Wall clock time and date at job start Wed Apr 1 2020 03:10:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.51263 * 2 1 4 4 C 1.53303 * 109.51332 * 120.09717 * 2 1 3 5 5 N 1.47152 * 108.37855 * 172.32483 * 4 2 1 6 6 C 1.34771 * 120.99134 * 129.42902 * 5 4 2 7 7 O 1.21281 * 120.00419 * 179.97438 * 6 5 4 8 8 C 1.50706 * 119.99835 * 359.97438 * 6 5 4 9 9 H 1.09000 * 115.55039 * 34.32825 * 8 6 5 10 10 C 1.52994 * 117.49853 * 248.62103 * 8 6 5 11 11 C 1.53001 * 117.49917 * 179.97438 * 8 6 5 12 12 F 1.39898 * 117.50007 * 214.97915 * 11 8 6 13 13 F 1.39901 * 117.49666 * 0.02562 * 11 8 6 14 14 C 1.47156 * 118.02098 * 309.41040 * 5 4 2 15 15 C 1.53250 * 108.40901 * 50.47748 * 14 5 4 16 16 C 1.52985 * 109.39326 * 67.80830 * 15 14 5 17 17 C 1.53193 * 109.35093 * 181.12826 * 16 15 14 18 18 N 1.46939 * 108.77458 * 305.42733 * 17 16 15 19 19 C 1.36930 * 120.64372 * 233.67946 * 18 17 16 20 20 H 1.07993 * 120.00289 * 28.09633 * 19 18 17 21 21 C 1.38814 * 119.99887 * 208.09984 * 19 18 17 22 22 N 1.31619 * 120.00461 * 17.65636 * 21 19 18 23 23 Si 1.86803 * 119.99964 * 197.65938 * 21 19 18 24 24 H 1.48504 * 109.46901 * 94.06968 * 23 21 19 25 25 H 1.48504 * 109.47303 * 214.06646 * 23 21 19 26 26 H 1.48501 * 109.46970 * 334.06889 * 23 21 19 27 27 C 1.46935 * 118.70901 * 53.95058 * 18 17 16 28 28 C 1.52989 * 109.36620 * 187.89643 * 15 14 5 29 29 O 1.42901 * 109.32530 * 307.83961 * 15 14 5 30 30 H 1.09000 * 109.47516 * 299.90015 * 1 2 3 31 31 H 1.08992 * 109.47047 * 59.90459 * 1 2 3 32 32 H 1.09002 * 109.46900 * 179.90657 * 1 2 3 33 33 H 1.08999 * 109.68273 * 52.59963 * 4 2 1 34 34 H 1.09009 * 109.71048 * 292.06344 * 4 2 1 35 35 H 1.09002 * 117.49967 * 0.02562 * 10 8 6 36 36 H 1.08997 * 117.50073 * 145.01902 * 10 8 6 37 37 H 1.09001 * 109.67666 * 290.74764 * 14 5 4 38 38 H 1.09000 * 109.67558 * 170.20634 * 14 5 4 39 39 H 1.08999 * 109.49323 * 61.16596 * 16 15 14 40 40 H 1.08996 * 109.49589 * 301.08957 * 16 15 14 41 41 H 1.09003 * 109.59284 * 185.64117 * 17 16 15 42 42 H 1.09001 * 109.58642 * 65.21387 * 17 16 15 43 43 H 0.96991 * 120.00886 * 180.02562 * 22 21 19 44 44 H 1.09002 * 109.58534 * 65.83409 * 27 18 17 45 45 H 1.09003 * 109.58261 * 186.25482 * 27 18 17 46 46 H 1.08996 * 109.49464 * 298.81207 * 28 15 14 47 47 H 1.08997 * 109.49233 * 58.88771 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0421 -0.7246 1.2502 5 7 3.5015 -0.8735 1.1350 6 6 4.3186 -0.4993 2.1394 7 8 5.5189 -0.6305 2.0256 8 6 3.7407 0.0820 3.4041 9 1 2.7772 -0.3249 3.7111 10 6 4.0052 1.5622 3.6863 11 6 4.7202 0.4867 4.5075 12 9 4.3104 0.3071 5.8330 13 9 6.0839 0.2893 4.2650 14 6 4.0423 -1.4434 -0.1093 15 6 3.4316 -0.6865 -1.2937 16 6 3.9554 0.7509 -1.3024 17 6 3.3228 1.5146 -2.4701 18 7 3.5749 0.7721 -3.7128 19 6 4.1583 1.3879 -4.7876 20 1 4.8300 2.2195 -4.6345 21 6 3.8865 0.9431 -6.0742 22 7 2.8336 0.1864 -6.3002 23 14 5.0150 1.4186 -7.4848 24 1 6.0275 0.3517 -7.6898 25 1 4.2145 1.5861 -8.7243 26 1 5.7002 2.6958 -7.1615 27 6 3.1831 -0.6424 -3.7816 28 6 3.8230 -1.3842 -2.5977 29 8 2.0084 -0.6762 -1.1652 30 1 -0.3634 0.5123 0.8909 31 1 -0.3633 0.5153 -0.8891 32 1 -0.3633 -1.0277 -0.0017 33 1 1.5771 -1.7079 1.3208 34 1 1.8015 -0.1401 2.1383 35 1 4.5968 2.1157 2.9571 36 1 3.2156 2.1296 4.1790 37 1 3.7797 -2.4993 -0.1738 38 1 5.1266 -1.3328 -0.1227 39 1 5.0392 0.7424 -1.4181 40 1 3.6933 1.2393 -0.3639 41 1 3.7672 2.5073 -2.5411 42 1 2.2484 1.6036 -2.3091 43 1 2.6437 -0.1247 -7.1991 44 1 2.0977 -0.7242 -3.7245 45 1 3.5353 -1.0738 -4.7186 46 1 4.9078 -1.3759 -2.7033 47 1 3.4668 -2.4142 -2.5802 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098588582.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:10:57 Heat of formation + Delta-G solvation = -129.074179 kcal Electronic energy + Delta-G solvation = -32491.567968 eV Core-core repulsion = 27925.631971 eV Total energy + Delta-G solvation = -4565.935997 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.70512 -48.38528 -41.95399 -40.26949 -37.98259 -36.73885 -35.82798 -35.04833 -33.31095 -31.66389 -31.28582 -29.05161 -27.38529 -26.50690 -24.82528 -24.10801 -23.56985 -23.00884 -22.14292 -20.63211 -20.12569 -19.33130 -18.84417 -18.04955 -17.77609 -17.17476 -16.98391 -16.85987 -16.62125 -16.36204 -15.99201 -15.80709 -15.27165 -15.04341 -15.03542 -14.99690 -14.93169 -14.72821 -14.58992 -14.28280 -13.90537 -13.56915 -13.37500 -13.21064 -13.15649 -13.04837 -12.90689 -12.79550 -12.63975 -12.58236 -12.32114 -12.21720 -12.06068 -11.84897 -11.73791 -11.47114 -11.33713 -11.12473 -10.85590 -10.78934 -10.53256 -9.56895 -8.67289 -7.87100 -5.32418 1.12511 1.45895 1.47787 1.54372 1.56583 1.99789 2.22306 2.50670 2.71908 3.04535 3.16462 3.26743 3.50550 3.55606 3.69203 3.70036 3.79210 3.89765 3.95110 4.15557 4.20506 4.37988 4.40907 4.47001 4.48062 4.56764 4.61466 4.67715 4.71386 4.75693 4.76248 4.86582 4.90362 4.95708 5.05358 5.11588 5.16157 5.22403 5.31707 5.40355 5.45956 5.64381 5.79231 6.19375 6.38780 6.41589 6.92768 7.15166 7.86298 8.39116 9.18890 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018265 B = 0.003022 C = 0.002811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.636359 B = 9264.115031 C = 9958.688334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.060 3.940 3 H 0.061 0.939 4 C 0.078 3.922 5 N -0.601 5.601 6 C 0.536 3.464 7 O -0.568 6.568 8 C -0.190 4.190 9 H 0.189 0.811 10 C -0.116 4.116 11 C 0.198 3.802 12 F -0.158 7.158 13 F -0.167 7.167 14 C 0.097 3.903 15 C 0.129 3.871 16 C -0.138 4.138 17 C 0.154 3.846 18 N -0.608 5.608 19 C -0.266 4.266 20 H 0.063 0.937 21 C -0.047 4.047 22 N -0.931 5.931 23 Si 0.965 3.035 24 H -0.286 1.286 25 H -0.294 1.294 26 H -0.269 1.269 27 C 0.191 3.809 28 C -0.119 4.119 29 O -0.377 6.377 30 H 0.107 0.893 31 H 0.046 0.954 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.133 0.867 35 H 0.123 0.877 36 H 0.178 0.822 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.250 0.750 44 H 0.002 0.998 45 H 0.051 0.949 46 H 0.067 0.933 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.484 -0.279 23.638 24.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.001 3.999 3 H 0.079 0.921 4 C -0.043 4.043 5 N -0.333 5.333 6 C 0.325 3.675 7 O -0.446 6.446 8 C -0.212 4.212 9 H 0.206 0.794 10 C -0.154 4.154 11 C 0.161 3.839 12 F -0.138 7.138 13 F -0.148 7.148 14 C -0.026 4.026 15 C 0.089 3.911 16 C -0.177 4.177 17 C 0.028 3.972 18 N -0.332 5.332 19 C -0.396 4.396 20 H 0.081 0.919 21 C -0.243 4.243 22 N -0.577 5.577 23 Si 0.793 3.207 24 H -0.213 1.213 25 H -0.220 1.220 26 H -0.194 1.194 27 C 0.065 3.935 28 C -0.159 4.159 29 O -0.297 6.297 30 H 0.126 0.874 31 H 0.066 0.934 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.151 0.849 35 H 0.142 0.858 36 H 0.195 0.805 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.034 0.966 43 H 0.059 0.941 44 H 0.020 0.980 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.994 -0.493 23.333 23.866 hybrid contribution 0.972 -0.027 -1.076 1.450 sum -4.021 -0.520 22.257 22.624 Atomic orbital electron populations 1.21720 0.90689 1.03506 1.03485 1.22712 0.96701 0.95719 0.84723 0.92126 1.22841 0.77706 1.03496 1.00272 1.48085 1.08164 1.61747 1.15267 1.19855 0.85841 0.77580 0.84253 1.90790 1.16387 1.56056 1.81400 1.23751 1.02642 1.01916 0.92842 0.79399 1.24518 1.02155 0.89699 0.98997 1.19926 0.76885 1.09189 0.77879 1.93041 1.89349 1.96205 1.35228 1.93073 1.32074 1.95896 1.93750 1.22229 0.99841 0.97785 0.82716 1.21450 0.81321 0.94477 0.93867 1.22333 1.00197 0.96377 0.98776 1.20832 0.96352 0.93975 0.86033 1.44307 1.71000 1.06947 1.10925 1.19495 1.19336 1.15102 0.85644 0.91910 1.25761 0.97885 1.01043 0.99612 1.70191 1.26500 1.40474 1.20548 0.85293 0.78366 0.78179 0.78843 1.21304 1.22028 1.19407 1.20473 0.94611 0.83266 0.95126 1.22092 1.00469 0.99203 0.94113 1.88065 1.20132 1.76989 1.44484 0.87443 0.93431 0.91384 0.88862 0.84894 0.85838 0.80458 0.89745 0.89860 0.92743 0.90771 0.93471 0.96590 0.94068 0.98028 0.93052 0.91482 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.57 71.98 0.69 -1.51 16 2 C 0.06 1.23 3.01 30.70 0.09 1.33 16 3 H 0.06 1.33 6.29 -2.39 -0.02 1.32 16 4 C 0.08 1.12 5.77 86.36 0.50 1.62 16 5 N -0.60 -12.97 2.52 -817.40 -2.06 -15.03 16 6 C 0.54 12.44 7.50 87.66 0.66 13.10 16 7 O -0.57 -18.77 14.61 -3.03 -0.04 -18.82 16 8 C -0.19 -2.58 4.94 -11.54 -0.06 -2.64 16 9 H 0.19 0.98 6.91 -2.39 -0.02 0.97 16 10 C -0.12 -1.15 10.21 30.61 0.31 -0.84 16 11 C 0.20 3.55 5.19 30.61 0.16 3.71 16 12 F -0.16 -2.74 17.60 44.97 0.79 -1.94 16 13 F -0.17 -4.55 15.71 44.97 0.71 -3.84 16 14 C 0.10 2.66 5.29 86.34 0.46 3.12 16 15 C 0.13 4.15 0.68 -10.72 -0.01 4.15 16 16 C -0.14 -4.72 4.33 30.65 0.13 -4.58 16 17 C 0.15 6.48 6.28 86.36 0.54 7.03 16 18 N -0.61 -31.13 2.99 -698.13 -2.08 -33.22 16 19 C -0.27 -14.89 9.58 84.04 0.81 -14.08 16 20 H 0.06 3.46 7.89 -2.91 -0.02 3.44 16 21 C -0.05 -2.67 4.90 84.86 0.42 -2.26 16 22 N -0.93 -55.62 11.22 21.65 0.24 -55.37 16 23 Si 0.96 45.42 29.59 68.60 2.03 47.45 16 24 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 25 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 26 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 27 C 0.19 9.39 5.11 86.52 0.44 9.83 16 28 C -0.12 -4.54 5.12 30.81 0.16 -4.38 16 29 O -0.38 -11.75 8.64 -148.98 -1.29 -13.03 16 30 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 33 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.13 0.77 5.83 -2.38 -0.01 0.76 16 35 H 0.12 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.18 0.25 8.14 -2.39 -0.02 0.24 16 37 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.08 2.59 7.07 -2.39 -0.02 2.58 16 39 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.07 2.17 6.15 -2.39 -0.01 2.15 16 41 H 0.05 1.97 7.93 -2.39 -0.02 1.96 16 42 H 0.02 0.69 7.83 -2.39 -0.02 0.68 16 43 H 0.25 14.43 8.31 -92.72 -0.77 13.66 16 44 H 0.00 0.08 7.82 -2.39 -0.02 0.07 16 45 H 0.05 2.86 6.05 -2.39 -0.01 2.84 16 46 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 47 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -76.56 371.16 4.57 -71.99 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.99 Total: 8.24 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 5.30 Total: 13.58 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -3.90 Total: -103.62 kcal Atomic # 8 Polarization: -30.52 SS G_CDS: -1.33 Total: -31.85 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 1.50 Total: -5.79 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -76.56 4.57 -71.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098588582.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.084 kcal (2) G-P(sol) polarization free energy of solvation -76.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds