Wall clock time and date at job start Wed Apr 1 2020 03:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46979 * 2 1 4 4 F 1.39895 * 109.47176 * 120.00423 * 2 1 3 5 5 C 1.52999 * 109.46821 * 240.00530 * 2 1 3 6 6 C 1.53003 * 109.46811 * 174.99875 * 5 2 1 7 7 N 1.46904 * 109.47214 * 179.97438 * 6 5 2 8 8 C 1.48533 * 110.99907 * 290.12730 * 7 6 5 9 9 C 1.54322 * 104.66985 * 200.80782 * 8 7 6 10 10 H 1.08998 * 111.81862 * 262.42373 * 9 8 7 11 11 C 1.54169 * 109.64808 * 137.84012 * 9 8 7 12 12 C 1.54840 * 104.31872 * 223.30504 * 11 9 8 13 13 C 1.54844 * 102.73889 * 38.18512 * 12 11 9 14 14 C 1.54162 * 104.32159 * 321.81501 * 13 12 11 15 15 N 1.46504 * 111.79700 * 261.29515 * 14 13 12 16 16 C 1.34775 * 119.99561 * 299.22879 * 15 14 13 17 17 O 1.21282 * 120.00577 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99768 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47038 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99871 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00439 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99949 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00229 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99759 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47399 * 299.99573 * 24 22 20 27 27 H 1.48498 * 109.47295 * 60.00179 * 24 22 20 28 28 C 1.48531 * 110.99927 * 174.71931 * 7 6 5 29 29 H 1.09002 * 109.47028 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47095 * 299.99464 * 1 2 3 31 31 H 1.09000 * 109.47111 * 60.00000 * 1 2 3 32 32 H 1.09002 * 109.47704 * 54.99884 * 5 2 1 33 33 H 1.08997 * 109.47197 * 294.99285 * 5 2 1 34 34 H 1.08997 * 109.47436 * 60.00135 * 6 5 2 35 35 H 1.09001 * 109.47476 * 299.99682 * 6 5 2 36 36 H 1.08999 * 110.40011 * 82.00459 * 8 7 6 37 37 H 1.09003 * 110.39328 * 319.60137 * 8 7 6 38 38 H 1.08998 * 110.45888 * 342.01198 * 11 9 8 39 39 H 1.09000 * 110.46130 * 104.59735 * 11 9 8 40 40 H 1.08999 * 110.75888 * 156.49927 * 12 11 9 41 41 H 1.09004 * 110.75902 * 279.68760 * 12 11 9 42 42 H 1.08997 * 110.46342 * 203.10162 * 13 12 11 43 43 H 1.08999 * 110.46279 * 80.52500 * 13 12 11 44 44 H 0.96993 * 120.00065 * 119.22621 * 15 14 13 45 45 H 1.09000 * 109.47235 * 59.99532 * 18 16 15 46 46 H 1.09005 * 109.46867 * 299.99572 * 18 16 15 47 47 H 0.97000 * 120.00071 * 359.97438 * 23 22 20 48 48 H 1.09001 * 110.39662 * 40.40120 * 28 7 6 49 49 H 1.08993 * 110.39867 * 277.98891 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6596 1.1422 5 6 2.0400 -0.7211 -1.2493 6 6 3.5648 -0.6131 -1.3138 7 7 4.0546 -1.3061 -2.5130 8 6 3.8909 -2.7765 -2.3822 9 6 4.8879 -3.3726 -3.3982 10 1 4.4008 -3.6359 -4.3371 11 6 5.6090 -4.5812 -2.7688 12 6 7.0909 -4.3990 -3.1789 13 6 7.2884 -2.8669 -3.0736 14 6 5.9632 -2.2750 -3.5933 15 7 6.0670 -1.8546 -4.9929 16 6 6.9548 -0.9044 -5.3470 17 8 7.6675 -0.3971 -4.5070 18 6 7.0611 -0.4716 -6.7866 19 16 8.3317 0.8084 -6.9394 20 6 8.2462 1.1190 -8.6717 21 1 7.5457 0.5713 -9.2847 22 6 9.0800 2.0668 -9.2488 23 7 9.9342 2.7340 -8.5020 24 14 8.9889 2.3966 -11.0852 25 1 9.9758 3.4447 -11.4495 26 1 9.2966 1.1482 -11.8283 27 1 7.6224 2.8586 -11.4380 28 6 5.5184 -1.1152 -2.6775 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -0.2616 -2.1371 33 1 1.7517 -1.7714 -1.2057 34 1 3.9995 -1.0727 -0.4261 35 1 3.8532 0.4371 -1.3574 36 1 2.8715 -3.0692 -2.6337 37 1 4.1409 -3.0981 -1.3712 38 1 5.5087 -4.5620 -1.6837 39 1 5.2137 -5.5134 -3.1726 40 1 7.7505 -4.9221 -2.4864 41 1 7.2543 -4.7432 -4.2002 42 1 8.1207 -2.5460 -3.7000 43 1 7.4558 -2.5745 -2.0370 44 1 5.4968 -2.2601 -5.6646 45 1 6.1023 -0.0728 -7.1179 46 1 7.3315 -1.3280 -7.4044 47 1 9.9808 2.5635 -7.5482 48 1 6.0207 -1.1794 -1.7122 49 1 5.7255 -0.1559 -3.1516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111600275.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:55 Heat of formation + Delta-G solvation = -102.920280 kcal Electronic energy + Delta-G solvation = -28395.079926 eV Core-core repulsion = 24396.491224 eV Total energy + Delta-G solvation = -3998.588703 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -47.94596 -40.91105 -38.52028 -36.51183 -34.00309 -33.55873 -32.51728 -30.64642 -30.50977 -28.93422 -27.09384 -25.91210 -24.82012 -23.73126 -22.09260 -21.61917 -20.63635 -20.04264 -19.26185 -18.29592 -17.22034 -17.00548 -16.19093 -16.00684 -15.78919 -15.50001 -15.00090 -14.89065 -14.79618 -14.37874 -14.24055 -13.83841 -13.64073 -13.39103 -13.29404 -12.90319 -12.86714 -12.67285 -12.59681 -12.40106 -12.12149 -12.05954 -11.78266 -11.63189 -11.42121 -11.34862 -11.23067 -11.12563 -11.06288 -10.92774 -10.89997 -10.84288 -10.74134 -10.16973 -9.56302 -9.36312 -9.01040 -8.85764 -8.68989 -8.20963 -6.65273 -6.61248 -3.98570 2.93598 3.03147 3.35417 3.38371 3.56203 3.58934 3.62164 4.01992 4.19182 4.26220 4.29918 4.36024 4.39730 4.49726 4.65444 4.81222 4.88664 4.97412 5.00188 5.08613 5.09368 5.14127 5.19300 5.23246 5.25530 5.33386 5.37842 5.43350 5.44431 5.47803 5.56326 5.59886 5.62779 5.67995 5.76619 5.79185 5.81037 5.83852 5.88509 6.01741 6.04890 6.11311 6.14940 6.55849 6.76317 6.76781 7.70530 7.93008 8.51038 8.57414 9.28041 10.82702 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.002402 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.881739 B =11654.068733 C =13051.638264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.086 3.914 3 H 0.084 0.916 4 F -0.217 7.217 5 C -0.140 4.140 6 C 0.042 3.958 7 N -0.509 5.509 8 C 0.037 3.963 9 C -0.096 4.096 10 H 0.091 0.909 11 C -0.117 4.117 12 C -0.124 4.124 13 C -0.125 4.125 14 C 0.180 3.820 15 N -0.717 5.717 16 C 0.533 3.467 17 O -0.515 6.515 18 C -0.131 4.131 19 S -0.115 6.115 20 C -0.607 4.607 21 H 0.065 0.935 22 C 0.035 3.965 23 N -0.884 5.884 24 Si 1.084 2.916 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.285 1.285 28 C 0.034 3.966 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.041 0.959 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.049 0.951 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.399 0.601 45 H 0.091 0.909 46 H 0.090 0.910 47 H 0.278 0.722 48 H 0.052 0.948 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.904 -14.104 15.538 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.050 3.950 3 H 0.102 0.898 4 F -0.198 7.198 5 C -0.178 4.178 6 C -0.086 4.086 7 N -0.232 5.232 8 C -0.091 4.091 9 C -0.115 4.115 10 H 0.110 0.890 11 C -0.155 4.155 12 C -0.162 4.162 13 C -0.164 4.164 14 C 0.093 3.907 15 N -0.370 5.370 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.282 4.282 19 S 0.111 5.889 20 C -0.755 4.755 21 H 0.083 0.917 22 C -0.176 4.176 23 N -0.519 5.519 24 Si 0.910 3.090 25 H -0.203 1.203 26 H -0.212 1.212 27 H -0.211 1.211 28 C -0.095 4.095 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.060 0.940 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.091 0.909 44 H 0.233 0.767 45 H 0.109 0.891 46 H 0.109 0.891 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -16.348 -12.107 15.326 25.470 hybrid contribution -1.477 -2.039 0.507 2.568 sum -17.825 -14.145 15.834 27.722 Atomic orbital electron populations 1.22362 0.94201 1.03545 1.03528 1.21592 0.94868 0.96461 0.82112 0.89790 1.92811 1.90312 1.83417 1.53220 1.22165 0.96020 1.01962 0.97648 1.22264 0.94807 1.00075 0.91504 1.65423 1.14853 1.07129 1.35811 1.23276 0.99680 0.88573 0.97551 1.22726 0.95005 0.94397 0.99404 0.89028 1.22466 0.95537 0.97125 1.00414 1.22528 0.95795 0.96185 1.01652 1.22714 0.97390 0.94560 1.01714 1.21321 0.94680 0.92764 0.81972 1.45897 1.41033 1.41783 1.08287 1.20216 0.79064 0.78311 0.90454 1.90690 1.42371 1.53931 1.51993 1.23324 1.05545 1.04288 0.95060 1.84782 1.45932 1.45622 1.12531 1.23705 1.29283 1.30392 0.92124 0.91677 1.26046 0.92084 0.92157 1.07271 1.70798 1.33484 1.39188 1.08387 0.83337 0.76471 0.76605 0.72630 1.20294 1.21157 1.21140 1.23522 0.86894 1.00620 0.98457 0.91478 0.91458 0.90511 0.89150 0.90824 0.94032 0.90398 0.90103 0.93303 0.91260 0.91238 0.91350 0.91289 0.89917 0.90920 0.76688 0.89052 0.89148 0.91001 0.92940 0.88766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 9.65 37.16 0.36 -0.64 16 2 C 0.09 0.63 3.96 -26.73 -0.11 0.52 16 3 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 4 F -0.22 -2.15 16.76 2.25 0.04 -2.11 16 5 C -0.14 -1.06 5.04 -26.73 -0.13 -1.20 16 6 C 0.04 0.40 4.73 -3.82 -0.02 0.38 16 7 N -0.51 -5.50 5.37 -230.09 -1.24 -6.73 16 8 C 0.04 0.33 5.29 -2.23 -0.01 0.32 16 9 C -0.10 -0.86 3.65 -88.32 -0.32 -1.18 16 10 H 0.09 0.76 7.72 -51.93 -0.40 0.35 16 11 C -0.12 -0.92 6.38 -25.15 -0.16 -1.08 16 12 C -0.12 -1.16 6.90 -24.79 -0.17 -1.33 16 13 C -0.12 -1.53 5.64 -25.15 -0.14 -1.67 16 14 C 0.18 2.15 0.90 -129.52 -0.12 2.03 16 15 N -0.72 -9.59 5.25 -45.48 -0.24 -9.83 16 16 C 0.53 9.66 6.88 -10.98 -0.08 9.58 16 17 O -0.52 -11.03 13.38 5.56 0.07 -10.96 16 18 C -0.13 -2.64 6.16 36.01 0.22 -2.42 16 19 S -0.11 -3.08 19.60 -107.50 -2.11 -5.19 16 20 C -0.61 -17.54 9.50 30.94 0.29 -17.24 16 21 H 0.06 1.80 7.80 -52.48 -0.41 1.39 16 22 C 0.03 1.02 5.49 -17.43 -0.10 0.92 16 23 N -0.88 -27.60 13.67 55.49 0.76 -26.84 16 24 Si 1.08 25.01 29.92 -169.99 -5.09 19.93 16 25 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.29 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.03 0.43 5.34 -2.23 -0.01 0.42 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.07 0.55 7.25 -51.93 -0.38 0.18 16 34 H 0.04 0.42 7.67 -51.93 -0.40 0.02 16 35 H 0.08 0.78 8.13 -51.93 -0.42 0.36 16 36 H 0.08 0.63 7.75 -51.93 -0.40 0.23 16 37 H 0.05 0.42 6.93 -51.93 -0.36 0.06 16 38 H 0.07 0.52 7.25 -51.93 -0.38 0.14 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.08 1.27 6.67 -51.93 -0.35 0.92 16 43 H 0.07 0.87 7.25 -51.93 -0.38 0.49 16 44 H 0.40 4.36 8.31 -40.82 -0.34 4.02 16 45 H 0.09 1.74 8.14 -51.92 -0.42 1.32 16 46 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 47 H 0.28 8.84 7.13 -40.82 -0.29 8.55 16 48 H 0.05 0.67 7.11 -51.93 -0.37 0.30 16 49 H 0.09 1.53 6.79 -51.93 -0.35 1.18 16 LS Contribution 395.96 15.07 5.97 5.97 Total: -1.00 -34.04 395.96 -10.57 -44.61 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -8.24 Total: 3.75 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: -0.49 Total: -12.58 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: -0.72 Total: -43.40 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.04 Total: -2.11 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.09 Total: 19.93 kcal Atomic # 16 Polarization: -3.08 SS G_CDS: -2.11 Total: -5.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.04 -10.57 -44.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111600275.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.315 kcal (2) G-P(sol) polarization free energy of solvation -34.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.355 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds