Wall clock time and date at job start Wed Apr 1 2020 04:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99643 * 2 1 4 4 H 1.48497 * 109.47364 * 270.00128 * 3 2 1 5 5 H 1.48503 * 109.46922 * 30.00136 * 3 2 1 6 6 H 1.48497 * 109.46974 * 150.00166 * 3 2 1 7 7 C 1.38810 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00088 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99739 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00009 * 173.40188 * 9 7 2 11 11 C 1.52999 * 109.46984 * 301.11341 * 10 9 7 12 12 N 1.46498 * 109.46978 * 305.24659 * 11 10 9 13 13 C 1.34781 * 119.99624 * 175.77208 * 12 11 10 14 14 O 1.21521 * 120.00023 * 0.02562 * 13 12 11 15 15 C 1.48122 * 119.99748 * 180.02562 * 13 12 11 16 16 C 1.39812 * 119.37013 * 180.02562 * 15 13 12 17 17 C 1.36975 * 119.60693 * 179.72041 * 16 15 13 18 18 C 1.39821 * 118.25072 * 359.97438 * 17 16 15 19 19 N 1.34646 * 135.00571 * 180.02562 * 18 17 16 20 20 N 1.28665 * 109.16250 * 179.97438 * 19 18 17 21 21 N 1.28769 * 111.84805 * 359.97438 * 20 19 18 22 22 H 0.96999 * 125.86467 * 180.02562 * 21 20 19 23 23 C 1.37256 * 108.27638 * 0.02562 * 21 20 19 24 24 N 1.31964 * 134.70426 * 180.02562 * 23 21 20 25 25 C 1.52998 * 109.47068 * 61.11569 * 10 9 7 26 26 C 1.53002 * 109.47605 * 59.99714 * 25 10 9 27 27 C 1.53002 * 109.46564 * 60.00164 * 26 25 10 28 28 C 1.52996 * 109.47281 * 299.99905 * 27 26 25 29 29 C 1.52999 * 109.47044 * 60.00197 * 28 27 26 30 30 H 0.97004 * 120.00383 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99690 * 353.39744 * 9 7 2 32 32 H 1.09003 * 109.46656 * 185.24864 * 11 10 9 33 33 H 1.09001 * 109.47186 * 65.24857 * 11 10 9 34 34 H 0.96998 * 120.00581 * 355.77463 * 12 11 10 35 35 H 1.07996 * 120.20392 * 359.69616 * 16 15 13 36 36 H 1.07998 * 120.87718 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47189 * 180.02562 * 25 10 9 38 38 H 1.09010 * 109.47058 * 299.99697 * 25 10 9 39 39 H 1.08998 * 109.47193 * 300.00421 * 26 25 10 40 40 H 1.08996 * 109.46966 * 179.97438 * 26 25 10 41 41 H 1.09002 * 109.46655 * 180.02562 * 27 26 25 42 42 H 1.08998 * 109.47156 * 60.00234 * 27 26 25 43 43 H 1.08998 * 109.47295 * 300.00244 * 28 27 26 44 44 H 1.08996 * 109.47316 * 180.02562 * 28 27 26 45 45 H 1.09003 * 109.47324 * 179.97438 * 29 28 27 46 46 H 1.09003 * 109.47108 * 60.00368 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4624 0.1452 11 6 3.7211 -3.1304 1.4650 12 7 3.9377 -2.1929 2.5697 13 6 3.5805 -2.5348 3.8235 14 8 3.0792 -3.6209 4.0377 15 6 3.7990 -1.5868 4.9404 16 6 3.4240 -1.9552 6.2359 17 6 3.6290 -1.0845 7.2732 18 6 4.2134 0.1542 6.9919 19 7 4.5597 1.2314 7.7217 20 7 5.0745 2.1194 6.9459 21 7 5.1074 1.7243 5.7208 22 1 5.4531 2.2311 4.9693 23 6 4.5695 0.4630 5.6606 24 7 4.3527 -0.4086 4.6938 25 6 3.7642 -3.3916 -1.0194 26 6 4.1552 -2.7237 -2.3393 27 6 5.6592 -2.4428 -2.3427 28 6 6.0072 -1.5136 -1.1781 29 6 5.6161 -2.1816 0.1416 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3675 -0.0959 32 1 4.3332 -4.0194 1.6175 33 1 2.6694 -3.4148 1.4307 34 1 4.3381 -1.3261 2.3989 35 1 2.9749 -2.9204 6.4178 36 1 3.3476 -1.3481 8.2820 37 1 4.3089 -4.3296 -0.9112 38 1 2.6926 -3.5918 -1.0169 39 1 3.6102 -1.7859 -2.4473 40 1 3.9077 -3.3859 -3.1689 41 1 5.9376 -1.9666 -3.2828 42 1 6.2041 -3.3806 -2.2347 43 1 5.4622 -0.5758 -1.2862 44 1 7.0785 -1.3132 -1.1808 45 1 5.8645 -1.5197 0.9714 46 1 6.1612 -3.1193 0.2497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115565752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:38 Heat of formation + Delta-G solvation = 97.978876 kcal Electronic energy + Delta-G solvation = -30844.172494 eV Core-core repulsion = 26771.064194 eV Total energy + Delta-G solvation = -4073.108300 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.60654 -40.20501 -39.14041 -38.04145 -34.75989 -34.44789 -33.39297 -32.10052 -31.48563 -30.98678 -30.41166 -29.21254 -26.46644 -25.00820 -23.92451 -23.50779 -22.96243 -22.31356 -21.02432 -20.32119 -19.14896 -18.69537 -18.38580 -17.81499 -17.76523 -16.83139 -15.86149 -15.39380 -15.13539 -14.94502 -14.65001 -14.43233 -14.07456 -13.73385 -13.67008 -13.55523 -13.26044 -13.04025 -12.68611 -12.62537 -12.24524 -12.21497 -12.05391 -12.03819 -11.91258 -11.74097 -11.28045 -11.03645 -10.89451 -10.68432 -10.42829 -10.33231 -10.06686 -9.95161 -9.71310 -9.63549 -9.49423 -9.40214 -9.30815 -8.96335 -8.57057 -7.35391 -5.82107 -3.18974 -0.09521 0.74504 1.86621 1.89439 2.75652 3.24559 3.26876 3.29389 3.37532 3.52156 3.66161 4.00972 4.14368 4.51418 4.53906 4.70636 4.97107 5.07478 5.08616 5.12831 5.22323 5.26740 5.48458 5.50654 5.56437 5.64380 5.64908 5.79180 5.85938 5.94683 6.00058 6.02400 6.05100 6.11841 6.27248 6.32383 6.38238 6.43206 6.53159 6.63422 6.66248 6.82924 6.90760 7.00472 7.16103 7.82916 7.87602 7.93665 8.36023 8.43023 9.13409 9.85319 10.04246 11.35882 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.003876 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.310302 B = 7222.493025 C = 7931.309714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.010 3.990 3 Si 0.875 3.125 4 H -0.286 1.286 5 H -0.295 1.295 6 H -0.277 1.277 7 C -0.235 4.235 8 H 0.092 0.908 9 N -0.735 5.735 10 C 0.197 3.803 11 C 0.114 3.886 12 N -0.673 5.673 13 C 0.565 3.435 14 O -0.534 6.534 15 C 0.161 3.839 16 C -0.121 4.121 17 C -0.004 4.004 18 C -0.027 4.027 19 N -0.240 5.240 20 N 0.006 4.994 21 N -0.402 5.402 22 H 0.459 0.541 23 C 0.218 3.782 24 N -0.443 5.443 25 C -0.116 4.116 26 C -0.110 4.110 27 C -0.114 4.114 28 C -0.116 4.116 29 C -0.119 4.119 30 H 0.258 0.742 31 H 0.361 0.639 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.409 0.591 35 H 0.168 0.832 36 H 0.159 0.841 37 H 0.049 0.951 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.052 0.948 42 H 0.053 0.947 43 H 0.064 0.936 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.677 -2.879 7.135 15.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.186 4.186 3 Si 0.706 3.294 4 H -0.212 1.212 5 H -0.222 1.222 6 H -0.203 1.203 7 C -0.364 4.364 8 H 0.110 0.890 9 N -0.378 5.378 10 C 0.106 3.894 11 C -0.012 4.012 12 N -0.322 5.322 13 C 0.347 3.653 14 O -0.411 6.411 15 C 0.006 3.994 16 C -0.145 4.145 17 C -0.035 4.035 18 C -0.155 4.155 19 N -0.117 5.117 20 N 0.023 4.977 21 N -0.134 5.134 22 H 0.307 0.693 23 C -0.026 4.026 24 N -0.159 5.159 25 C -0.156 4.156 26 C -0.148 4.148 27 C -0.152 4.152 28 C -0.153 4.153 29 C -0.157 4.157 30 H 0.068 0.932 31 H 0.195 0.805 32 H 0.076 0.924 33 H 0.097 0.903 34 H 0.246 0.754 35 H 0.185 0.815 36 H 0.177 0.823 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.076 0.924 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.644 -2.314 7.449 15.716 hybrid contribution 0.377 1.319 -0.598 1.497 sum 14.021 -0.995 6.852 15.637 Atomic orbital electron populations 1.69686 1.05059 1.25624 1.57363 1.24634 0.95040 0.96812 1.02118 0.86706 0.79290 0.85769 0.77660 1.21244 1.22156 1.20315 1.18917 0.80354 0.94486 1.42686 0.89026 1.42805 1.03995 1.02430 1.88616 1.19789 0.90043 0.87999 0.91588 1.21971 1.02324 0.90749 0.86151 1.45617 1.59993 1.20704 1.05903 1.17587 0.79564 0.85568 0.82542 1.90787 1.44389 1.22083 1.83851 1.21438 0.93910 0.89459 0.94543 1.21772 0.99632 1.01987 0.91081 1.20505 0.93434 0.88515 1.01029 1.20662 1.05705 0.97450 0.91662 1.75377 1.13590 0.98713 1.24033 1.78081 1.12552 1.20207 0.86860 1.44678 1.46945 1.11885 1.09891 0.69260 1.19814 1.01449 0.89225 0.92137 1.66332 1.13911 1.01536 1.34138 1.21805 1.01846 0.96946 0.94994 1.21377 0.94947 1.01873 0.96563 1.21502 0.97290 0.98859 0.97552 1.21473 0.99666 0.99387 0.94802 1.21769 0.95954 1.00628 0.97387 0.93159 0.80530 0.92417 0.90311 0.75381 0.81478 0.82323 0.93280 0.91144 0.90326 0.93290 0.92903 0.92796 0.91710 0.92931 0.92414 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.05 13.97 55.49 0.78 -27.27 16 2 C 0.01 0.27 5.50 -17.43 -0.10 0.17 16 3 Si 0.87 20.86 27.67 -169.99 -4.70 16.16 16 4 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 6 H -0.28 -6.06 6.62 56.52 0.37 -5.68 16 7 C -0.23 -5.88 9.20 -15.06 -0.14 -6.02 16 8 H 0.09 2.53 6.99 -52.49 -0.37 2.16 16 9 N -0.74 -14.74 3.36 -47.23 -0.16 -14.90 16 10 C 0.20 3.21 0.40 -131.82 -0.05 3.16 16 11 C 0.11 1.91 4.30 -4.04 -0.02 1.90 16 12 N -0.67 -11.31 5.12 -61.16 -0.31 -11.62 16 13 C 0.56 9.56 7.81 -12.20 -0.10 9.46 16 14 O -0.53 -10.04 16.29 5.35 0.09 -9.95 16 15 C 0.16 2.37 6.74 -82.94 -0.56 1.82 16 16 C -0.12 -1.43 9.55 -39.45 -0.38 -1.81 16 17 C 0.00 -0.04 10.17 -39.45 -0.40 -0.44 16 18 C -0.03 -0.36 7.38 -84.91 -0.63 -0.98 16 19 N -0.24 -3.23 12.43 32.12 0.40 -2.83 16 20 N 0.01 0.08 13.28 60.35 0.80 0.88 16 21 N -0.40 -4.53 7.06 31.13 0.22 -4.31 16 22 H 0.46 3.63 8.96 -190.26 -1.71 1.93 16 23 C 0.22 2.95 8.56 -156.27 -1.34 1.62 16 24 N -0.44 -6.51 9.54 -8.90 -0.08 -6.59 16 25 C -0.12 -1.82 4.58 -26.73 -0.12 -1.95 16 26 C -0.11 -1.66 5.77 -26.73 -0.15 -1.81 16 27 C -0.11 -1.46 5.92 -26.73 -0.16 -1.62 16 28 C -0.12 -1.51 5.75 -26.73 -0.15 -1.67 16 29 C -0.12 -1.61 4.66 -26.73 -0.12 -1.73 16 30 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 31 H 0.36 7.30 4.43 -40.82 -0.18 7.12 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.56 7.54 -51.93 -0.39 1.17 16 34 H 0.41 6.82 6.58 -40.82 -0.27 6.55 16 35 H 0.17 1.71 7.61 -52.49 -0.40 1.31 16 36 H 0.16 1.13 8.06 -52.49 -0.42 0.71 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.07 1.27 7.21 -51.92 -0.37 0.90 16 39 H 0.08 1.42 7.60 -51.93 -0.39 1.02 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.96 6.84 -51.93 -0.36 0.60 16 44 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.06 0.77 7.11 -51.93 -0.37 0.40 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -31.73 370.07 -9.17 -40.89 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: -7.35 Total: 13.88 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -4.41 Total: 0.09 kcal Atomic # 7 Polarization: -68.29 SS G_CDS: 1.64 Total: -66.65 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.95 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.70 Total: 16.16 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.73 -9.17 -40.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115565752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.872 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.894 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds