Wall clock time and date at job start Wed Apr 1 2020 04:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00132 * 2 1 4 4 H 1.48498 * 109.47433 * 269.99800 * 3 2 1 5 5 H 1.48503 * 109.47184 * 29.99922 * 3 2 1 6 6 H 1.48505 * 109.47456 * 149.99540 * 3 2 1 7 7 C 1.38817 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00024 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00130 * 179.97438 * 7 2 1 10 10 C 1.46506 * 120.00004 * 174.12126 * 9 7 2 11 11 C 1.52995 * 109.47146 * 63.05256 * 10 9 7 12 12 N 1.46497 * 109.47421 * 54.66923 * 11 10 9 13 13 C 1.34774 * 120.00540 * 176.21571 * 12 11 10 14 14 O 1.21625 * 119.99467 * 359.97438 * 13 12 11 15 15 C 1.47316 * 120.00314 * 180.02562 * 13 12 11 16 16 C 1.39002 * 120.90534 * 359.71610 * 15 13 12 17 17 C 1.39715 * 119.29229 * 179.82336 * 16 15 13 18 18 C 1.35258 * 121.07497 * 0.43020 * 17 16 15 19 19 N 1.35714 * 121.57671 * 359.81202 * 18 17 16 20 20 N 1.40211 * 134.08765 * 179.97438 * 19 18 17 21 21 N 1.29013 * 106.95729 * 180.02562 * 20 19 18 22 22 N 1.28591 * 110.79051 * 0.02562 * 21 20 19 23 23 C 1.32041 * 110.21452 * 359.97438 * 22 21 20 24 24 C 1.52995 * 109.46955 * 303.04977 * 10 9 7 25 25 C 1.53004 * 109.47619 * 300.00048 * 24 10 9 26 26 C 1.53000 * 109.46765 * 300.00178 * 25 24 10 27 27 C 1.53001 * 109.47345 * 59.99833 * 26 25 24 28 28 C 1.53001 * 109.46811 * 299.99763 * 27 26 25 29 29 H 0.96995 * 119.99899 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00206 * 353.85292 * 9 7 2 31 31 H 1.08999 * 109.47143 * 174.67156 * 11 10 9 32 32 H 1.09006 * 109.46979 * 294.67291 * 11 10 9 33 33 H 0.97000 * 119.99799 * 356.21395 * 12 11 10 34 34 H 1.08002 * 120.34981 * 0.02562 * 16 15 13 35 35 H 1.08003 * 119.46081 * 180.21239 * 17 16 15 36 36 H 1.08010 * 119.20945 * 179.79107 * 18 17 16 37 37 H 1.09000 * 109.47612 * 60.00233 * 24 10 9 38 38 H 1.09005 * 109.47055 * 179.97438 * 24 10 9 39 39 H 1.09002 * 109.47171 * 180.02562 * 25 24 10 40 40 H 1.09005 * 109.47049 * 59.99823 * 25 24 10 41 41 H 1.08999 * 109.47476 * 299.99676 * 26 25 24 42 42 H 1.08999 * 109.46792 * 179.97438 * 26 25 24 43 43 H 1.08996 * 109.47060 * 179.97438 * 27 26 25 44 44 H 1.08999 * 109.46962 * 59.99528 * 27 26 25 45 45 H 1.08991 * 109.47242 * 299.99954 * 28 27 26 46 46 H 1.09002 * 109.46657 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4642 0.1305 11 6 3.8006 -3.3612 -1.0691 12 7 4.0896 -2.6364 -2.3090 13 6 3.9620 -3.2576 -3.4982 14 8 3.6073 -4.4202 -3.5419 15 6 4.2533 -2.5289 -4.7449 16 6 4.6553 -1.1986 -4.7171 17 6 4.9265 -0.5411 -5.9196 18 6 4.7955 -1.1754 -7.1071 19 7 4.4010 -2.4718 -7.1805 20 7 4.1825 -3.3666 -8.2376 21 7 3.8101 -4.4849 -7.7131 22 7 3.7679 -4.3961 -6.4310 23 6 4.1206 -3.1834 -6.0458 24 6 3.6863 -3.1701 1.4194 25 6 3.9979 -2.2731 2.6191 26 6 5.5004 -1.9882 2.6662 27 6 5.9263 -1.2822 1.3773 28 6 5.6147 -2.1793 0.1777 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3671 -0.0907 31 1 4.4166 -4.2591 -1.0211 32 1 2.7474 -3.6415 -1.0493 33 1 4.3729 -1.7093 -2.2740 34 1 4.7602 -0.6798 -3.7756 35 1 5.2424 0.4916 -5.9010 36 1 5.0098 -0.6371 -8.0186 37 1 2.6159 -3.3732 1.3859 38 1 4.2310 -4.1093 1.5163 39 1 3.6949 -2.7763 3.5374 40 1 3.4529 -1.3341 2.5220 41 1 6.0455 -2.9271 2.7633 42 1 5.7223 -1.3488 3.5206 43 1 6.9966 -1.0788 1.4110 44 1 5.3812 -0.3433 1.2802 45 1 6.1596 -3.1181 0.2748 46 1 5.9176 -1.6761 -0.7406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115554699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:57 Heat of formation + Delta-G solvation = 125.545091 kcal Electronic energy + Delta-G solvation = -30806.304594 eV Core-core repulsion = 26734.391655 eV Total energy + Delta-G solvation = -4071.912939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.48812 -39.94911 -38.96050 -38.23360 -34.69369 -34.16003 -33.40676 -32.19505 -31.55791 -30.69887 -30.41570 -29.20572 -26.22460 -24.98800 -24.48456 -23.57117 -23.24598 -22.27086 -20.89805 -20.42515 -18.95204 -18.39803 -17.87737 -17.73442 -17.56071 -17.01759 -16.06467 -15.50189 -15.12210 -14.90613 -14.60199 -14.40527 -14.02295 -13.92398 -13.67868 -13.51825 -13.28723 -12.99685 -12.70560 -12.64112 -12.54515 -12.33921 -12.31024 -12.03129 -11.75324 -11.52600 -11.31365 -11.09456 -11.08130 -10.92195 -10.69810 -10.47165 -10.38341 -10.13242 -9.99537 -9.78138 -9.73506 -9.45322 -9.00342 -8.92197 -8.59852 -7.41950 -5.86351 -3.24553 -0.24790 0.26800 1.42154 1.98691 2.39481 3.12545 3.20135 3.23897 3.33964 3.36422 3.41205 3.79451 4.07431 4.25521 4.45704 4.60409 4.81572 4.93123 5.03937 5.06181 5.07186 5.21337 5.24479 5.32066 5.36750 5.44311 5.53684 5.60186 5.64965 5.79376 5.84204 5.93233 5.99024 6.03962 6.05426 6.10640 6.26186 6.38169 6.42887 6.51952 6.60859 6.65318 6.80335 6.91185 7.02607 7.72832 7.89173 8.24187 8.31472 8.40040 9.08239 9.79284 9.98166 11.31545 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.003580 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.390980 B = 7818.977733 C = 8687.873859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.010 3.990 3 Si 0.875 3.125 4 H -0.287 1.287 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.238 4.238 8 H 0.092 0.908 9 N -0.736 5.736 10 C 0.197 3.803 11 C 0.117 3.883 12 N -0.692 5.692 13 C 0.554 3.446 14 O -0.510 6.510 15 C -0.087 4.087 16 C -0.023 4.023 17 C -0.139 4.139 18 C 0.121 3.879 19 N -0.308 5.308 20 N -0.112 5.112 21 N -0.012 5.012 22 N -0.288 5.288 23 C 0.273 3.727 24 C -0.114 4.114 25 C -0.110 4.110 26 C -0.115 4.115 27 C -0.117 4.117 28 C -0.118 4.118 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.397 0.603 34 H 0.164 0.836 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.071 0.929 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.911 2.623 -5.677 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.186 4.186 3 Si 0.705 3.295 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.201 1.201 7 C -0.367 4.367 8 H 0.110 0.890 9 N -0.380 5.380 10 C 0.105 3.895 11 C -0.009 4.009 12 N -0.343 5.343 13 C 0.338 3.662 14 O -0.386 6.386 15 C -0.096 4.096 16 C -0.049 4.049 17 C -0.162 4.162 18 C -0.006 4.006 19 N -0.089 5.089 20 N -0.095 5.095 21 N -0.005 5.005 22 N -0.145 5.145 23 C 0.015 3.985 24 C -0.154 4.154 25 C -0.147 4.147 26 C -0.152 4.152 27 C -0.154 4.154 28 C -0.156 4.156 29 H 0.069 0.931 30 H 0.194 0.806 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.233 0.767 34 H 0.181 0.819 35 H 0.192 0.808 36 H 0.200 0.800 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.098 0.902 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 15.069 0.483 -6.779 16.530 hybrid contribution 0.716 2.748 0.345 2.861 sum 15.785 3.231 -6.434 17.349 Atomic orbital electron populations 1.69687 1.05128 1.25716 1.57074 1.24662 0.95044 0.96854 1.02090 0.86727 0.79512 0.85709 0.77536 1.21385 1.21948 1.20075 1.18939 0.80314 0.94566 1.42923 0.89006 1.42820 1.04031 1.02235 1.88879 1.19795 0.90146 0.87456 0.92054 1.21953 1.01770 0.94258 0.82869 1.45575 1.67807 1.15802 1.05162 1.17352 0.79640 0.86683 0.82568 1.90899 1.45319 1.15786 1.86605 1.20486 1.05368 0.93882 0.89901 1.22077 0.90665 0.91765 1.00352 1.21036 1.02940 1.02340 0.89926 1.21743 0.96355 0.80771 1.01754 1.48986 1.41354 1.11300 1.07230 1.82777 1.25747 0.94914 1.06065 1.78038 1.06727 1.13785 1.01905 1.75308 1.22513 1.14067 1.02602 1.23632 0.96765 0.89054 0.89063 1.21758 1.01999 0.96923 0.94695 1.21372 0.94986 1.01472 0.96889 1.21501 0.97265 0.99553 0.96918 1.21493 0.99633 0.99411 0.94886 1.21756 0.96010 0.99954 0.97856 0.93068 0.80632 0.92075 0.90751 0.76662 0.81852 0.80799 0.79970 0.91007 0.93318 0.93325 0.90236 0.92839 0.92958 0.92997 0.91524 0.91563 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.03 13.97 55.49 0.78 -26.25 16 2 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 3 Si 0.87 19.25 27.67 -169.99 -4.70 14.55 16 4 H -0.29 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 6 H -0.27 -5.55 6.61 56.52 0.37 -5.18 16 7 C -0.24 -5.65 9.18 -15.06 -0.14 -5.79 16 8 H 0.09 2.47 7.00 -52.48 -0.37 2.10 16 9 N -0.74 -13.58 3.19 -47.23 -0.15 -13.74 16 10 C 0.20 3.01 0.41 -131.82 -0.05 2.95 16 11 C 0.12 1.88 4.37 -4.05 -0.02 1.86 16 12 N -0.69 -10.19 5.04 -61.42 -0.31 -10.50 16 13 C 0.55 9.07 7.77 -12.57 -0.10 8.97 16 14 O -0.51 -10.46 16.28 5.26 0.09 -10.38 16 15 C -0.09 -1.17 6.06 -102.72 -0.62 -1.79 16 16 C -0.02 -0.19 9.63 -38.75 -0.37 -0.57 16 17 C -0.14 -0.79 9.92 -40.09 -0.40 -1.19 16 18 C 0.12 0.88 11.15 -16.90 -0.19 0.69 16 19 N -0.31 -3.87 3.94 -10.99 -0.04 -3.91 16 20 N -0.11 -1.66 13.99 60.35 0.84 -0.82 16 21 N -0.01 -0.20 13.36 60.35 0.81 0.61 16 22 N -0.29 -5.29 11.75 32.20 0.38 -4.91 16 23 C 0.27 4.21 7.85 -154.52 -1.21 3.00 16 24 C -0.11 -1.77 4.51 -26.73 -0.12 -1.89 16 25 C -0.11 -1.65 5.77 -26.73 -0.15 -1.81 16 26 C -0.11 -1.45 5.92 -26.73 -0.16 -1.60 16 27 C -0.12 -1.44 5.75 -26.73 -0.15 -1.60 16 28 C -0.12 -1.45 4.65 -26.73 -0.12 -1.57 16 29 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 30 H 0.36 6.49 4.58 -40.82 -0.19 6.31 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 32 H 0.07 1.44 7.51 -51.93 -0.39 1.05 16 33 H 0.40 5.00 5.50 -40.82 -0.22 4.78 16 34 H 0.16 1.05 6.49 -52.49 -0.34 0.71 16 35 H 0.17 0.27 8.06 -52.48 -0.42 -0.15 16 36 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 37 H 0.07 1.30 7.23 -51.93 -0.38 0.92 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.44 7.60 -51.93 -0.39 1.05 16 41 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.95 6.93 -51.93 -0.36 0.59 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.06 0.62 7.29 -51.93 -0.38 0.24 16 LS Contribution 370.01 15.07 5.58 5.58 Total: -1.00 -34.16 370.01 -6.64 -40.80 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -5.99 Total: 9.15 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.91 Total: -0.18 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: 2.30 Total: -59.52 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -4.70 Total: 14.55 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.16 -6.64 -40.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115554699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.343 kcal (2) G-P(sol) polarization free energy of solvation -34.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds