Wall clock time and date at job start Wed Apr 1 2020 03:11:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09003 * 109.54827 * 2 1
4 4 C 1.53286 * 109.51026 * 239.87669 * 2 1 3
5 5 N 1.47157 * 108.37363 * 187.73100 * 4 2 1
6 6 C 1.34779 * 120.99071 * 230.56894 * 5 4 2
7 7 O 1.21275 * 120.00224 * 179.97438 * 6 5 4
8 8 C 1.50701 * 119.99664 * 0.02562 * 6 5 4
9 9 H 1.09002 * 115.55283 * 34.32785 * 8 6 5
10 10 C 1.52996 * 117.49643 * 179.97438 * 8 6 5
11 11 C 1.52998 * 117.49774 * 248.61796 * 8 6 5
12 12 F 1.39897 * 117.49947 * 359.97438 * 11 8 6
13 13 F 1.39897 * 117.49952 * 145.02661 * 11 8 6
14 14 C 1.47157 * 118.02065 * 50.59434 * 5 4 2
15 15 C 1.53258 * 108.40587 * 309.51330 * 14 5 4
16 16 C 1.53003 * 109.35762 * 172.09763 * 15 14 5
17 17 C 1.53184 * 109.34811 * 181.14058 * 16 15 14
18 18 N 1.46933 * 108.76865 * 305.41014 * 17 16 15
19 19 C 1.36935 * 120.64590 * 233.70475 * 18 17 16
20 20 H 1.08004 * 119.99577 * 27.67276 * 19 18 17
21 21 C 1.38811 * 120.00268 * 207.67685 * 19 18 17
22 22 N 1.31617 * 120.00040 * 17.36141 * 21 19 18
23 23 Si 1.86800 * 120.00097 * 197.36756 * 21 19 18
24 24 H 1.48502 * 109.46951 * 59.99556 * 23 21 19
25 25 H 1.48492 * 109.47178 * 179.97438 * 23 21 19
26 26 H 1.48498 * 109.46975 * 299.99771 * 23 21 19
27 27 C 1.46922 * 118.71183 * 53.68989 * 18 17 16
28 28 C 1.52985 * 109.39022 * 292.17581 * 15 14 5
29 29 O 1.42894 * 109.32322 * 52.15764 * 15 14 5
30 30 H 1.08995 * 109.47014 * 299.88817 * 1 2 3
31 31 H 1.09004 * 109.46967 * 59.88064 * 1 2 3
32 32 H 1.08996 * 109.47337 * 179.87918 * 1 2 3
33 33 H 1.09004 * 109.68040 * 307.44981 * 4 2 1
34 34 H 1.09000 * 109.68695 * 68.01077 * 4 2 1
35 35 H 1.09001 * 117.50114 * 214.97956 * 10 8 6
36 36 H 1.09003 * 117.50267 * 359.97438 * 10 8 6
37 37 H 1.09003 * 109.67370 * 69.24071 * 14 5 4
38 38 H 1.08996 * 109.67422 * 189.78124 * 14 5 4
39 39 H 1.09001 * 109.48770 * 301.10604 * 16 15 14
40 40 H 1.09004 * 109.49013 * 61.17454 * 16 15 14
41 41 H 1.08998 * 109.58779 * 185.62643 * 17 16 15
42 42 H 1.09004 * 109.70641 * 65.27171 * 17 16 15
43 43 H 0.96997 * 120.00135 * 180.02562 * 22 21 19
44 44 H 1.08999 * 109.58532 * 186.54197 * 27 18 17
45 45 H 1.08999 * 109.70461 * 66.18472 * 27 18 17
46 46 H 1.08996 * 109.49486 * 298.86564 * 28 15 14
47 47 H 1.09008 * 109.48403 * 58.91386 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8948 1.0272 0.0000
4 6 2.0420 -0.7251 -1.2497
5 7 3.5013 -0.8751 -1.1339
6 6 4.3192 -0.5018 -2.1380
7 8 5.5194 -0.6330 -2.0231
8 6 3.7424 0.0798 -3.4029
9 1 2.8491 0.6911 -3.2747
10 6 4.7228 0.4846 -4.5054
11 6 3.8478 -0.7590 -4.6782
12 9 4.4727 -2.0068 -4.5808
13 9 2.7901 -0.6828 -5.5907
14 6 4.0410 -1.4453 0.1108
15 6 3.4305 -0.6877 1.2948
16 6 3.8206 -1.3858 2.5992
17 6 3.1868 -0.6449 3.7806
18 7 3.5747 0.7707 3.7139
19 6 4.1589 1.3857 4.7889
20 1 4.7366 0.8066 5.4941
21 6 4.0085 2.7534 4.9723
22 7 3.0528 3.4010 4.3402
23 14 5.1628 3.6750 6.1159
24 1 6.5593 3.5291 5.6325
25 1 4.7944 5.1133 6.1372
26 1 5.0525 3.1150 7.4869
27 6 3.3239 1.5135 2.4713
28 6 3.9559 0.7491 1.3038
29 8 2.0074 -0.6761 1.1656
30 1 -0.3633 0.5121 0.8909
31 1 -0.3633 0.5157 -0.8889
32 1 -0.3634 -1.0276 -0.0022
33 1 1.5763 -1.7081 -1.3204
34 1 1.8024 -0.1401 -2.1377
35 1 4.4743 1.3618 -5.1028
36 1 5.7851 0.3308 -4.3157
37 1 3.7774 -2.5010 0.1753
38 1 5.1254 -1.3358 0.1246
39 1 3.4632 -2.4155 2.5815
40 1 4.9055 -1.3788 2.7051
41 1 3.5418 -1.0774 4.7161
42 1 2.1013 -0.7293 3.7278
43 1 2.9479 4.3568 4.4681
44 1 3.7697 2.5056 2.5424
45 1 2.2501 1.6061 2.3089
46 1 5.0397 0.7393 1.4195
47 1 3.6948 1.2376 0.3649
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001098588584.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:11:02
Heat of formation + Delta-G solvation = -109.883571 kcal
Electronic energy + Delta-G solvation = -32570.736293 eV
Core-core repulsion = 28005.632464 eV
Total energy + Delta-G solvation = -4565.103830 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.170 amu
Computer time = 1.01 seconds
Orbital eigenvalues (eV)
-49.07136 -47.73940 -40.84367 -39.14334 -36.46448 -35.93283 -34.70396 -33.58334
-31.52782 -30.20778 -29.78523 -27.68038 -26.53117 -24.97912 -23.43237 -22.93478
-22.63095 -21.72167 -20.73863 -19.39843 -18.98930 -18.49540 -17.45485 -17.01104
-16.94126 -16.39109 -15.96854 -15.67317 -15.19322 -14.79087 -14.70444 -14.44680
-14.36039 -14.10779 -14.01528 -13.86458 -13.57275 -13.49248 -13.27434 -13.04897
-12.80737 -12.60021 -12.37061 -12.11091 -11.82107 -11.57843 -11.53115 -11.47568
-11.42408 -11.04131 -10.74605 -10.66819 -10.54839 -10.39473 -10.29068 -10.22044
-9.94618 -9.82836 -9.56063 -9.34810 -8.47762 -8.42874 -6.64199 -5.77237
-3.18449 1.85437 2.51213 2.67443 3.04186 3.39375 3.44914 3.46618
3.75884 3.82217 3.84875 4.15442 4.33845 4.51502 4.62304 4.79446
4.93256 5.05306 5.09663 5.16300 5.21929 5.29408 5.38081 5.39574
5.44446 5.49644 5.58510 5.60361 5.75154 5.82307 5.98596 6.04679
6.15031 6.21099 6.30221 6.39828 6.42886 6.52823 6.64673 6.81198
7.05583 7.13683 7.37416 7.54572 7.68092 7.80616 7.87886 8.46721
9.23503 9.87419 10.44887 11.31338
Molecular weight = 344.17amu
Principal moments of inertia in cm(-1)
A = 0.016856 B = 0.003125 C = 0.002999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1660.714700 B = 8959.125417 C = 9332.932500
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C 0.070 3.930
3 H 0.071 0.929
4 C 0.075 3.925
5 N -0.600 5.600
6 C 0.546 3.454
7 O -0.525 6.525
8 C -0.195 4.195
9 H 0.151 0.849
10 C -0.139 4.139
11 C 0.222 3.778
12 F -0.150 7.150
13 F -0.155 7.155
14 C 0.089 3.911
15 C 0.119 3.881
16 C -0.117 4.117
17 C 0.151 3.849
18 N -0.591 5.591
19 C -0.252 4.252
20 H 0.065 0.935
21 C 0.002 3.998
22 N -0.903 5.903
23 Si 0.901 3.099
24 H -0.284 1.284
25 H -0.291 1.291
26 H -0.283 1.283
27 C 0.181 3.819
28 C -0.160 4.160
29 O -0.354 6.354
30 H 0.073 0.927
31 H 0.068 0.932
32 H 0.062 0.938
33 H 0.079 0.921
34 H 0.089 0.911
35 H 0.134 0.866
36 H 0.137 0.863
37 H 0.073 0.927
38 H 0.100 0.900
39 H 0.060 0.940
40 H 0.074 0.926
41 H 0.053 0.947
42 H 0.028 0.972
43 H 0.253 0.747
44 H 0.085 0.915
45 H 0.021 0.979
46 H 0.064 0.936
47 H 0.048 0.952
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.154 -7.513 -18.058 19.811
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C 0.012 3.988
3 H 0.089 0.911
4 C -0.048 4.048
5 N -0.332 5.332
6 C 0.332 3.668
7 O -0.401 6.401
8 C -0.217 4.217
9 H 0.168 0.832
10 C -0.177 4.177
11 C 0.185 3.815
12 F -0.131 7.131
13 F -0.135 7.135
14 C -0.033 4.033
15 C 0.079 3.921
16 C -0.157 4.157
17 C 0.025 3.975
18 N -0.313 5.313
19 C -0.381 4.381
20 H 0.083 0.917
21 C -0.196 4.196
22 N -0.548 5.548
23 Si 0.731 3.269
24 H -0.211 1.211
25 H -0.217 1.217
26 H -0.209 1.209
27 C 0.055 3.945
28 C -0.200 4.200
29 O -0.273 6.273
30 H 0.092 0.908
31 H 0.087 0.913
32 H 0.081 0.919
33 H 0.097 0.903
34 H 0.107 0.893
35 H 0.152 0.848
36 H 0.155 0.845
37 H 0.091 0.909
38 H 0.118 0.882
39 H 0.078 0.922
40 H 0.092 0.908
41 H 0.071 0.929
42 H 0.045 0.955
43 H 0.063 0.937
44 H 0.103 0.897
45 H 0.040 0.960
46 H 0.083 0.917
47 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -2.685 -7.537 -17.841 19.553
hybrid contribution 0.446 0.509 0.175 0.699
sum -2.239 -7.028 -17.666 19.144
Atomic orbital electron populations
1.21701 0.92430 1.02831 1.02954 1.22395 0.95336 0.96331 0.84786
0.91116 1.22653 0.79792 1.02220 1.00108 1.47982 1.06914 1.62035
1.16279 1.19085 0.86313 0.78057 0.83311 1.90725 1.14321 1.54534
1.80535 1.23773 1.04704 1.03124 0.90148 0.83154 1.24324 1.00182
0.96121 0.97044 1.19665 0.88501 0.81564 0.91818 1.93084 1.81387
1.42508 1.96099 1.93060 1.56841 1.96250 1.67358 1.22553 1.00976
0.97290 0.82481 1.21739 0.80614 0.96033 0.93759 1.21999 1.01141
0.98266 0.94294 1.20786 0.96490 0.85946 0.94287 1.44017 1.70590
1.05766 1.10963 1.19161 1.24105 0.91327 1.03553 0.91712 1.25012
0.97436 0.98054 0.99120 1.70025 1.30414 1.08410 1.45905 0.86390
0.80956 0.78842 0.80719 1.21082 1.21678 1.20891 1.20632 0.96581
0.95232 0.82091 1.22719 1.01452 0.95158 1.00645 1.88019 1.20889
1.76319 1.42113 0.90846 0.91307 0.91885 0.90266 0.89319 0.84839
0.84514 0.90920 0.88173 0.92174 0.90780 0.92875 0.95453 0.93693
0.89729 0.96049 0.91722 0.93367
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.51 9.57 37.16 0.36 -1.16 16
2 C 0.07 0.92 3.01 -26.58 -0.08 0.84 16
3 H 0.07 1.03 6.29 -51.93 -0.33 0.70 16
4 C 0.08 0.81 5.84 -3.54 -0.02 0.79 16
5 N -0.60 -7.95 2.52 -172.30 -0.43 -8.38 16
6 C 0.55 7.42 7.13 -10.98 -0.08 7.34 16
7 O -0.52 -8.83 15.73 5.56 0.09 -8.74 16
8 C -0.20 -1.89 5.16 -91.77 -0.47 -2.36 16
9 H 0.15 1.06 6.55 -51.93 -0.34 0.72 16
10 C -0.14 -1.11 10.02 -26.71 -0.27 -1.38 16
11 C 0.22 2.19 5.20 -26.71 -0.14 2.05 16
12 F -0.15 -1.87 17.13 2.25 0.04 -1.83 16
13 F -0.15 -1.49 17.60 2.25 0.04 -1.45 16
14 C 0.09 1.31 5.29 -3.55 -0.02 1.29 16
15 C 0.12 1.98 0.68 -90.49 -0.06 1.91 16
16 C -0.12 -2.02 5.10 -26.63 -0.14 -2.15 16
17 C 0.15 3.18 6.28 -3.71 -0.02 3.16 16
18 N -0.59 -14.74 2.99 -172.32 -0.52 -15.26 16
19 C -0.25 -6.90 9.59 -15.06 -0.14 -7.05 16
20 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16
21 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16
22 N -0.90 -26.07 11.19 55.49 0.62 -25.45 16
23 Si 0.90 21.70 29.59 -169.99 -5.03 16.68 16
24 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16
25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16
26 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16
27 C 0.18 4.27 5.08 -3.71 -0.02 4.25 16
28 C -0.16 -3.07 4.33 -26.64 -0.12 -3.19 16
29 O -0.35 -5.85 8.65 -35.23 -0.30 -6.15 16
30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16
31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16
32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16
33 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16
34 H 0.09 0.71 5.59 -51.93 -0.29 0.42 16
35 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16
36 H 0.14 1.21 7.67 -51.93 -0.40 0.82 16
37 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16
38 H 0.10 1.59 7.07 -51.93 -0.37 1.22 16
39 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16
40 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16
41 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16
42 H 0.03 0.60 7.83 -51.93 -0.41 0.20 16
43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16
44 H 0.08 2.27 6.03 -51.93 -0.31 1.96 16
45 H 0.02 0.54 7.83 -51.93 -0.41 0.13 16
46 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16
47 H 0.05 0.87 6.16 -51.92 -0.32 0.55 16
LS Contribution 372.33 15.07 5.61 5.61
Total: -1.00 -32.24 372.33 -8.13 -40.37
By element:
Atomic # 1 Polarization: 7.23 SS G_CDS: -6.93 Total: 0.29 kcal
Atomic # 6 Polarization: 5.62 SS G_CDS: -1.31 Total: 4.32 kcal
Atomic # 7 Polarization: -48.76 SS G_CDS: -0.33 Total: -49.09 kcal
Atomic # 8 Polarization: -14.68 SS G_CDS: -0.22 Total: -14.90 kcal
Atomic # 9 Polarization: -3.36 SS G_CDS: 0.08 Total: -3.28 kcal
Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal
Total LS contribution 5.61 Total: 5.61 kcal
Total: -32.24 -8.13 -40.37 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098588584.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -69.512 kcal
(2) G-P(sol) polarization free energy of solvation -32.242 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.755 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.371 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.884 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.01 seconds