Wall clock time and date at job start Wed Apr 1 2020 04:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86801 * 119.99643 * 2 1 4 4 H 1.48497 * 109.47364 * 270.00128 * 3 2 1 5 5 H 1.48503 * 109.46922 * 30.00136 * 3 2 1 6 6 H 1.48497 * 109.46974 * 150.00166 * 3 2 1 7 7 C 1.38810 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00088 * 359.97438 * 7 2 1 9 9 N 1.36937 * 119.99739 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00009 * 173.40188 * 9 7 2 11 11 C 1.52999 * 109.46984 * 301.11341 * 10 9 7 12 12 N 1.46498 * 109.46978 * 305.24659 * 11 10 9 13 13 C 1.34781 * 119.99624 * 175.77208 * 12 11 10 14 14 O 1.21521 * 120.00023 * 0.02562 * 13 12 11 15 15 C 1.48122 * 119.99748 * 180.02562 * 13 12 11 16 16 C 1.39812 * 119.37013 * 180.02562 * 15 13 12 17 17 C 1.36975 * 119.60693 * 179.72041 * 16 15 13 18 18 C 1.39821 * 118.25072 * 359.97438 * 17 16 15 19 19 N 1.34646 * 135.00571 * 180.02562 * 18 17 16 20 20 N 1.28665 * 109.16250 * 179.97438 * 19 18 17 21 21 N 1.28769 * 111.84805 * 359.97438 * 20 19 18 22 22 H 0.96999 * 125.86467 * 180.02562 * 21 20 19 23 23 C 1.37256 * 108.27638 * 0.02562 * 21 20 19 24 24 N 1.31964 * 134.70426 * 180.02562 * 23 21 20 25 25 C 1.52998 * 109.47068 * 61.11569 * 10 9 7 26 26 C 1.53002 * 109.47605 * 59.99714 * 25 10 9 27 27 C 1.53002 * 109.46564 * 60.00164 * 26 25 10 28 28 C 1.52996 * 109.47281 * 299.99905 * 27 26 25 29 29 C 1.52999 * 109.47044 * 60.00197 * 28 27 26 30 30 H 0.97004 * 120.00383 * 0.02562 * 1 2 3 31 31 H 0.96999 * 119.99690 * 353.39744 * 9 7 2 32 32 H 1.09003 * 109.46656 * 185.24864 * 11 10 9 33 33 H 1.09001 * 109.47186 * 65.24857 * 11 10 9 34 34 H 0.96998 * 120.00581 * 355.77463 * 12 11 10 35 35 H 1.07996 * 120.20392 * 359.69616 * 16 15 13 36 36 H 1.07998 * 120.87718 * 180.02562 * 17 16 15 37 37 H 1.08998 * 109.47189 * 180.02562 * 25 10 9 38 38 H 1.09010 * 109.47058 * 299.99697 * 25 10 9 39 39 H 1.08998 * 109.47193 * 300.00421 * 26 25 10 40 40 H 1.08996 * 109.46966 * 179.97438 * 26 25 10 41 41 H 1.09002 * 109.46655 * 180.02562 * 27 26 25 42 42 H 1.08998 * 109.47156 * 60.00234 * 27 26 25 43 43 H 1.08998 * 109.47295 * 300.00244 * 28 27 26 44 44 H 1.08996 * 109.47316 * 180.02562 * 28 27 26 45 45 H 1.09003 * 109.47324 * 179.97438 * 29 28 27 46 46 H 1.09003 * 109.47108 * 60.00368 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6527 0.7001 6 1 3.5477 1.4403 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4624 0.1452 11 6 3.7211 -3.1304 1.4650 12 7 3.9377 -2.1929 2.5697 13 6 3.5805 -2.5348 3.8235 14 8 3.0792 -3.6209 4.0377 15 6 3.7990 -1.5868 4.9404 16 6 3.4240 -1.9552 6.2359 17 6 3.6290 -1.0845 7.2732 18 6 4.2134 0.1542 6.9919 19 7 4.5597 1.2314 7.7217 20 7 5.0745 2.1194 6.9459 21 7 5.1074 1.7243 5.7208 22 1 5.4531 2.2311 4.9693 23 6 4.5695 0.4630 5.6606 24 7 4.3527 -0.4086 4.6938 25 6 3.7642 -3.3916 -1.0194 26 6 4.1552 -2.7237 -2.3393 27 6 5.6592 -2.4428 -2.3427 28 6 6.0072 -1.5136 -1.1781 29 6 5.6161 -2.1816 0.1416 30 1 -0.4851 0.8400 -0.0004 31 1 3.8646 -0.3675 -0.0959 32 1 4.3332 -4.0194 1.6175 33 1 2.6694 -3.4148 1.4307 34 1 4.3381 -1.3261 2.3989 35 1 2.9749 -2.9204 6.4178 36 1 3.3476 -1.3481 8.2820 37 1 4.3089 -4.3296 -0.9112 38 1 2.6926 -3.5918 -1.0169 39 1 3.6102 -1.7859 -2.4473 40 1 3.9077 -3.3859 -3.1689 41 1 5.9376 -1.9666 -3.2828 42 1 6.2041 -3.3806 -2.2347 43 1 5.4622 -0.5758 -1.2862 44 1 7.0785 -1.3132 -1.1808 45 1 5.8645 -1.5197 0.9714 46 1 6.1612 -3.1193 0.2497 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115565752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:37 Heat of formation + Delta-G solvation = 75.242107 kcal Electronic energy + Delta-G solvation = -30845.158434 eV Core-core repulsion = 26771.064194 eV Total energy + Delta-G solvation = -4074.094240 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.57459 -41.42873 -40.37276 -39.26383 -36.03640 -35.50146 -35.09820 -33.28921 -32.87322 -32.18424 -31.59015 -30.76666 -27.63286 -26.12158 -25.39720 -24.94328 -23.94096 -23.51471 -22.18844 -21.61318 -20.17237 -19.81867 -19.74153 -19.57619 -19.00064 -17.81135 -17.07560 -16.67498 -16.46207 -16.34110 -16.13936 -15.87105 -15.26883 -14.94387 -14.93708 -14.61626 -14.47254 -14.31147 -14.19738 -13.89164 -13.61502 -13.55240 -13.33580 -13.01820 -12.94573 -12.88836 -12.85530 -12.65589 -12.35407 -12.13787 -11.94088 -11.69909 -11.58373 -11.25617 -11.19973 -10.87781 -10.73175 -10.70370 -10.47991 -10.30497 -9.94816 -9.24395 -7.95077 -5.26983 -1.11078 -0.20760 0.84907 0.95846 1.33027 1.36799 1.43907 1.61076 2.05775 2.50525 2.53380 2.54554 3.01066 3.17598 3.36296 3.52526 3.56775 3.68890 3.86642 3.95435 4.06155 4.19419 4.22228 4.36522 4.43934 4.62426 4.67158 4.70038 4.72522 4.75623 4.78101 4.88912 4.95020 5.05356 5.13895 5.17105 5.22961 5.37473 5.42492 5.46057 5.49519 5.52642 5.63009 5.74081 5.89249 6.11410 6.28572 6.54444 6.87549 7.09928 7.15884 7.90477 8.09502 9.26808 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010782 B = 0.003876 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2596.310302 B = 7222.493025 C = 7931.309714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.065 4.065 3 Si 0.938 3.062 4 H -0.285 1.285 5 H -0.313 1.313 6 H -0.243 1.243 7 C -0.191 4.191 8 H 0.055 0.945 9 N -0.731 5.731 10 C 0.193 3.807 11 C 0.119 3.881 12 N -0.675 5.675 13 C 0.562 3.438 14 O -0.559 6.559 15 C 0.142 3.858 16 C -0.118 4.118 17 C 0.014 3.986 18 C -0.035 4.035 19 N -0.255 5.255 20 N 0.009 4.991 21 N -0.387 5.387 22 H 0.472 0.528 23 C 0.202 3.798 24 N -0.456 5.456 25 C -0.114 4.114 26 C -0.109 4.109 27 C -0.108 4.108 28 C -0.116 4.116 29 C -0.113 4.113 30 H 0.250 0.750 31 H 0.365 0.635 32 H 0.082 0.918 33 H 0.038 0.962 34 H 0.411 0.589 35 H 0.183 0.817 36 H 0.198 0.802 37 H 0.079 0.921 38 H 0.033 0.967 39 H 0.041 0.959 40 H 0.058 0.942 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.044 0.956 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.202 -2.964 7.980 19.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.640 5.640 2 C -0.255 4.255 3 Si 0.767 3.233 4 H -0.211 1.211 5 H -0.241 1.241 6 H -0.167 1.167 7 C -0.323 4.323 8 H 0.073 0.927 9 N -0.374 5.374 10 C 0.103 3.897 11 C -0.007 4.007 12 N -0.324 5.324 13 C 0.346 3.654 14 O -0.438 6.438 15 C -0.012 4.012 16 C -0.142 4.142 17 C -0.017 4.017 18 C -0.162 4.162 19 N -0.131 5.131 20 N 0.025 4.975 21 N -0.122 5.122 22 H 0.323 0.677 23 C -0.043 4.043 24 N -0.173 5.173 25 C -0.154 4.154 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.153 4.153 29 C -0.151 4.151 30 H 0.059 0.941 31 H 0.199 0.801 32 H 0.100 0.900 33 H 0.056 0.944 34 H 0.248 0.752 35 H 0.200 0.800 36 H 0.215 0.785 37 H 0.098 0.902 38 H 0.052 0.948 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 17.258 -2.417 8.279 19.293 hybrid contribution -0.703 1.230 -0.854 1.655 sum 16.555 -1.187 7.425 18.183 Atomic orbital electron populations 1.69885 1.07178 1.25823 1.61096 1.25328 0.95709 1.00509 1.03973 0.85655 0.79117 0.80856 0.77667 1.21136 1.24098 1.16680 1.18752 0.82490 0.92625 1.38396 0.92663 1.42748 1.02131 1.04312 1.88252 1.20061 0.92096 0.86242 0.91276 1.21877 1.00326 0.91871 0.86614 1.45634 1.60065 1.20690 1.05989 1.17951 0.78778 0.85690 0.83017 1.90762 1.45425 1.23281 1.84336 1.21234 0.95666 0.89522 0.94780 1.21923 0.99310 1.02828 0.90110 1.20913 0.91360 0.86988 1.02394 1.21029 1.05677 0.98110 0.91406 1.75376 1.14356 0.99016 1.24392 1.78033 1.12183 1.20062 0.87191 1.44714 1.46112 1.11299 1.10028 0.67684 1.19965 1.02202 0.89800 0.92330 1.66191 1.14457 1.01779 1.34842 1.21779 1.00032 0.98321 0.95280 1.21339 0.96887 1.00094 0.96345 1.21473 0.94965 1.00057 0.98092 1.21492 1.01144 0.98345 0.94337 1.21751 0.92969 1.02253 0.98099 0.94101 0.80120 0.90040 0.94360 0.75189 0.80006 0.78465 0.90215 0.94775 0.94011 0.92358 0.91862 0.90486 0.93757 0.90077 0.91884 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -62.71 13.97 21.65 0.30 -62.41 16 2 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 3 Si 0.94 43.89 27.67 68.60 1.90 45.79 16 4 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 5 H -0.31 -15.55 7.11 99.48 0.71 -14.84 16 6 H -0.24 -9.80 6.62 99.48 0.66 -9.15 16 7 C -0.19 -9.94 9.20 84.03 0.77 -9.17 16 8 H 0.06 3.27 6.99 -2.91 -0.02 3.24 16 9 N -0.73 -29.25 3.36 -303.35 -1.02 -30.27 16 10 C 0.19 6.08 0.40 3.60 0.00 6.09 16 11 C 0.12 3.97 4.30 86.38 0.37 4.34 16 12 N -0.68 -22.36 5.12 -465.70 -2.39 -24.74 16 13 C 0.56 18.90 7.81 86.87 0.68 19.58 16 14 O -0.56 -21.12 16.29 -3.78 -0.06 -21.19 16 15 C 0.14 4.04 6.74 42.05 0.28 4.33 16 16 C -0.12 -2.59 9.55 22.35 0.21 -2.37 16 17 C 0.01 0.26 10.17 22.36 0.23 0.48 16 18 C -0.03 -0.83 7.38 39.83 0.29 -0.54 16 19 N -0.25 -6.35 12.43 -52.29 -0.65 -7.00 16 20 N 0.01 0.20 13.28 37.02 0.49 0.69 16 21 N -0.39 -8.01 7.06 -55.41 -0.39 -8.40 16 22 H 0.47 6.56 8.96 -219.84 -1.97 4.59 16 23 C 0.20 5.14 8.56 134.30 1.15 6.29 16 24 N -0.46 -12.85 9.54 -182.09 -1.74 -14.59 16 25 C -0.11 -3.52 4.58 30.59 0.14 -3.38 16 26 C -0.11 -3.16 5.77 30.60 0.18 -2.98 16 27 C -0.11 -2.39 5.92 30.59 0.18 -2.20 16 28 C -0.12 -2.59 5.75 30.59 0.18 -2.41 16 29 C -0.11 -2.65 4.66 30.59 0.14 -2.51 16 30 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 31 H 0.36 14.27 4.43 -92.71 -0.41 13.86 16 32 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 33 H 0.04 1.59 7.54 -2.39 -0.02 1.57 16 34 H 0.41 13.24 6.58 -92.71 -0.61 12.63 16 35 H 0.18 3.39 7.61 -2.91 -0.02 3.37 16 36 H 0.20 2.04 8.06 -2.91 -0.02 2.02 16 37 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.03 1.28 7.21 -2.38 -0.02 1.26 16 39 H 0.04 1.51 7.60 -2.39 -0.02 1.49 16 40 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 43 H 0.04 1.18 6.84 -2.39 -0.02 1.17 16 44 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 1.45 7.11 -2.39 -0.02 1.44 16 46 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 Total: -1.00 -73.07 370.07 -0.26 -73.32 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -1.98 Total: 36.46 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 5.27 Total: 12.33 kcal Atomic # 7 Polarization: -141.33 SS G_CDS: -5.39 Total: -146.72 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.19 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.90 Total: 45.79 kcal Total: -73.07 -0.26 -73.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115565752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.565 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds