Wall clock time and date at job start Wed Apr 1 2020 03:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47210 * 2 1 4 4 F 1.39894 * 109.47449 * 239.99622 * 2 1 3 5 5 C 1.53007 * 109.46936 * 119.99556 * 2 1 3 6 6 C 1.53004 * 109.47220 * 185.00033 * 5 2 1 7 7 N 1.46897 * 109.46941 * 180.02562 * 6 5 2 8 8 C 1.48519 * 111.00240 * 305.40154 * 7 6 5 9 9 C 1.54299 * 104.69150 * 200.77128 * 8 7 6 10 10 H 1.08998 * 112.88297 * 261.53972 * 9 8 7 11 11 C 1.53767 * 109.08126 * 136.30718 * 9 8 7 12 12 N 1.47205 * 106.40288 * 229.10012 * 11 9 8 13 13 C 1.34777 * 126.70388 * 211.28866 * 12 11 9 14 14 O 1.21283 * 120.00463 * 180.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 359.74393 * 13 12 11 16 16 S 1.80997 * 109.47151 * 180.27780 * 15 13 12 17 17 C 1.76196 * 100.00314 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00626 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00584 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46793 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99523 * 21 19 17 24 24 H 1.48500 * 109.47237 * 240.00020 * 21 19 17 25 25 C 1.47205 * 106.59656 * 31.54372 * 12 11 9 26 26 C 1.54039 * 106.25966 * 328.37772 * 25 12 11 27 27 C 1.53005 * 112.20259 * 256.84183 * 26 25 12 28 28 C 1.48524 * 110.99663 * 189.99990 * 7 6 5 29 29 H 1.08995 * 109.47513 * 300.00240 * 1 2 3 30 30 H 1.08997 * 109.46971 * 60.00438 * 1 2 3 31 31 H 1.09008 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.46859 * 65.00383 * 5 2 1 33 33 H 1.09000 * 109.47123 * 305.00475 * 5 2 1 34 34 H 1.09006 * 109.46753 * 60.00179 * 6 5 2 35 35 H 1.08997 * 109.46938 * 300.00247 * 6 5 2 36 36 H 1.09005 * 110.39160 * 81.96886 * 8 7 6 37 37 H 1.08999 * 110.39928 * 319.57974 * 8 7 6 38 38 H 1.08998 * 110.07410 * 109.86323 * 11 9 8 39 39 H 1.08997 * 110.11688 * 348.35219 * 11 9 8 40 40 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 41 41 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 42 42 H 0.97003 * 120.00297 * 179.97438 * 20 19 17 43 43 H 1.09003 * 110.06638 * 87.68611 * 25 12 11 44 44 H 1.09004 * 110.07200 * 209.21572 * 25 12 11 45 45 H 1.09008 * 109.46600 * 178.21610 * 27 26 25 46 46 H 1.08991 * 109.47009 * 298.21512 * 27 26 25 47 47 H 1.08993 * 109.47174 * 58.22018 * 27 26 25 48 48 H 1.09002 * 110.39499 * 40.42784 * 28 7 6 49 49 H 1.08996 * 110.49656 * 278.08429 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9964 -0.6595 -1.1422 5 6 2.0399 -0.7212 1.2494 6 6 3.5648 -0.6133 1.3139 7 7 4.0544 -1.3062 2.5130 8 6 3.3845 -0.7929 3.7352 9 6 4.3279 -1.1837 4.8919 10 1 4.0145 -2.0923 5.4060 11 6 4.4621 0.0071 5.8554 12 7 5.9036 0.1924 6.0892 13 6 6.4844 0.6543 7.2143 14 8 7.6911 0.7591 7.2748 15 6 5.6338 1.0464 8.3949 16 16 6.6979 1.6299 9.7378 17 6 5.4784 2.0104 10.9512 18 1 4.4321 1.8561 10.7323 19 6 5.8622 2.5076 12.1890 20 7 7.1375 2.6943 12.4565 21 14 4.5694 2.9103 13.4757 22 1 3.2200 2.6128 12.9316 23 1 4.8063 2.0884 14.6896 24 1 4.6539 4.3503 13.8286 25 6 6.5865 -0.2194 4.8518 26 6 5.7237 -1.3359 4.2341 27 6 6.3226 -2.7247 4.4659 28 6 5.4946 -1.0231 2.7405 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.7516 -1.7714 1.2057 33 1 1.6052 -0.2617 2.1370 34 1 3.8531 0.4371 1.3575 35 1 3.9994 -1.0728 0.4262 36 1 2.4112 -1.2669 3.8623 37 1 3.2764 0.2904 3.6827 38 1 3.9560 -0.2132 6.7953 39 1 4.0381 0.9041 5.4040 40 1 4.9496 1.8426 8.1014 41 1 5.0620 0.1825 8.7338 42 1 7.4058 3.0421 13.3213 43 1 6.6580 0.6244 4.1655 44 1 7.5816 -0.5998 5.0826 45 1 5.6628 -3.4806 4.0398 46 1 7.2997 -2.7835 3.9867 47 1 6.4316 -2.8992 5.5362 48 1 5.7130 0.0246 2.5341 49 1 6.1135 -1.6691 2.1179 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101135540.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:10 Heat of formation + Delta-G solvation = -109.160598 kcal Electronic energy + Delta-G solvation = -28001.225890 eV Core-core repulsion = 24002.366587 eV Total energy + Delta-G solvation = -3998.859303 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -48.56528 -41.88202 -39.99833 -37.50057 -35.16387 -34.59689 -33.53872 -32.10346 -31.08728 -29.71051 -27.81705 -27.34242 -27.08109 -25.56756 -23.31240 -22.47697 -21.74731 -20.68864 -20.13810 -19.45745 -18.12973 -17.57512 -17.27371 -16.89919 -16.72753 -16.61852 -16.51778 -15.98778 -15.82105 -15.59722 -15.39880 -15.08657 -14.63445 -14.53911 -14.30819 -13.92304 -13.79772 -13.62558 -13.55428 -13.30476 -13.28031 -13.14453 -13.07478 -12.92464 -12.74797 -12.61796 -12.52588 -12.29481 -11.95745 -11.84773 -11.76523 -11.69642 -11.65295 -11.52672 -11.41033 -11.16931 -10.97450 -10.29566 -9.80786 -9.43559 -8.69809 -8.35851 -6.14774 1.21985 1.41297 1.44003 1.50989 1.56415 2.04580 2.25847 2.88615 2.98435 3.13653 3.28674 3.39380 3.63535 3.76807 3.80949 3.86557 3.90944 3.99698 4.02677 4.11973 4.12902 4.21034 4.26001 4.34689 4.41070 4.44023 4.57728 4.60862 4.63409 4.67120 4.70064 4.75768 4.82538 4.85565 4.91434 4.98212 5.05111 5.10315 5.14253 5.17578 5.23469 5.29583 5.30882 5.37559 5.40892 5.80681 6.03766 6.18904 6.36616 7.05235 7.06483 8.73697 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.016430 B = 0.002075 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1703.836933 B =13490.510371 C =14692.083605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.082 3.918 3 H 0.092 0.908 4 F -0.233 7.233 5 C -0.139 4.139 6 C 0.044 3.956 7 N -0.512 5.512 8 C 0.042 3.958 9 C -0.091 4.091 10 H 0.106 0.894 11 C 0.098 3.902 12 N -0.615 5.615 13 C 0.549 3.451 14 O -0.567 6.567 15 C -0.119 4.119 16 S -0.152 6.152 17 C -0.544 4.544 18 H 0.084 0.916 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.110 3.890 26 C -0.065 4.065 27 C -0.123 4.123 28 C 0.049 3.951 29 H 0.090 0.910 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.271 0.729 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.043 0.957 48 H 0.052 0.948 49 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.747 -8.646 -26.144 31.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.046 3.954 3 H 0.110 0.890 4 F -0.215 7.215 5 C -0.177 4.177 6 C -0.084 4.084 7 N -0.236 5.236 8 C -0.086 4.086 9 C -0.111 4.111 10 H 0.124 0.876 11 C -0.025 4.025 12 N -0.349 5.349 13 C 0.338 3.662 14 O -0.446 6.446 15 C -0.270 4.270 16 S 0.075 5.925 17 C -0.691 4.691 18 H 0.102 0.898 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.179 1.179 23 H -0.199 1.199 24 H -0.199 1.199 25 C -0.013 4.013 26 C -0.066 4.066 27 C -0.180 4.180 28 C -0.079 4.079 29 H 0.109 0.891 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.119 0.881 37 H 0.076 0.924 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.080 0.920 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -13.902 -8.986 -26.000 30.822 hybrid contribution -1.142 1.095 0.884 1.812 sum -15.044 -7.892 -25.116 30.322 Atomic orbital electron populations 1.22365 0.93168 1.03769 1.04278 1.21771 0.95776 0.96500 0.81389 0.88990 1.92786 1.90586 1.83824 1.54264 1.22217 0.94904 1.02563 0.98030 1.22287 0.95670 0.96840 0.93631 1.65456 1.02929 1.52939 1.02244 1.23277 0.98288 0.98906 0.88091 1.22773 0.94554 0.98234 0.95493 0.87569 1.22547 0.80065 0.98817 1.01039 1.48475 1.09390 1.64404 1.12677 1.19792 0.87506 0.76218 0.82728 1.90691 1.16383 1.55062 1.82427 1.23294 1.02177 1.05094 0.96411 1.85620 1.13623 1.83821 1.09406 1.23212 0.94461 1.50358 1.01111 0.89821 1.26162 0.98491 0.94418 1.00212 1.70195 1.17327 1.43445 1.23839 0.84879 0.77924 0.77999 0.76979 1.17870 1.19937 1.19925 1.22377 0.96912 0.96988 0.84990 1.22015 0.94557 0.95140 0.94928 1.21626 1.01035 0.94219 1.01117 1.23210 0.90432 1.00123 0.94158 0.89114 0.91425 0.91602 0.90389 0.88457 0.94007 0.90901 0.88107 0.92396 0.89480 0.89614 0.87484 0.87472 0.91976 0.90832 0.91912 0.90586 0.91890 0.93746 0.93028 0.89163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.18 9.65 71.98 0.69 -0.48 16 2 C 0.08 0.75 3.96 30.60 0.12 0.87 16 3 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 4 F -0.23 -3.70 16.76 44.97 0.75 -2.94 16 5 C -0.14 -1.19 4.69 30.60 0.14 -1.04 16 6 C 0.04 0.49 4.97 86.30 0.43 0.92 16 7 N -0.51 -6.47 5.49 -882.02 -4.84 -11.31 16 8 C 0.04 0.45 4.65 86.43 0.40 0.86 16 9 C -0.09 -1.32 3.72 -9.39 -0.03 -1.36 16 10 H 0.11 1.49 7.90 -2.39 -0.02 1.47 16 11 C 0.10 1.81 6.37 86.50 0.55 2.37 16 12 N -0.62 -17.15 3.32 -814.70 -2.70 -19.85 16 13 C 0.55 21.44 7.90 87.66 0.69 22.13 16 14 O -0.57 -27.58 16.09 -3.04 -0.05 -27.63 16 15 C -0.12 -4.83 5.13 71.24 0.37 -4.46 16 16 S -0.15 -8.53 20.57 -56.49 -1.16 -9.70 16 17 C -0.54 -31.00 9.50 67.95 0.65 -30.35 16 18 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 19 C 0.01 0.67 5.49 84.86 0.47 1.14 16 20 N -0.91 -56.07 13.22 21.65 0.29 -55.79 16 21 Si 1.00 43.33 29.55 68.60 2.03 45.36 16 22 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 23 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 25 C 0.11 2.58 6.21 86.60 0.54 3.11 16 26 C -0.06 -1.08 1.08 -50.68 -0.05 -1.13 16 27 C -0.12 -2.04 8.58 71.98 0.62 -1.42 16 28 C 0.05 0.67 5.67 86.43 0.49 1.16 16 29 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 0.55 6.84 -2.39 -0.02 0.54 16 34 H 0.04 0.44 7.88 -2.38 -0.02 0.42 16 35 H 0.07 0.97 7.93 -2.39 -0.02 0.95 16 36 H 0.10 0.84 7.65 -2.38 -0.02 0.82 16 37 H 0.06 0.57 7.00 -2.39 -0.02 0.56 16 38 H 0.09 1.57 7.32 -2.39 -0.02 1.55 16 39 H 0.09 1.34 7.10 -2.39 -0.02 1.32 16 40 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 41 H 0.11 3.94 7.87 -2.40 -0.02 3.92 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.07 1.59 7.10 -2.39 -0.02 1.58 16 44 H 0.06 1.73 7.62 -2.38 -0.02 1.71 16 45 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 46 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.05 0.71 6.82 -2.39 -0.02 0.70 16 49 H 0.09 1.19 7.93 -2.39 -0.02 1.17 16 Total: -1.00 -76.79 400.27 1.30 -75.49 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: 0.92 Total: 14.05 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: 6.07 Total: -7.68 kcal Atomic # 7 Polarization: -79.69 SS G_CDS: -7.26 Total: -86.95 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.05 Total: -27.63 kcal Atomic # 9 Polarization: -3.70 SS G_CDS: 0.75 Total: -2.94 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.70 kcal Total: -76.79 1.30 -75.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101135540.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.672 kcal (2) G-P(sol) polarization free energy of solvation -76.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds