192 4.192 17 C 0.026 3.974 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.545 5.545 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.053 3.947 28 C -0.167 4.167 29 O -0.271 6.271 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.097 0.903 34 H 0.108 0.892 35 H 0.148 0.852 36 H 0.153 0.847 37 H 0.092 0.908 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.063 0.937 44 H 0.047 0.953 45 H 0.104 0.896 46 H 0.089 0.911 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.709 -1.121 20.684 21.044 hybrid contribution 0.651 0.133 -0.287 0.724 sum -3.058 -0.988 20.397 20.649 Atomic orbital electron populations 1.21703 0.92473 1.03024 1.02770 1.22380 0.95316 0.96121 0.85086 0.91479 1.22628 0.79869 1.02157 1.00058 1.48022 1.06851 1.62351 1.16274 1.19178 0.86399 0.78402 0.83205 1.90800 1.14113 1.54203 1.80356 1.23669 1.01979 1.00525 0.95758 0.83373 1.24309 1.02530 0.90748 1.00880 1.19472 0.77875 1.05978 0.77461 1.93049 1.89570 1.95964 1.35161 1.93140 1.29586 1.95483 1.93528 1.22567 1.00968 0.97481 0.82333 1.21751 0.80444 0.95467 0.94318 1.22529 1.01505 0.95691 0.99460 1.20762 0.96403 0.93885 0.86313 1.44054 1.70873 1.06149 1.10219 1.19195 1.19386 1.15124 0.84557 0.91773 1.25029 0.96602 1.00583 0.97349 1.70041 1.24934 1.39138 1.20372 0.86302 0.80326 0.78237 0.82068 1.21472 1.21819 1.20442 1.20776 0.96142 0.83162 0.94589 1.22288 1.01146 0.98649 0.94586 1.88087 1.20936 1.76241 1.41820 0.91357 0.90959 0.91755 0.90326 0.89247 0.85177 0.84745 0.90790 0.88181 0.91357 0.93223 0.93139 0.96160 0.93666 0.95343 0.89558 0.91074 0.92345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.57 37.16 0.36 -1.01 16 2 C 0.07 0.83 3.01 -26.58 -0.08 0.75 16 3 H 0.07 0.84 6.29 -51.93 -0.33 0.51 16 4 C 0.08 0.72 5.77 -3.53 -0.02 0.70 16 5 N -0.60 -7.37 2.52 -172.29 -0.43 -7.80 16 6 C 0.54 6.95 7.50 -10.99 -0.08 6.87 16 7 O -0.52 -8.72 14.61 5.56 0.08 -8.64 16 8 C -0.20 -1.75 4.94 -91.77 -0.45 -2.20 16 9 H 0.15 0.87 6.91 -51.93 -0.36 0.51 16 10 C -0.15 -1.04 10.21 -26.71 -0.27 -1.31 16 11 C 0.23 2.33 5.19 -26.71 -0.14 2.20 16 12 F -0.16 -1.56 17.60 2.25 0.04 -1.52 16 13 F -0.14 -1.88 15.71 2.25 0.04 -1.85 16 14 C 0.09 1.27 5.29 -3.55 -0.02 1.25 16 15 C 0.12 1.97 0.68 -90.50 -0.06 1.91 16 16 C -0.15 -2.65 4.33 -26.64 -0.12 -2.76 16 17 C 0.15 3.19 6.28 -3.70 -0.02 3.17 16 18 N -0.59 -14.66 2.99 -172.01 -0.51 -15.17 16 19 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 20 H 0.06 1.74 7.89 -52.49 -0.41 1.32 16 21 C 0.00 0.09 4.90 -17.43 -0.09 0.00 16 22 N -0.90 -25.98 11.22 55.49 0.62 -25.36 16 23 Si 0.90 21.65 29.59 -169.99 -5.03 16.62 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 27 C 0.18 4.23 5.11 -3.46 -0.02 4.21 16 28 C -0.13 -2.37 5.12 -26.39 -0.14 -2.51 16 29 O -0.35 -5.68 8.64 -35.23 -0.30 -5.99 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 0.56 5.83 -51.92 -0.30 0.26 16 35 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.13 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.57 7.07 -51.93 -0.37 1.20 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.05 0.77 6.15 -51.93 -0.32 0.45 16 41 H 0.05 1.05 7.93 -51.93 -0.41 0.63 16 42 H 0.02 0.44 7.83 -51.93 -0.41 0.03 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.03 0.72 7.82 -51.93 -0.41 0.32 16 45 H 0.09 2.28 6.05 -51.93 -0.31 1.97 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 371.16 15.07 5.59 5.59 Total: -1.00 -32.73 371.16 -8.19 -40.92 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -6.99 Total: -0.99 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -1.29 Total: 4.19 kcal Atomic # 7 Polarization: -48.01 SS G_CDS: -0.33 Total: -48.34 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.22 Total: -14.63 kcal Atomic # 9 Polarization: -3.44 SS G_CDS: 0.08 Total: -3.37 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.73 -8.19 -40.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098588582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.995 kcal (2) G-P(sol) polarization free energy of solvation -32.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds