Wall clock time and date at job start Wed Apr 1 2020 04:06:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86793 * 120.00132 * 2 1 4 4 H 1.48498 * 109.47433 * 269.99800 * 3 2 1 5 5 H 1.48503 * 109.47184 * 29.99922 * 3 2 1 6 6 H 1.48505 * 109.47456 * 149.99540 * 3 2 1 7 7 C 1.38817 * 120.00062 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00024 * 0.02562 * 7 2 1 9 9 N 1.36932 * 120.00130 * 179.97438 * 7 2 1 10 10 C 1.46506 * 120.00004 * 174.12126 * 9 7 2 11 11 C 1.52995 * 109.47146 * 63.05256 * 10 9 7 12 12 N 1.46497 * 109.47421 * 54.66923 * 11 10 9 13 13 C 1.34774 * 120.00540 * 176.21571 * 12 11 10 14 14 O 1.21625 * 119.99467 * 359.97438 * 13 12 11 15 15 C 1.47316 * 120.00314 * 180.02562 * 13 12 11 16 16 C 1.39002 * 120.90534 * 359.71610 * 15 13 12 17 17 C 1.39715 * 119.29229 * 179.82336 * 16 15 13 18 18 C 1.35258 * 121.07497 * 0.43020 * 17 16 15 19 19 N 1.35714 * 121.57671 * 359.81202 * 18 17 16 20 20 N 1.40211 * 134.08765 * 179.97438 * 19 18 17 21 21 N 1.29013 * 106.95729 * 180.02562 * 20 19 18 22 22 N 1.28591 * 110.79051 * 0.02562 * 21 20 19 23 23 C 1.32041 * 110.21452 * 359.97438 * 22 21 20 24 24 C 1.52995 * 109.46955 * 303.04977 * 10 9 7 25 25 C 1.53004 * 109.47619 * 300.00048 * 24 10 9 26 26 C 1.53000 * 109.46765 * 300.00178 * 25 24 10 27 27 C 1.53001 * 109.47345 * 59.99833 * 26 25 24 28 28 C 1.53001 * 109.46811 * 299.99763 * 27 26 25 29 29 H 0.96995 * 119.99899 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00206 * 353.85292 * 9 7 2 31 31 H 1.08999 * 109.47143 * 174.67156 * 11 10 9 32 32 H 1.09006 * 109.46979 * 294.67291 * 11 10 9 33 33 H 0.97000 * 119.99799 * 356.21395 * 12 11 10 34 34 H 1.08002 * 120.34981 * 0.02562 * 16 15 13 35 35 H 1.08003 * 119.46081 * 180.21239 * 17 16 15 36 36 H 1.08010 * 119.20945 * 179.79107 * 18 17 16 37 37 H 1.09000 * 109.47612 * 60.00233 * 24 10 9 38 38 H 1.09005 * 109.47055 * 179.97438 * 24 10 9 39 39 H 1.09002 * 109.47171 * 180.02562 * 25 24 10 40 40 H 1.09005 * 109.47049 * 59.99823 * 25 24 10 41 41 H 1.08999 * 109.47476 * 299.99676 * 26 25 24 42 42 H 1.08999 * 109.46792 * 179.97438 * 26 25 24 43 43 H 1.08996 * 109.47060 * 179.97438 * 27 26 25 44 44 H 1.08999 * 109.46962 * 59.99528 * 27 26 25 45 45 H 1.08991 * 109.47242 * 299.99954 * 28 27 26 46 46 H 1.09002 * 109.46657 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4000 5 1 1.4476 2.6526 0.7000 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1121 -2.4642 0.1305 11 6 3.8006 -3.3612 -1.0691 12 7 4.0896 -2.6364 -2.3090 13 6 3.9620 -3.2576 -3.4982 14 8 3.6073 -4.4202 -3.5419 15 6 4.2533 -2.5289 -4.7449 16 6 4.6553 -1.1986 -4.7171 17 6 4.9265 -0.5411 -5.9196 18 6 4.7955 -1.1754 -7.1071 19 7 4.4010 -2.4718 -7.1805 20 7 4.1825 -3.3666 -8.2376 21 7 3.8101 -4.4849 -7.7131 22 7 3.7679 -4.3961 -6.4310 23 6 4.1206 -3.1834 -6.0458 24 6 3.6863 -3.1701 1.4194 25 6 3.9979 -2.2731 2.6191 26 6 5.5004 -1.9882 2.6662 27 6 5.9263 -1.2822 1.3773 28 6 5.6147 -2.1793 0.1777 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3671 -0.0907 31 1 4.4166 -4.2591 -1.0211 32 1 2.7474 -3.6415 -1.0493 33 1 4.3729 -1.7093 -2.2740 34 1 4.7602 -0.6798 -3.7756 35 1 5.2424 0.4916 -5.9010 36 1 5.0098 -0.6371 -8.0186 37 1 2.6159 -3.3732 1.3859 38 1 4.2310 -4.1093 1.5163 39 1 3.6949 -2.7763 3.5374 40 1 3.4529 -1.3341 2.5220 41 1 6.0455 -2.9271 2.7633 42 1 5.7223 -1.3488 3.5206 43 1 6.9966 -1.0788 1.4110 44 1 5.3812 -0.3433 1.2802 45 1 6.1596 -3.1181 0.2748 46 1 5.9176 -1.6761 -0.7406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115554699.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:56 Heat of formation + Delta-G solvation = 100.143498 kcal Electronic energy + Delta-G solvation = -30807.406089 eV Core-core repulsion = 26734.391655 eV Total energy + Delta-G solvation = -4073.014435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.50610 -41.17825 -40.07082 -39.29273 -35.97972 -35.26938 -34.93421 -33.22417 -33.00782 -31.81086 -31.55273 -30.63156 -27.31020 -26.02186 -25.38401 -25.36225 -24.33200 -23.41452 -21.96989 -21.65883 -20.01566 -19.71469 -19.61632 -18.66620 -18.59814 -18.05191 -16.89799 -16.66815 -16.42234 -16.25003 -16.06598 -15.72217 -15.19711 -14.95282 -14.91717 -14.72410 -14.27222 -14.18345 -13.95214 -13.90488 -13.69707 -13.60998 -13.30837 -13.25900 -12.89764 -12.75208 -12.64099 -12.55638 -12.32393 -12.17917 -12.03953 -11.84791 -11.63060 -11.32120 -11.28505 -11.18524 -11.08025 -10.72410 -10.69639 -10.07715 -9.68848 -9.20854 -7.86994 -5.22084 -1.07443 -0.61947 0.56293 0.94579 1.43907 1.47276 1.52078 1.59436 2.01792 2.31211 2.47148 2.61015 2.84721 3.39792 3.42589 3.56299 3.59529 3.73772 3.92007 3.96775 4.00478 4.10913 4.19088 4.33477 4.40634 4.48561 4.54700 4.66652 4.73376 4.75588 4.76517 4.81755 4.90769 4.96250 4.98767 5.09230 5.20921 5.27306 5.33948 5.40782 5.46873 5.52137 5.54680 5.65354 5.77388 5.95970 6.34890 6.54778 7.15374 7.20350 7.23212 7.93934 8.17814 9.35157 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012074 B = 0.003580 C = 0.003222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2318.390980 B = 7818.977733 C = 8687.873859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.993 5.993 2 C -0.068 4.068 3 Si 0.947 3.053 4 H -0.265 1.265 5 H -0.318 1.318 6 H -0.240 1.240 7 C -0.200 4.200 8 H 0.044 0.956 9 N -0.727 5.727 10 C 0.197 3.803 11 C 0.124 3.876 12 N -0.682 5.682 13 C 0.552 3.448 14 O -0.568 6.568 15 C -0.133 4.133 16 C 0.016 3.984 17 C -0.114 4.114 18 C 0.121 3.879 19 N -0.304 5.304 20 N -0.119 5.119 21 N -0.039 5.039 22 N -0.345 5.345 23 C 0.254 3.746 24 C -0.115 4.115 25 C -0.108 4.108 26 C -0.111 4.111 27 C -0.115 4.115 28 C -0.112 4.112 29 H 0.251 0.749 30 H 0.370 0.630 31 H 0.071 0.929 32 H 0.026 0.974 33 H 0.410 0.590 34 H 0.195 0.805 35 H 0.238 0.762 36 H 0.231 0.769 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.051 0.949 40 H 0.044 0.956 41 H 0.072 0.928 42 H 0.062 0.938 43 H 0.083 0.917 44 H 0.050 0.950 45 H 0.085 0.915 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.919 6.669 -6.083 22.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.645 5.645 2 C -0.258 4.258 3 Si 0.775 3.225 4 H -0.190 1.190 5 H -0.246 1.246 6 H -0.164 1.164 7 C -0.331 4.331 8 H 0.062 0.938 9 N -0.371 5.371 10 C 0.107 3.893 11 C -0.002 4.002 12 N -0.333 5.333 13 C 0.338 3.662 14 O -0.447 6.447 15 C -0.143 4.143 16 C -0.010 4.010 17 C -0.137 4.137 18 C -0.004 4.004 19 N -0.084 5.084 20 N -0.103 5.103 21 N -0.031 5.031 22 N -0.203 5.203 23 C -0.003 4.003 24 C -0.155 4.155 25 C -0.145 4.145 26 C -0.148 4.148 27 C -0.152 4.152 28 C -0.150 4.150 29 H 0.060 0.940 30 H 0.205 0.795 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.249 0.751 34 H 0.212 0.788 35 H 0.254 0.746 36 H 0.247 0.753 37 H 0.048 0.952 38 H 0.090 0.910 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.069 0.931 45 H 0.103 0.897 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 20.169 4.538 -7.190 21.888 hybrid contribution -0.818 1.542 0.502 1.816 sum 19.351 6.080 -6.688 21.358 Atomic orbital electron populations 1.69934 1.07764 1.26141 1.60634 1.25484 0.95741 1.01232 1.03319 0.85545 0.78915 0.79446 0.78636 1.19030 1.24642 1.16383 1.18690 0.82595 0.92445 1.39390 0.93789 1.42650 1.01951 1.04023 1.88506 1.19969 0.92614 0.85658 0.91047 1.21762 0.99120 0.95294 0.84038 1.45408 1.67386 1.16187 1.04331 1.17860 0.78289 0.86241 0.83797 1.90864 1.47956 1.18421 1.87486 1.20205 1.10653 0.95875 0.87568 1.22661 0.85900 0.89252 1.03175 1.21812 1.00024 1.04271 0.87553 1.22979 0.94063 0.78608 1.04775 1.49130 1.41106 1.12595 1.05618 1.82573 1.25906 0.94952 1.06820 1.77957 1.08087 1.15120 1.01978 1.75142 1.25055 1.16857 1.03251 1.23745 0.97232 0.88827 0.90462 1.21755 0.99710 0.98473 0.95558 1.21322 0.97259 0.99406 0.96546 1.21489 0.94612 1.00875 0.97866 1.21503 1.01352 0.98266 0.94100 1.21759 0.92431 1.01450 0.99351 0.94035 0.79463 0.91066 0.95561 0.75104 0.78829 0.74608 0.75273 0.95245 0.90955 0.92997 0.93718 0.90945 0.91953 0.89811 0.93128 0.89654 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -60.78 13.97 21.65 0.30 -60.47 16 2 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 3 Si 0.95 38.90 27.67 68.60 1.90 40.80 16 4 H -0.26 -9.87 7.11 99.48 0.71 -9.17 16 5 H -0.32 -14.44 7.11 99.48 0.71 -13.73 16 6 H -0.24 -8.36 6.61 99.48 0.66 -7.70 16 7 C -0.20 -9.84 9.18 84.04 0.77 -9.07 16 8 H 0.04 2.57 7.00 -2.91 -0.02 2.55 16 9 N -0.73 -26.05 3.19 -303.34 -0.97 -27.02 16 10 C 0.20 5.81 0.41 3.60 0.00 5.81 16 11 C 0.12 4.07 4.37 86.38 0.38 4.44 16 12 N -0.68 -19.52 5.04 -466.48 -2.35 -21.87 16 13 C 0.55 18.44 7.77 86.63 0.67 19.12 16 14 O -0.57 -24.98 16.28 -4.11 -0.07 -25.05 16 15 C -0.13 -3.42 6.06 -18.63 -0.11 -3.54 16 16 C 0.02 0.19 9.63 22.81 0.22 0.41 16 17 C -0.11 -0.50 9.92 21.94 0.22 -0.28 16 18 C 0.12 1.13 11.15 83.41 0.93 2.06 16 19 N -0.30 -7.13 3.94 -188.68 -0.74 -7.88 16 20 N -0.12 -3.54 13.99 37.02 0.52 -3.02 16 21 N -0.04 -1.41 13.36 37.02 0.49 -0.91 16 22 N -0.34 -13.52 11.75 -52.05 -0.61 -14.13 16 23 C 0.25 7.92 7.85 135.76 1.07 8.98 16 24 C -0.12 -3.62 4.51 30.59 0.14 -3.48 16 25 C -0.11 -3.15 5.77 30.60 0.18 -2.97 16 26 C -0.11 -2.38 5.92 30.59 0.18 -2.20 16 27 C -0.11 -2.26 5.75 30.59 0.18 -2.08 16 28 C -0.11 -2.26 4.65 30.60 0.14 -2.12 16 29 H 0.25 14.87 8.31 -92.71 -0.77 14.09 16 30 H 0.37 12.06 4.58 -92.71 -0.42 11.64 16 31 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.03 1.11 7.51 -2.38 -0.02 1.09 16 33 H 0.41 9.05 5.50 -92.71 -0.51 8.54 16 34 H 0.19 1.17 6.49 -2.91 -0.02 1.15 16 35 H 0.24 -1.69 8.06 -2.91 -0.02 -1.72 16 36 H 0.23 -0.07 8.06 -2.91 -0.02 -0.09 16 37 H 0.03 1.14 7.23 -2.39 -0.02 1.13 16 38 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.04 1.61 7.60 -2.38 -0.02 1.59 16 41 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.05 1.18 6.93 -2.39 -0.02 1.16 16 45 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.08 1.28 7.29 -2.39 -0.02 1.26 16 Total: -1.00 -89.02 370.01 3.95 -85.07 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.06 Total: 22.50 kcal Atomic # 6 Polarization: 6.56 SS G_CDS: 5.42 Total: 11.98 kcal Atomic # 7 Polarization: -131.94 SS G_CDS: -3.36 Total: -135.30 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.07 Total: -25.05 kcal Atomic # 14 Polarization: 38.90 SS G_CDS: 1.90 Total: 40.80 kcal Total: -89.02 3.95 -85.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115554699.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.215 kcal (2) G-P(sol) polarization free energy of solvation -89.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds