Wall clock time and date at job start Wed Apr 1 2020 04:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 119.99789 * 2 1 4 4 H 1.48506 * 109.46931 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47105 * 299.99311 * 3 2 1 6 6 H 1.48494 * 109.47346 * 59.99688 * 3 2 1 7 7 C 1.38813 * 120.00200 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99732 * 180.02562 * 7 2 1 9 9 N 1.36936 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99870 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46927 * 179.97438 * 10 9 7 12 12 C 1.35350 * 126.75309 * 95.29497 * 11 10 9 13 13 N 1.35307 * 106.17651 * 180.12296 * 12 11 10 14 14 C 1.46504 * 125.86851 * 179.90395 * 13 12 11 15 15 H 1.08996 * 110.63797 * 203.02882 * 14 13 12 16 16 C 1.55155 * 110.71889 * 326.16972 * 14 13 12 17 17 C 1.54912 * 101.57968 * 154.04276 * 16 14 13 18 18 N 1.47426 * 104.83261 * 322.99067 * 17 16 14 19 19 C 1.34780 * 125.64645 * 203.86243 * 18 17 16 20 20 O 1.21289 * 119.99749 * 180.02562 * 19 18 17 21 21 C 1.50692 * 120.00414 * 0.02590 * 19 18 17 22 22 C 1.50692 * 109.47453 * 179.97438 * 21 19 18 23 23 C 1.34854 * 125.89222 * 274.69035 * 22 21 19 24 24 C 1.40891 * 107.41761 * 179.88673 * 23 22 21 25 25 C 1.34849 * 107.41932 * 0.37492 * 24 23 22 26 26 N 1.36343 * 108.21519 * 359.77522 * 25 24 23 27 27 H 0.97000 * 125.63489 * 179.97438 * 26 25 24 28 28 C 1.47024 * 108.70449 * 24.12870 * 18 17 16 29 29 N 1.28718 * 108.26411 * 359.63899 * 13 12 11 30 30 N 1.28632 * 110.17705 * 0.22935 * 29 13 12 31 31 H 0.97002 * 120.00106 * 0.02562 * 1 2 3 32 32 H 0.96999 * 120.00400 * 359.97438 * 9 7 2 33 33 H 1.08997 * 109.47692 * 59.99820 * 10 9 7 34 34 H 1.09003 * 109.47125 * 299.99523 * 10 9 7 35 35 H 1.08006 * 126.91451 * 0.02562 * 12 11 10 36 36 H 1.08997 * 111.00368 * 35.97468 * 16 14 13 37 37 H 1.08989 * 111.00661 * 272.11597 * 16 14 13 38 38 H 1.09002 * 110.36496 * 204.15483 * 17 16 14 39 39 H 1.08997 * 110.36790 * 81.83118 * 17 16 14 40 40 H 1.08999 * 109.46911 * 300.00252 * 21 19 18 41 41 H 1.09007 * 109.47390 * 59.99552 * 21 19 18 42 42 H 1.08002 * 126.28810 * 0.02567 * 23 22 21 43 43 H 1.07997 * 126.28803 * 180.17514 * 24 23 22 44 44 H 1.07992 * 125.89104 * 179.73469 * 25 24 23 45 45 H 1.08995 * 109.88316 * 118.35549 * 28 18 17 46 46 H 1.09002 * 109.88101 * 239.52444 * 28 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0788 -4.8022 0.0012 12 6 0.6282 -5.4830 -1.0783 13 7 -0.2303 -6.4154 -0.6045 14 6 -0.9695 -7.3902 -1.4106 15 1 -1.8572 -7.7336 -0.8796 16 6 -1.3527 -6.7860 -2.7874 17 6 -1.4667 -8.0580 -3.6643 18 7 -0.3937 -8.9464 -3.1818 19 6 0.1883 -9.9328 -3.8923 20 8 1.0653 -10.6046 -3.3917 21 6 -0.2507 -10.2012 -5.3087 22 6 0.5507 -11.3449 -5.8748 23 6 1.7621 -11.2484 -6.4594 24 6 2.1507 -12.5476 -6.8416 25 6 1.1583 -13.3875 -6.4836 26 7 0.1735 -12.6550 -5.8898 27 1 -0.6582 -13.0077 -5.5366 28 6 -0.0679 -8.5823 -1.7951 29 7 -0.2816 -6.3025 0.6767 30 7 0.4878 -5.3494 1.0693 31 1 -0.4850 0.8401 -0.0004 32 1 0.3556 -2.3881 0.0005 33 1 2.6849 -3.7145 0.8904 34 1 2.6848 -3.7145 -0.8895 35 1 0.8981 -5.3148 -2.1105 36 1 -0.5677 -6.1261 -3.1566 37 1 -2.3071 -6.2627 -2.7323 38 1 -1.3105 -7.8101 -4.7142 39 1 -2.4400 -8.5286 -3.5254 40 1 -1.3097 -10.4593 -5.3181 41 1 -0.0888 -9.3096 -5.9144 42 1 2.3309 -10.3420 -6.6055 43 1 3.0724 -12.8202 -7.3340 44 1 1.1456 -14.4558 -6.6407 45 1 -0.2667 -9.4257 -1.1339 46 1 0.9804 -8.2922 -1.7245 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098784674.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:17 Heat of formation + Delta-G solvation = 140.984655 kcal Electronic energy + Delta-G solvation = -28650.717981 eV Core-core repulsion = 24579.474552 eV Total energy + Delta-G solvation = -4071.243429 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.08531 -41.52852 -40.34566 -38.07260 -35.08933 -34.10018 -32.49489 -31.91314 -31.22478 -30.91192 -29.98044 -29.34637 -26.97567 -25.87772 -24.38110 -23.22275 -22.74418 -21.03753 -20.90217 -20.72623 -20.54080 -19.93390 -17.97731 -17.83462 -17.51497 -17.12374 -16.29307 -16.00077 -15.73061 -14.98213 -14.81040 -14.53155 -14.22880 -14.13249 -13.98070 -13.77483 -13.68746 -13.33692 -13.21121 -13.15949 -12.89666 -12.66829 -12.55288 -12.54216 -12.27115 -12.03608 -12.01659 -11.53286 -11.26122 -10.90180 -10.82646 -10.48727 -10.37246 -10.06274 -9.91721 -9.73637 -9.24662 -9.12562 -8.90429 -8.86390 -8.36217 -6.91822 -5.74335 -3.03804 1.69052 1.80462 2.10369 2.16883 2.57675 2.81196 2.88043 2.98987 3.45500 3.51393 3.53605 3.65088 3.73831 4.18370 4.21655 4.35080 4.40830 4.49665 4.56480 4.62803 4.73535 4.81339 4.88699 4.96130 5.07203 5.15744 5.21963 5.26175 5.29846 5.33569 5.42085 5.48711 5.58106 5.62886 5.81750 5.93700 6.02241 6.16958 6.37987 6.64664 6.67085 6.71317 6.77621 6.80378 6.88865 7.25149 7.66942 7.72042 8.42914 8.79585 9.54973 10.10354 10.46504 11.48475 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.018045 B = 0.001849 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.345127 B =15142.469967 C =15745.699392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.239 4.239 8 H 0.074 0.926 9 N -0.726 5.726 10 C 0.232 3.768 11 C -0.002 4.002 12 C -0.042 4.042 13 N -0.295 5.295 14 C 0.138 3.862 15 H 0.130 0.870 16 C -0.144 4.144 17 C 0.100 3.900 18 N -0.622 5.622 19 C 0.529 3.471 20 O -0.518 6.518 21 C -0.064 4.064 22 C 0.025 3.975 23 C -0.176 4.176 24 C -0.200 4.200 25 C -0.010 4.010 26 N -0.553 5.553 27 H 0.411 0.589 28 C 0.102 3.898 29 N -0.093 5.093 30 N -0.250 5.250 31 H 0.254 0.746 32 H 0.385 0.615 33 H 0.040 0.960 34 H 0.038 0.962 35 H 0.187 0.813 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.117 0.883 42 H 0.133 0.867 43 H 0.135 0.865 44 H 0.163 0.837 45 H 0.085 0.915 46 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.281 -26.949 -16.736 32.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.092 0.908 9 N -0.370 5.370 10 C 0.103 3.897 11 C -0.139 4.139 12 C -0.192 4.192 13 N -0.089 5.089 14 C 0.034 3.966 15 H 0.148 0.852 16 C -0.183 4.183 17 C -0.023 4.023 18 N -0.358 5.358 19 C 0.317 3.683 20 O -0.392 6.392 21 C -0.104 4.104 22 C -0.088 4.088 23 C -0.201 4.201 24 C -0.225 4.225 25 C -0.141 4.141 26 N -0.148 5.148 27 H 0.247 0.753 28 C -0.022 4.022 29 N -0.071 5.071 30 N -0.118 5.118 31 H 0.064 0.936 32 H 0.219 0.781 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.204 0.796 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.135 0.865 42 H 0.151 0.849 43 H 0.153 0.847 44 H 0.181 0.819 45 H 0.103 0.897 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.357 -27.883 -15.142 32.359 hybrid contribution 0.051 1.141 -0.841 1.418 sum -6.306 -26.742 -15.983 31.786 Atomic orbital electron populations 1.69692 1.05167 1.25507 1.57701 1.24758 0.95532 0.97722 1.02954 0.86084 0.78805 0.83969 0.77129 1.20453 1.21932 1.21860 1.19286 0.91156 0.83800 1.42716 0.90806 1.42303 1.05964 0.99245 1.89523 1.18965 0.90043 0.81370 0.99357 1.22476 1.02440 1.00654 0.88339 1.23272 0.98700 0.95128 1.02075 1.47089 1.30728 1.24423 1.06619 1.22481 0.94873 0.87399 0.91863 0.85212 1.23303 1.05224 0.97725 0.92028 1.22420 0.91106 0.89150 0.99612 1.48423 1.39058 1.34513 1.13845 1.20336 0.81689 0.78769 0.87530 1.90792 1.29940 1.47337 1.71152 1.20065 1.00064 0.97594 0.92713 1.19437 0.97834 0.84152 1.07372 1.20671 0.95592 0.98237 1.05615 1.20898 1.00298 0.93047 1.08247 1.21802 0.90468 0.97379 1.04482 1.41860 1.18217 1.06633 1.48116 0.75325 1.22187 1.00022 0.96642 0.83371 1.78295 1.19765 1.16966 0.92105 1.75112 1.06518 1.03895 1.26235 0.93592 0.78117 0.94241 0.94424 0.79602 0.88465 0.87625 0.89056 0.90124 0.88247 0.86504 0.84883 0.84712 0.81935 0.89673 0.90047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 3 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 7 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.58 16 9 N -0.73 -18.89 5.59 -61.09 -0.34 -19.23 16 10 C 0.23 4.88 6.82 -5.19 -0.04 4.84 16 11 C 0.00 -0.03 6.62 -82.77 -0.55 -0.58 16 12 C -0.04 -0.61 10.59 -17.05 -0.18 -0.79 16 13 N -0.29 -3.95 3.29 -52.98 -0.17 -4.12 16 14 C 0.14 1.15 3.97 -66.09 -0.26 0.89 16 15 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 16 C -0.14 -0.80 6.49 -24.58 -0.16 -0.96 16 17 C 0.10 0.36 6.69 -2.53 -0.02 0.35 16 18 N -0.62 -4.40 3.33 -170.52 -0.57 -4.97 16 19 C 0.53 4.70 7.84 -10.99 -0.09 4.62 16 20 O -0.52 -7.15 16.36 5.55 0.09 -7.06 16 21 C -0.06 -0.35 5.25 -29.04 -0.15 -0.50 16 22 C 0.02 0.20 5.66 -81.79 -0.46 -0.26 16 23 C -0.18 -1.69 10.76 -39.78 -0.43 -2.12 16 24 C -0.20 -1.78 10.86 -39.78 -0.43 -2.21 16 25 C -0.01 -0.07 11.94 -16.75 -0.20 -0.27 16 26 N -0.55 -3.80 6.07 -9.12 -0.06 -3.85 16 27 H 0.41 1.65 8.96 -40.82 -0.37 1.29 16 28 C 0.10 0.90 6.62 -3.06 -0.02 0.88 16 29 N -0.09 -1.61 13.17 60.35 0.79 -0.82 16 30 N -0.25 -5.08 12.41 33.29 0.41 -4.66 16 31 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 32 H 0.39 10.78 7.66 -40.82 -0.31 10.46 16 33 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.19 2.13 7.02 -52.48 -0.37 1.77 16 36 H 0.10 0.62 6.41 -51.93 -0.33 0.28 16 37 H 0.11 0.49 8.14 -51.94 -0.42 0.07 16 38 H 0.09 0.16 7.49 -51.93 -0.39 -0.23 16 39 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 40 H 0.10 0.27 8.14 -51.93 -0.42 -0.16 16 41 H 0.12 0.42 7.85 -51.92 -0.41 0.01 16 42 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 43 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 44 H 0.16 0.70 8.06 -52.49 -0.42 0.28 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.08 0.90 8.03 -51.93 -0.42 0.48 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -39.16 390.47 -7.85 -47.01 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -6.37 Total: 5.68 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: -3.23 Total: -3.50 kcal Atomic # 7 Polarization: -66.25 SS G_CDS: 0.79 Total: -65.46 kcal Atomic # 8 Polarization: -7.15 SS G_CDS: 0.09 Total: -7.06 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -39.16 -7.85 -47.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098784674.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.993 kcal (2) G-P(sol) polarization free energy of solvation -39.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 140.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds