Wall clock time and date at job start Wed Apr 1 2020 03:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47210 * 2 1 4 4 F 1.39894 * 109.47449 * 239.99622 * 2 1 3 5 5 C 1.53007 * 109.46936 * 119.99556 * 2 1 3 6 6 C 1.53004 * 109.47220 * 185.00033 * 5 2 1 7 7 N 1.46897 * 109.46941 * 180.02562 * 6 5 2 8 8 C 1.48519 * 111.00240 * 305.40154 * 7 6 5 9 9 C 1.54299 * 104.69150 * 200.77128 * 8 7 6 10 10 H 1.08998 * 112.88297 * 261.53972 * 9 8 7 11 11 C 1.53767 * 109.08126 * 136.30718 * 9 8 7 12 12 N 1.47205 * 106.40288 * 229.10012 * 11 9 8 13 13 C 1.34777 * 126.70388 * 211.28866 * 12 11 9 14 14 O 1.21283 * 120.00463 * 180.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 359.74393 * 13 12 11 16 16 S 1.80997 * 109.47151 * 180.27780 * 15 13 12 17 17 C 1.76196 * 100.00314 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00626 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00584 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46793 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99523 * 21 19 17 24 24 H 1.48500 * 109.47237 * 240.00020 * 21 19 17 25 25 C 1.47205 * 106.59656 * 31.54372 * 12 11 9 26 26 C 1.54039 * 106.25966 * 328.37772 * 25 12 11 27 27 C 1.53005 * 112.20259 * 256.84183 * 26 25 12 28 28 C 1.48524 * 110.99663 * 189.99990 * 7 6 5 29 29 H 1.08995 * 109.47513 * 300.00240 * 1 2 3 30 30 H 1.08997 * 109.46971 * 60.00438 * 1 2 3 31 31 H 1.09008 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46859 * 65.00383 * 5 2 1 33 33 H 1.09000 * 109.47123 * 305.00475 * 5 2 1 34 34 H 1.09006 * 109.46753 * 60.00179 * 6 5 2 35 35 H 1.08997 * 109.46938 * 300.00247 * 6 5 2 36 36 H 1.09005 * 110.39160 * 81.96886 * 8 7 6 37 37 H 1.08999 * 110.39928 * 319.57974 * 8 7 6 38 38 H 1.08998 * 110.07410 * 109.86323 * 11 9 8 39 39 H 1.08997 * 110.11688 * 348.35219 * 11 9 8 40 40 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 41 41 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 42 42 H 0.97003 * 120.00297 * 179.97438 * 20 19 17 43 43 H 1.09003 * 110.06638 * 87.68611 * 25 12 11 44 44 H 1.09004 * 110.07200 * 209.21572 * 25 12 11 45 45 H 1.09008 * 109.46600 * 178.21610 * 27 26 25 46 46 H 1.08991 * 109.47009 * 298.21512 * 27 26 25 47 47 H 1.08993 * 109.47174 * 58.22018 * 27 26 25 48 48 H 1.09002 * 110.39499 * 40.42784 * 28 7 6 49 49 H 1.08996 * 110.49656 * 278.08429 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7212 1.2494 6 6 3.5648 -0.6133 1.3139 7 7 4.0544 -1.3062 2.5130 8 6 3.3845 -0.7929 3.7352 9 6 4.3279 -1.1837 4.8919 10 1 4.0145 -2.0923 5.4060 11 6 4.4621 0.0071 5.8554 12 7 5.9036 0.1924 6.0892 13 6 6.4844 0.6543 7.2143 14 8 7.6911 0.7591 7.2748 15 6 5.6338 1.0464 8.3949 16 16 6.6979 1.6299 9.7378 17 6 5.4784 2.0104 10.9512 18 1 4.4321 1.8561 10.7323 19 6 5.8622 2.5076 12.1890 20 7 7.1375 2.6943 12.4565 21 14 4.5694 2.9103 13.4757 22 1 3.2200 2.6128 12.9316 23 1 4.8063 2.0884 14.6896 24 1 4.6539 4.3503 13.8286 25 6 6.5865 -0.2194 4.8518 26 6 5.7237 -1.3359 4.2341 27 6 6.3226 -2.7247 4.4659 28 6 5.4946 -1.0231 2.7405 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7516 -1.7714 1.2057 33 1 1.6052 -0.2617 2.1370 34 1 3.8531 0.4371 1.3575 35 1 3.9994 -1.0728 0.4262 36 1 2.4112 -1.2669 3.8623 37 1 3.2764 0.2904 3.6827 38 1 3.9560 -0.2132 6.7953 39 1 4.0381 0.9041 5.4040 40 1 4.9496 1.8426 8.1014 41 1 5.0620 0.1825 8.7338 42 1 7.4058 3.0421 13.3213 43 1 6.6580 0.6244 4.1655 44 1 7.5816 -0.5998 5.0826 45 1 5.6628 -3.4806 4.0398 46 1 7.2997 -2.7835 3.9867 47 1 6.4316 -2.8992 5.5362 48 1 5.7130 0.0246 2.5341 49 1 6.1135 -1.6691 2.1179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101135540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:11 Heat of formation + Delta-G solvation = -87.077282 kcal Electronic energy + Delta-G solvation = -28000.268285 eV Core-core repulsion = 24002.366587 eV Total energy + Delta-G solvation = -3997.901699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.02961 -40.98979 -38.71393 -36.61853 -34.41385 -32.77984 -32.44620 -31.33113 -29.67056 -29.10024 -26.57965 -26.29690 -25.51032 -24.78438 -22.55290 -21.96240 -21.16169 -19.32923 -19.25223 -17.63680 -17.12031 -16.80037 -16.41623 -15.93807 -15.72285 -15.37637 -15.31078 -14.87171 -14.82169 -14.62993 -14.23877 -13.86114 -13.70586 -13.56790 -13.28138 -12.98419 -12.95602 -12.79366 -12.70119 -12.50546 -12.36264 -12.18613 -11.95355 -11.71108 -11.63017 -11.38289 -11.20297 -11.18160 -11.08698 -11.03972 -11.00550 -10.87544 -10.81818 -10.73998 -9.82291 -9.43580 -9.09176 -8.87530 -8.56925 -8.24857 -6.52256 -6.23449 -3.94207 2.88067 3.01663 3.20082 3.24512 3.29604 3.46622 3.60063 3.93531 4.08651 4.18281 4.19004 4.23868 4.29807 4.43314 4.46414 4.72204 4.77696 4.80162 4.88676 4.92646 4.97131 5.03625 5.06973 5.11733 5.16073 5.27535 5.33270 5.37590 5.41501 5.45224 5.50568 5.53001 5.55366 5.60809 5.66684 5.70427 5.72468 5.81393 5.85233 5.88754 5.90922 6.09234 6.10757 6.36751 6.41423 6.60319 7.57968 7.67093 8.33591 8.52824 9.21854 10.84032 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.002075 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.836933 B =13490.510371 C =14692.083605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.081 0.919 4 F -0.214 7.214 5 C -0.147 4.147 6 C 0.043 3.957 7 N -0.507 5.507 8 C 0.037 3.963 9 C -0.097 4.097 10 H 0.100 0.900 11 C 0.105 3.895 12 N -0.624 5.624 13 C 0.551 3.449 14 O -0.515 6.515 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.114 3.886 26 C -0.072 4.072 27 C -0.126 4.126 28 C 0.044 3.956 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.038 0.962 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.051 0.949 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.064 0.936 44 H 0.082 0.918 45 H 0.064 0.936 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.050 0.950 49 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.482 -8.428 -25.253 29.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.052 3.948 3 H 0.099 0.901 4 F -0.195 7.195 5 C -0.185 4.185 6 C -0.086 4.086 7 N -0.230 5.230 8 C -0.091 4.091 9 C -0.117 4.117 10 H 0.119 0.881 11 C -0.019 4.019 12 N -0.360 5.360 13 C 0.340 3.660 14 O -0.388 6.388 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.009 4.009 26 C -0.073 4.073 27 C -0.183 4.183 28 C -0.084 4.084 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.056 0.944 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.085 0.915 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.078 0.922 43 H 0.082 0.918 44 H 0.101 0.899 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -10.588 -8.743 -25.052 28.568 hybrid contribution -2.152 1.077 0.760 2.523 sum -12.740 -7.666 -24.292 28.481 Atomic orbital electron populations 1.22372 0.94149 1.03730 1.03528 1.21558 0.94934 0.96169 0.82174 0.90060 1.92822 1.90264 1.83369 1.53077 1.22277 0.95839 1.02841 0.97508 1.22298 0.94891 0.96899 0.94477 1.65444 1.03299 1.52546 1.01732 1.23263 0.98221 0.98303 0.89263 1.22781 0.94628 0.98882 0.95399 0.88148 1.22200 0.82707 0.97015 0.99934 1.48540 1.07215 1.66690 1.13603 1.20034 0.88359 0.75866 0.81748 1.90713 1.14438 1.52370 1.81320 1.23505 1.03463 1.04176 0.98550 1.85416 1.09526 1.82837 1.05618 1.22891 0.94252 1.50326 1.00776 0.90891 1.25002 0.96050 0.94901 0.97692 1.70030 1.14786 1.42402 1.23018 0.86109 0.80679 0.78176 0.80479 1.19622 1.20538 1.20559 1.22169 0.97280 0.95580 0.85915 1.22075 0.94829 0.96296 0.94120 1.21657 1.00472 0.94071 1.02130 1.23270 0.89814 0.99923 0.95345 0.90601 0.91398 0.91278 0.89679 0.89917 0.94390 0.89924 0.89661 0.93130 0.90010 0.91512 0.89352 0.89282 0.92218 0.91834 0.89924 0.91675 0.92250 0.92103 0.93157 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.79 9.65 37.16 0.36 -0.43 16 2 C 0.09 0.50 3.96 -26.73 -0.11 0.39 16 3 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 4 F -0.21 -1.82 16.76 2.25 0.04 -1.78 16 5 C -0.15 -0.82 4.69 -26.73 -0.13 -0.94 16 6 C 0.04 0.29 4.97 -3.82 -0.02 0.27 16 7 N -0.51 -3.92 5.49 -230.14 -1.26 -5.18 16 8 C 0.04 0.27 4.65 -2.25 -0.01 0.26 16 9 C -0.10 -0.84 3.72 -88.46 -0.33 -1.17 16 10 H 0.10 0.86 7.90 -51.93 -0.41 0.45 16 11 C 0.11 1.12 6.37 -3.26 -0.02 1.10 16 12 N -0.62 -9.02 3.32 -171.44 -0.57 -9.59 16 13 C 0.55 10.70 7.90 -10.98 -0.09 10.62 16 14 O -0.51 -12.04 16.09 5.55 0.09 -11.95 16 15 C -0.15 -3.01 5.13 36.01 0.18 -2.82 16 16 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 17 C -0.53 -15.19 9.50 30.94 0.29 -14.89 16 18 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -26.13 13.22 55.49 0.73 -25.39 16 21 Si 0.92 21.32 29.55 -169.99 -5.02 16.30 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 25 C 0.11 1.38 6.21 -3.11 -0.02 1.36 16 26 C -0.07 -0.66 1.08 -152.20 -0.16 -0.82 16 27 C -0.13 -1.13 8.58 37.16 0.32 -0.81 16 28 C 0.04 0.36 5.67 -2.24 -0.01 0.34 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.08 0.39 6.84 -51.93 -0.35 0.03 16 34 H 0.04 0.25 7.88 -51.93 -0.41 -0.16 16 35 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 36 H 0.09 0.54 7.65 -51.93 -0.40 0.14 16 37 H 0.05 0.36 7.00 -51.93 -0.36 -0.01 16 38 H 0.08 0.86 7.32 -51.93 -0.38 0.48 16 39 H 0.07 0.64 7.10 -51.93 -0.37 0.28 16 40 H 0.09 1.68 8.14 -51.91 -0.42 1.26 16 41 H 0.09 1.69 7.87 -51.92 -0.41 1.28 16 42 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.06 0.73 7.10 -51.93 -0.37 0.36 16 44 H 0.08 1.12 7.62 -51.93 -0.40 0.72 16 45 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 46 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.05 0.41 6.82 -51.93 -0.35 0.05 16 49 H 0.09 0.65 7.93 -51.93 -0.41 0.24 16 LS Contribution 400.27 15.07 6.03 6.03 Total: -1.00 -34.20 400.27 -10.39 -44.59 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -8.38 Total: -3.59 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: 0.17 Total: -5.57 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: -1.10 Total: -40.16 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.09 Total: -11.95 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.20 -10.39 -44.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101135540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.485 kcal (2) G-P(sol) polarization free energy of solvation -34.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds