Wall clock time and date at job start Wed Apr 1 2020 03:11:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 H 1.09003 * 109.54827 * 2 1
4 4 C 1.53286 * 109.51026 * 239.87669 * 2 1 3
5 5 N 1.47157 * 108.37363 * 187.73100 * 4 2 1
6 6 C 1.34779 * 120.99071 * 230.56894 * 5 4 2
7 7 O 1.21275 * 120.00224 * 179.97438 * 6 5 4
8 8 C 1.50701 * 119.99664 * 0.02562 * 6 5 4
9 9 H 1.09002 * 115.55283 * 34.32785 * 8 6 5
10 10 C 1.52996 * 117.49643 * 179.97438 * 8 6 5
11 11 C 1.52998 * 117.49774 * 248.61796 * 8 6 5
12 12 F 1.39897 * 117.49947 * 359.97438 * 11 8 6
13 13 F 1.39897 * 117.49952 * 145.02661 * 11 8 6
14 14 C 1.47157 * 118.02065 * 50.59434 * 5 4 2
15 15 C 1.53258 * 108.40587 * 309.51330 * 14 5 4
16 16 C 1.53003 * 109.35762 * 172.09763 * 15 14 5
17 17 C 1.53184 * 109.34811 * 181.14058 * 16 15 14
18 18 N 1.46933 * 108.76865 * 305.41014 * 17 16 15
19 19 C 1.36935 * 120.64590 * 233.70475 * 18 17 16
20 20 H 1.08004 * 119.99577 * 27.67276 * 19 18 17
21 21 C 1.38811 * 120.00268 * 207.67685 * 19 18 17
22 22 N 1.31617 * 120.00040 * 17.36141 * 21 19 18
23 23 Si 1.86800 * 120.00097 * 197.36756 * 21 19 18
24 24 H 1.48502 * 109.46951 * 59.99556 * 23 21 19
25 25 H 1.48492 * 109.47178 * 179.97438 * 23 21 19
26 26 H 1.48498 * 109.46975 * 299.99771 * 23 21 19
27 27 C 1.46922 * 118.71183 * 53.68989 * 18 17 16
28 28 C 1.52985 * 109.39022 * 292.17581 * 15 14 5
29 29 O 1.42894 * 109.32322 * 52.15764 * 15 14 5
30 30 H 1.08995 * 109.47014 * 299.88817 * 1 2 3
31 31 H 1.09004 * 109.46967 * 59.88064 * 1 2 3
32 32 H 1.08996 * 109.47337 * 179.87918 * 1 2 3
33 33 H 1.09004 * 109.68040 * 307.44981 * 4 2 1
34 34 H 1.09000 * 109.68695 * 68.01077 * 4 2 1
35 35 H 1.09001 * 117.50114 * 214.97956 * 10 8 6
36 36 H 1.09003 * 117.50267 * 359.97438 * 10 8 6
37 37 H 1.09003 * 109.67370 * 69.24071 * 14 5 4
38 38 H 1.08996 * 109.67422 * 189.78124 * 14 5 4
39 39 H 1.09001 * 109.48770 * 301.10604 * 16 15 14
40 40 H 1.09004 * 109.49013 * 61.17454 * 16 15 14
41 41 H 1.08998 * 109.58779 * 185.62643 * 17 16 15
42 42 H 1.09004 * 109.70641 * 65.27171 * 17 16 15
43 43 H 0.96997 * 120.00135 * 180.02562 * 22 21 19
44 44 H 1.08999 * 109.58532 * 186.54197 * 27 18 17
45 45 H 1.08999 * 109.70461 * 66.18472 * 27 18 17
46 46 H 1.08996 * 109.49486 * 298.86564 * 28 15 14
47 47 H 1.09008 * 109.48403 * 58.91386 * 28 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8948 1.0272 0.0000
4 6 2.0420 -0.7251 -1.2497
5 7 3.5013 -0.8751 -1.1339
6 6 4.3192 -0.5018 -2.1380
7 8 5.5194 -0.6330 -2.0231
8 6 3.7424 0.0798 -3.4029
9 1 2.8491 0.6911 -3.2747
10 6 4.7228 0.4846 -4.5054
11 6 3.8478 -0.7590 -4.6782
12 9 4.4727 -2.0068 -4.5808
13 9 2.7901 -0.6828 -5.5907
14 6 4.0410 -1.4453 0.1108
15 6 3.4305 -0.6877 1.2948
16 6 3.8206 -1.3858 2.5992
17 6 3.1868 -0.6449 3.7806
18 7 3.5747 0.7707 3.7139
19 6 4.1589 1.3857 4.7889
20 1 4.7366 0.8066 5.4941
21 6 4.0085 2.7534 4.9723
22 7 3.0528 3.4010 4.3402
23 14 5.1628 3.6750 6.1159
24 1 6.5593 3.5291 5.6325
25 1 4.7944 5.1133 6.1372
26 1 5.0525 3.1150 7.4869
27 6 3.3239 1.5135 2.4713
28 6 3.9559 0.7491 1.3038
29 8 2.0074 -0.6761 1.1656
30 1 -0.3633 0.5121 0.8909
31 1 -0.3633 0.5157 -0.8889
32 1 -0.3634 -1.0276 -0.0022
33 1 1.5763 -1.7081 -1.3204
34 1 1.8024 -0.1401 -2.1377
35 1 4.4743 1.3618 -5.1028
36 1 5.7851 0.3308 -4.3157
37 1 3.7774 -2.5010 0.1753
38 1 5.1254 -1.3358 0.1246
39 1 3.4632 -2.4155 2.5815
40 1 4.9055 -1.3788 2.7051
41 1 3.5418 -1.0774 4.7161
42 1 2.1013 -0.7293 3.7278
43 1 2.9479 4.3568 4.4681
44 1 3.7697 2.5056 2.5424
45 1 2.2501 1.6061 2.3089
46 1 5.0397 0.7393 1.4195
47 1 3.6948 1.2376 0.3649
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001098588584.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:11:01
Heat of formation + Delta-G solvation = -129.232762 kcal
Electronic energy + Delta-G solvation = -32571.575337 eV
Core-core repulsion = 28005.632464 eV
Total energy + Delta-G solvation = -4565.942873 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 344.170 amu
Computer time = 0.94 seconds
Orbital eigenvalues (eV)
-49.83866 -48.51915 -41.98573 -40.32252 -38.01497 -36.73295 -35.87846 -35.12054
-33.19718 -31.83481 -31.26598 -29.08324 -27.45407 -26.54239 -24.76565 -24.15678
-23.63643 -23.07150 -22.10156 -20.62693 -20.21129 -19.35678 -18.88025 -18.28860
-17.91017 -17.22319 -17.07848 -16.94849 -16.74845 -16.29107 -15.91683 -15.75742
-15.31150 -15.19386 -15.16478 -14.97429 -14.88794 -14.74884 -14.65247 -14.45884
-13.90219 -13.54364 -13.36217 -13.28517 -13.15464 -13.07638 -12.91730 -12.83587
-12.61421 -12.56481 -12.29815 -12.26193 -12.02759 -11.94076 -11.75173 -11.55674
-11.39310 -11.22081 -10.91561 -10.82159 -10.52103 -9.61050 -8.67386 -7.87745
-5.32154 0.94932 1.45575 1.48185 1.54664 1.59181 1.94222 2.20709
2.50362 2.68363 3.00781 3.07649 3.26492 3.43617 3.52942 3.62102
3.66673 3.81143 3.85598 3.90770 4.08309 4.14687 4.37892 4.40043
4.42807 4.45597 4.58263 4.59325 4.66846 4.68210 4.72419 4.76907
4.84320 4.92345 4.95412 5.02758 5.09742 5.12695 5.24828 5.33024
5.35654 5.45896 5.63591 5.71165 6.13635 6.34354 6.39190 6.85888
7.14704 7.86370 8.39043 9.18569
Molecular weight = 344.17amu
Principal moments of inertia in cm(-1)
A = 0.016856 B = 0.003125 C = 0.002999
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1660.714700 B = 8959.125417 C = 9332.932500
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.135 4.135
2 C 0.062 3.938
3 H 0.050 0.950
4 C 0.080 3.920
5 N -0.603 5.603
6 C 0.538 3.462
7 O -0.565 6.565
8 C -0.196 4.196
9 H 0.182 0.818
10 C -0.122 4.122
11 C 0.215 3.785
12 F -0.170 7.170
13 F -0.151 7.151
14 C 0.097 3.903
15 C 0.126 3.874
16 C -0.110 4.110
17 C 0.150 3.850
18 N -0.609 5.609
19 C -0.266 4.266
20 H 0.067 0.933
21 C -0.049 4.049
22 N -0.933 5.933
23 Si 0.965 3.035
24 H -0.280 1.280
25 H -0.293 1.293
26 H -0.274 1.274
27 C 0.195 3.805
28 C -0.144 4.144
29 O -0.373 6.373
30 H 0.047 0.953
31 H 0.102 0.898
32 H 0.074 0.926
33 H 0.096 0.904
34 H 0.123 0.877
35 H 0.171 0.829
36 H 0.125 0.875
37 H 0.091 0.909
38 H 0.085 0.915
39 H 0.091 0.909
40 H 0.074 0.926
41 H 0.054 0.946
42 H 0.016 0.984
43 H 0.249 0.751
44 H 0.047 0.953
45 H -0.001 1.001
46 H 0.049 0.951
47 H 0.058 0.942
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -3.662 -8.210 -19.917 21.852
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.193 4.193
2 C 0.004 3.996
3 H 0.068 0.932
4 C -0.042 4.042
5 N -0.335 5.335
6 C 0.327 3.673
7 O -0.444 6.444
8 C -0.218 4.218
9 H 0.199 0.801
10 C -0.160 4.160
11 C 0.178 3.822
12 F -0.151 7.151
13 F -0.132 7.132
14 C -0.026 4.026
15 C 0.086 3.914
16 C -0.149 4.149
17 C 0.024 3.976
18 N -0.332 5.332
19 C -0.396 4.396
20 H 0.085 0.915
21 C -0.245 4.245
22 N -0.579 5.579
23 Si 0.793 3.207
24 H -0.207 1.207
25 H -0.219 1.219
26 H -0.200 1.200
27 C 0.069 3.931
28 C -0.183 4.183
29 O -0.292 6.292
30 H 0.066 0.934
31 H 0.120 0.880
32 H 0.093 0.907
33 H 0.114 0.886
34 H 0.141 0.859
35 H 0.188 0.812
36 H 0.144 0.856
37 H 0.109 0.891
38 H 0.104 0.896
39 H 0.109 0.891
40 H 0.092 0.908
41 H 0.073 0.927
42 H 0.034 0.966
43 H 0.058 0.942
44 H 0.065 0.935
45 H 0.017 0.983
46 H 0.068 0.932
47 H 0.077 0.923
Dipole moment (debyes) X Y Z Total
from point charges -3.216 -8.263 -19.711 21.614
hybrid contribution 0.536 0.710 0.768 1.176
sum -2.680 -7.553 -18.943 20.568
Atomic orbital electron populations
1.21706 0.90518 1.03712 1.03353 1.22637 0.96830 0.95321 0.84830
0.93152 1.22795 0.78065 1.03406 0.99944 1.48109 1.08073 1.61619
1.15689 1.19747 0.85908 0.77330 0.84359 1.90707 1.16143 1.56092
1.81501 1.23843 1.06330 1.03422 0.88191 0.80055 1.24500 0.99262
0.96320 0.95925 1.19804 0.89136 0.81300 0.92009 1.93043 1.81837
1.43988 1.96224 1.93068 1.56756 1.96178 1.67170 1.22300 0.99965
0.97899 0.82428 1.21538 0.81224 0.94099 0.94583 1.21892 1.00883
0.99346 0.92818 1.20882 0.96065 0.84301 0.96307 1.44286 1.70814
1.07294 1.10850 1.19514 1.24066 0.91904 1.04108 0.91541 1.25764
0.98847 0.98839 1.01021 1.70182 1.31975 1.08215 1.47551 0.85375
0.78939 0.77228 0.79131 1.20662 1.21914 1.20008 1.20310 0.95064
0.94189 0.83565 1.22466 1.00019 0.96929 0.98934 1.87999 1.20279
1.76710 1.44241 0.93372 0.87985 0.90725 0.88616 0.85914 0.81178
0.85634 0.89114 0.89630 0.89096 0.90782 0.92710 0.96596 0.94172
0.93507 0.98294 0.93187 0.92315
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.61 9.57 71.98 0.69 -1.92 16
2 C 0.06 1.52 3.01 30.69 0.09 1.61 16
3 H 0.05 1.43 6.29 -2.39 -0.02 1.42 16
4 C 0.08 1.45 5.84 86.35 0.50 1.96 16
5 N -0.60 -14.74 2.52 -817.41 -2.06 -16.80 16
6 C 0.54 13.68 7.13 87.66 0.62 14.31 16
7 O -0.57 -18.74 15.73 -3.01 -0.05 -18.78 16
8 C -0.20 -3.19 5.16 -11.54 -0.06 -3.25 16
9 H 0.18 1.72 6.55 -2.39 -0.02 1.70 16
10 C -0.12 -1.61 10.02 30.61 0.31 -1.31 16
11 C 0.21 3.67 5.20 30.61 0.16 3.83 16
12 F -0.17 -4.01 17.13 44.97 0.77 -3.24 16
13 F -0.15 -2.43 17.60 44.97 0.79 -1.64 16
14 C 0.10 2.71 5.29 86.34 0.46 3.16 16
15 C 0.13 4.11 0.68 -10.71 -0.01 4.11 16
16 C -0.11 -3.70 5.10 30.66 0.16 -3.54 16
17 C 0.15 6.36 6.28 86.36 0.54 6.90 16
18 N -0.61 -31.28 2.99 -699.10 -2.09 -33.37 16
19 C -0.27 -14.91 9.59 84.03 0.81 -14.10 16
20 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16
21 C -0.05 -2.79 4.91 84.86 0.42 -2.38 16
22 N -0.93 -55.76 11.19 21.65 0.24 -55.51 16
23 Si 0.97 45.44 29.59 68.60 2.03 47.47 16
24 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16
25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16
26 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16
27 C 0.19 9.60 5.08 86.36 0.44 10.04 16
28 C -0.14 -5.64 4.33 30.65 0.13 -5.50 16
29 O -0.37 -11.96 8.65 -148.98 -1.29 -13.25 16
30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16
31 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16
32 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16
33 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16
34 H 0.12 1.40 5.59 -2.39 -0.01 1.38 16
35 H 0.17 0.96 8.14 -2.39 -0.02 0.94 16
36 H 0.13 2.02 7.67 -2.39 -0.02 2.01 16
37 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16
38 H 0.09 2.67 7.07 -2.39 -0.02 2.66 16
39 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16
40 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16
41 H 0.05 2.25 7.93 -2.39 -0.02 2.23 16
42 H 0.02 0.71 7.83 -2.38 -0.02 0.69 16
43 H 0.25 14.43 8.31 -92.71 -0.77 13.66 16
44 H 0.05 2.64 6.03 -2.39 -0.01 2.63 16
45 H 0.00 -0.05 7.83 -2.39 -0.02 -0.07 16
46 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16
47 H 0.06 2.14 6.16 -2.38 -0.01 2.12 16
Total: -1.00 -73.47 372.33 4.59 -68.88
By element:
Atomic # 1 Polarization: 11.34 SS G_CDS: 0.99 Total: 12.33 kcal
Atomic # 6 Polarization: 8.66 SS G_CDS: 5.26 Total: 13.92 kcal
Atomic # 7 Polarization: -101.77 SS G_CDS: -3.91 Total: -105.68 kcal
Atomic # 8 Polarization: -30.70 SS G_CDS: -1.34 Total: -32.04 kcal
Atomic # 9 Polarization: -6.44 SS G_CDS: 1.56 Total: -4.88 kcal
Atomic # 14 Polarization: 45.44 SS G_CDS: 2.03 Total: 47.47 kcal
Total: -73.47 4.59 -68.88 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001098588584.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.353 kcal
(2) G-P(sol) polarization free energy of solvation -73.468 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.821 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.879 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.233 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.95 seconds