Wall clock time and date at job start Wed Apr 1 2020 03:25:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.46979 * 2 1 4 4 F 1.39895 * 109.47176 * 120.00423 * 2 1 3 5 5 C 1.52999 * 109.46821 * 240.00530 * 2 1 3 6 6 C 1.53003 * 109.46811 * 174.99875 * 5 2 1 7 7 N 1.46904 * 109.47214 * 179.97438 * 6 5 2 8 8 C 1.48533 * 110.99907 * 290.12730 * 7 6 5 9 9 C 1.54322 * 104.66985 * 200.80782 * 8 7 6 10 10 H 1.08998 * 111.81862 * 262.42373 * 9 8 7 11 11 C 1.54169 * 109.64808 * 137.84012 * 9 8 7 12 12 C 1.54840 * 104.31872 * 223.30504 * 11 9 8 13 13 C 1.54844 * 102.73889 * 38.18512 * 12 11 9 14 14 C 1.54162 * 104.32159 * 321.81501 * 13 12 11 15 15 N 1.46504 * 111.79700 * 261.29515 * 14 13 12 16 16 C 1.34775 * 119.99561 * 299.22879 * 15 14 13 17 17 O 1.21282 * 120.00577 * 359.97438 * 16 15 14 18 18 C 1.50703 * 119.99768 * 180.02562 * 16 15 14 19 19 S 1.81000 * 109.47038 * 179.97438 * 18 16 15 20 20 C 1.76199 * 99.99871 * 179.97438 * 19 18 16 21 21 H 1.08004 * 120.00439 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99949 * 180.02562 * 20 19 18 23 23 N 1.31625 * 120.00229 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 119.99759 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46845 * 180.02562 * 24 22 20 26 26 H 1.48503 * 109.47399 * 299.99573 * 24 22 20 27 27 H 1.48498 * 109.47295 * 60.00179 * 24 22 20 28 28 C 1.48531 * 110.99927 * 174.71931 * 7 6 5 29 29 H 1.09002 * 109.47028 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47095 * 299.99464 * 1 2 3 31 31 H 1.09000 * 109.47111 * 60.00000 * 1 2 3 32 32 H 1.09002 * 109.47704 * 54.99884 * 5 2 1 33 33 H 1.08997 * 109.47197 * 294.99285 * 5 2 1 34 34 H 1.08997 * 109.47436 * 60.00135 * 6 5 2 35 35 H 1.09001 * 109.47476 * 299.99682 * 6 5 2 36 36 H 1.08999 * 110.40011 * 82.00459 * 8 7 6 37 37 H 1.09003 * 110.39328 * 319.60137 * 8 7 6 38 38 H 1.08998 * 110.45888 * 342.01198 * 11 9 8 39 39 H 1.09000 * 110.46130 * 104.59735 * 11 9 8 40 40 H 1.08999 * 110.75888 * 156.49927 * 12 11 9 41 41 H 1.09004 * 110.75902 * 279.68760 * 12 11 9 42 42 H 1.08997 * 110.46342 * 203.10162 * 13 12 11 43 43 H 1.08999 * 110.46279 * 80.52500 * 13 12 11 44 44 H 0.96993 * 120.00065 * 119.22621 * 15 14 13 45 45 H 1.09000 * 109.47235 * 59.99532 * 18 16 15 46 46 H 1.09005 * 109.46867 * 299.99572 * 18 16 15 47 47 H 0.97000 * 120.00071 * 359.97438 * 23 22 20 48 48 H 1.09001 * 110.39662 * 40.40120 * 28 7 6 49 49 H 1.08993 * 110.39867 * 277.98891 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 9 1.9964 -0.6596 1.1422 5 6 2.0400 -0.7211 -1.2493 6 6 3.5648 -0.6131 -1.3138 7 7 4.0546 -1.3061 -2.5130 8 6 3.8909 -2.7765 -2.3822 9 6 4.8879 -3.3726 -3.3982 10 1 4.4008 -3.6359 -4.3371 11 6 5.6090 -4.5812 -2.7688 12 6 7.0909 -4.3990 -3.1789 13 6 7.2884 -2.8669 -3.0736 14 6 5.9632 -2.2750 -3.5933 15 7 6.0670 -1.8546 -4.9929 16 6 6.9548 -0.9044 -5.3470 17 8 7.6675 -0.3971 -4.5070 18 6 7.0611 -0.4716 -6.7866 19 16 8.3317 0.8084 -6.9394 20 6 8.2462 1.1190 -8.6717 21 1 7.5457 0.5713 -9.2847 22 6 9.0800 2.0668 -9.2488 23 7 9.9342 2.7340 -8.5020 24 14 8.9889 2.3966 -11.0852 25 1 9.9758 3.4447 -11.4495 26 1 9.2966 1.1482 -11.8283 27 1 7.6224 2.8586 -11.4380 28 6 5.5184 -1.1152 -2.6775 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -0.2616 -2.1371 33 1 1.7517 -1.7714 -1.2057 34 1 3.9995 -1.0727 -0.4261 35 1 3.8532 0.4371 -1.3574 36 1 2.8715 -3.0692 -2.6337 37 1 4.1409 -3.0981 -1.3712 38 1 5.5087 -4.5620 -1.6837 39 1 5.2137 -5.5134 -3.1726 40 1 7.7505 -4.9221 -2.4864 41 1 7.2543 -4.7432 -4.2002 42 1 8.1207 -2.5460 -3.7000 43 1 7.4558 -2.5745 -2.0370 44 1 5.4968 -2.2601 -5.6646 45 1 6.1023 -0.0728 -7.1179 46 1 7.3315 -1.3280 -7.4044 47 1 9.9808 2.5635 -7.5482 48 1 6.0207 -1.1794 -1.7122 49 1 5.7255 -0.1559 -3.1516 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111600275.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:54 Heat of formation + Delta-G solvation = -125.886674 kcal Electronic energy + Delta-G solvation = -28396.075824 eV Core-core repulsion = 24396.491224 eV Total energy + Delta-G solvation = -3999.584600 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.62782 -41.92913 -39.82049 -37.34288 -34.82980 -34.72530 -34.64096 -31.73509 -31.32422 -30.12745 -27.98924 -27.03764 -26.74549 -24.49723 -23.08192 -22.28788 -21.45537 -21.16444 -20.37720 -20.30354 -18.30515 -17.65218 -17.57941 -16.92678 -16.73646 -16.57168 -16.24962 -16.05488 -15.73964 -15.63391 -15.41519 -15.19209 -14.86785 -14.49219 -14.44217 -14.09222 -14.01953 -13.83223 -13.58310 -13.51914 -13.16693 -13.10621 -12.76044 -12.73847 -12.61600 -12.36930 -12.15253 -11.96516 -11.95599 -11.87304 -11.73353 -11.64945 -11.55710 -11.52291 -11.50348 -11.09637 -10.86733 -10.32213 -10.08767 -9.55507 -8.92613 -8.86059 -6.27137 1.20784 1.51842 1.56247 1.60492 1.80637 2.18707 2.35118 2.78717 3.02169 3.12769 3.19688 3.40851 3.64853 3.74002 3.76274 3.84876 3.86541 4.03082 4.06118 4.14347 4.17141 4.22882 4.29565 4.30586 4.38128 4.40757 4.43484 4.55215 4.56012 4.66504 4.71108 4.77491 4.82916 4.83847 4.91604 4.96620 5.07034 5.07769 5.14475 5.19722 5.20279 5.25691 5.39122 5.56710 5.64006 5.73895 5.93776 6.14734 6.49103 7.06209 7.21560 8.50837 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012913 B = 0.002402 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.881739 B =11654.068733 C =13051.638264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.081 3.919 3 H 0.088 0.912 4 F -0.233 7.233 5 C -0.129 4.129 6 C 0.041 3.959 7 N -0.514 5.514 8 C 0.039 3.961 9 C -0.087 4.087 10 H 0.109 0.891 11 C -0.108 4.108 12 C -0.119 4.119 13 C -0.128 4.128 14 C 0.174 3.826 15 N -0.693 5.693 16 C 0.536 3.464 17 O -0.555 6.555 18 C -0.109 4.109 19 S -0.192 6.192 20 C -0.613 4.613 21 H 0.074 0.926 22 C -0.020 4.020 23 N -0.913 5.913 24 Si 1.136 2.864 25 H -0.280 1.280 26 H -0.263 1.263 27 H -0.263 1.263 28 C 0.037 3.963 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.096 0.904 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.054 0.946 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.045 0.955 43 H 0.068 0.932 44 H 0.415 0.585 45 H 0.107 0.893 46 H 0.109 0.891 47 H 0.260 0.740 48 H 0.047 0.953 49 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.810 -16.615 14.681 30.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.044 3.956 3 H 0.106 0.894 4 F -0.214 7.214 5 C -0.167 4.167 6 C -0.087 4.087 7 N -0.237 5.237 8 C -0.089 4.089 9 C -0.106 4.106 10 H 0.127 0.873 11 C -0.146 4.146 12 C -0.156 4.156 13 C -0.167 4.167 14 C 0.087 3.913 15 N -0.346 5.346 16 C 0.322 3.678 17 O -0.433 6.433 18 C -0.261 4.261 19 S 0.035 5.965 20 C -0.761 4.761 21 H 0.092 0.908 22 C -0.223 4.223 23 N -0.549 5.549 24 Si 0.954 3.046 25 H -0.205 1.205 26 H -0.188 1.188 27 H -0.188 1.188 28 C -0.092 4.092 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.099 0.901 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.072 0.928 38 H 0.095 0.905 39 H 0.112 0.888 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.252 0.748 45 H 0.125 0.875 46 H 0.127 0.873 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -19.309 -14.673 14.489 28.250 hybrid contribution -0.617 -1.299 0.885 1.688 sum -19.926 -15.972 15.374 29.808 Atomic orbital electron populations 1.22339 0.92606 1.03972 1.04306 1.21771 0.96136 0.96438 0.81236 0.89389 1.92780 1.90656 1.83769 1.54201 1.22084 0.94114 1.02534 0.98012 1.22286 0.96370 0.99225 0.90811 1.65414 1.12924 1.08842 1.36535 1.23374 1.00754 0.86880 0.97866 1.22769 0.93883 0.93514 1.00434 0.87257 1.22451 0.93771 0.97444 1.00924 1.22507 0.97498 0.93513 1.02089 1.22683 0.96173 0.97130 1.00666 1.21536 0.95849 0.93492 0.80439 1.45663 1.39416 1.39887 1.09643 1.19902 0.79660 0.79080 0.89184 1.90685 1.44292 1.55666 1.52625 1.23225 1.03389 1.02346 0.97118 1.85018 1.49675 1.49201 1.12642 1.24036 1.29142 1.30253 0.92668 0.90784 1.27840 0.91141 0.91643 1.11678 1.70918 1.35408 1.40859 1.07684 0.82726 0.77504 0.77374 0.67033 1.20541 1.18752 1.18792 1.23332 0.88713 0.99072 0.98072 0.91213 0.91226 0.89237 0.88595 0.90095 0.94616 0.91649 0.88052 0.92795 0.90547 0.88784 0.90360 0.91274 0.93595 0.91304 0.74788 0.87514 0.87314 0.92897 0.93513 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 9.65 71.98 0.69 -0.92 16 2 C 0.08 1.07 3.96 30.60 0.12 1.19 16 3 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 4 F -0.23 -4.43 16.76 44.97 0.75 -3.67 16 5 C -0.13 -1.75 5.04 30.59 0.15 -1.59 16 6 C 0.04 0.77 4.73 86.30 0.41 1.18 16 7 N -0.51 -10.53 5.37 -881.87 -4.74 -15.26 16 8 C 0.04 0.57 5.29 86.44 0.46 1.03 16 9 C -0.09 -1.28 3.65 -9.30 -0.03 -1.32 16 10 H 0.11 1.30 7.72 -2.39 -0.02 1.28 16 11 C -0.11 -1.30 6.38 31.62 0.20 -1.09 16 12 C -0.12 -1.98 6.90 31.85 0.22 -1.76 16 13 C -0.13 -3.13 5.64 31.62 0.18 -2.95 16 14 C 0.17 4.01 0.90 5.09 0.00 4.01 16 15 N -0.69 -17.89 5.25 -416.20 -2.18 -20.07 16 16 C 0.54 19.68 6.88 87.66 0.60 20.29 16 17 O -0.55 -24.99 13.38 -3.04 -0.04 -25.03 16 18 C -0.11 -4.38 6.16 71.24 0.44 -3.94 16 19 S -0.19 -10.66 19.60 -56.49 -1.11 -11.76 16 20 C -0.61 -35.67 9.50 67.96 0.65 -35.02 16 21 H 0.07 4.04 7.80 -2.91 -0.02 4.01 16 22 C -0.02 -1.17 5.49 84.86 0.47 -0.70 16 23 N -0.91 -58.55 13.67 21.65 0.30 -58.25 16 24 Si 1.14 49.58 29.92 68.60 2.05 51.64 16 25 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 26 H -0.26 -10.44 7.11 99.48 0.71 -9.74 16 27 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 28 C 0.04 0.98 5.34 86.44 0.46 1.44 16 29 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 0.99 7.25 -2.39 -0.02 0.98 16 34 H 0.04 0.70 7.67 -2.39 -0.02 0.69 16 35 H 0.06 1.36 8.13 -2.39 -0.02 1.34 16 36 H 0.10 1.15 7.75 -2.39 -0.02 1.13 16 37 H 0.05 0.77 6.93 -2.39 -0.02 0.76 16 38 H 0.08 0.86 7.25 -2.39 -0.02 0.84 16 39 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 42 H 0.05 1.47 6.67 -2.39 -0.02 1.45 16 43 H 0.07 1.70 7.25 -2.39 -0.02 1.68 16 44 H 0.41 8.03 8.31 -92.71 -0.77 7.26 16 45 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 46 H 0.11 3.96 8.14 -2.39 -0.02 3.94 16 47 H 0.26 17.34 7.13 -92.71 -0.66 16.68 16 48 H 0.05 1.25 7.11 -2.39 -0.02 1.23 16 49 H 0.05 1.89 6.79 -2.39 -0.02 1.87 16 Total: -1.00 -77.80 395.96 0.34 -77.46 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.28 Total: 25.11 kcal Atomic # 6 Polarization: -25.18 SS G_CDS: 5.02 Total: -20.16 kcal Atomic # 7 Polarization: -86.96 SS G_CDS: -6.62 Total: -93.59 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.04 Total: -25.03 kcal Atomic # 9 Polarization: -4.43 SS G_CDS: 0.75 Total: -3.67 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.64 kcal Atomic # 16 Polarization: -10.66 SS G_CDS: -1.11 Total: -11.76 kcal Total: -77.80 0.34 -77.46 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111600275.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.428 kcal (2) G-P(sol) polarization free energy of solvation -77.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds