Wall clock time and date at job start Wed Apr 1 2020 04:13:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86792 * 119.99975 * 2 1 4 4 H 1.48497 * 109.47648 * 269.99687 * 3 2 1 5 5 H 1.48501 * 109.47201 * 30.00361 * 3 2 1 6 6 H 1.48499 * 109.47322 * 149.99908 * 3 2 1 7 7 C 1.38813 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00481 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99712 * 179.97438 * 7 2 1 10 10 C 1.46503 * 120.00278 * 173.80366 * 9 7 2 11 11 C 1.52997 * 109.46945 * 63.15523 * 10 9 7 12 12 N 1.46501 * 109.47114 * 54.66890 * 11 10 9 13 13 C 1.34779 * 120.00191 * 176.26401 * 12 11 10 14 14 O 1.21577 * 119.99839 * 359.97438 * 13 12 11 15 15 C 1.47717 * 120.00072 * 179.97438 * 13 12 11 16 16 C 1.40114 * 120.35284 * 359.97438 * 15 13 12 17 17 N 1.31254 * 121.14841 * 179.97438 * 16 15 13 18 18 C 1.32716 * 121.80399 * 359.97438 * 17 16 15 19 19 N 1.37120 * 133.40635 * 179.97438 * 18 17 16 20 20 H 0.97000 * 126.58909 * 359.97438 * 19 18 17 21 21 N 1.40193 * 106.81698 * 180.02562 * 19 18 17 22 22 N 1.28663 * 109.51553 * 0.02562 * 21 19 18 23 23 C 1.35333 * 109.99358 * 359.97438 * 22 21 19 24 24 C 1.39438 * 120.35028 * 179.97438 * 15 13 12 25 25 C 1.52996 * 109.47519 * 183.15624 * 10 9 7 26 26 C 1.53002 * 109.47260 * 59.99692 * 25 10 9 27 27 C 1.53005 * 109.46764 * 60.00277 * 26 25 10 28 28 C 1.53010 * 109.47047 * 299.99962 * 27 26 25 29 29 C 1.52996 * 109.46831 * 60.00291 * 28 27 26 30 30 H 0.96999 * 119.99971 * 0.02562 * 1 2 3 31 31 H 0.97006 * 120.00185 * 353.80487 * 9 7 2 32 32 H 1.08997 * 109.47141 * 294.66699 * 11 10 9 33 33 H 1.08997 * 109.47401 * 174.66779 * 11 10 9 34 34 H 0.96995 * 120.00319 * 356.25964 * 12 11 10 35 35 H 1.08001 * 119.42441 * 359.95419 * 16 15 13 36 36 H 1.08003 * 120.94831 * 0.04469 * 24 15 13 37 37 H 1.09002 * 109.47380 * 180.02562 * 25 10 9 38 38 H 1.09006 * 109.46863 * 300.00196 * 25 10 9 39 39 H 1.09002 * 109.47196 * 300.00446 * 26 25 10 40 40 H 1.08998 * 109.47459 * 179.97438 * 26 25 10 41 41 H 1.08998 * 109.47048 * 180.02562 * 27 26 25 42 42 H 1.08994 * 109.47226 * 59.99815 * 27 26 25 43 43 H 1.08999 * 109.46559 * 300.00058 * 28 27 26 44 44 H 1.08999 * 109.46703 * 180.02562 * 28 27 26 45 45 H 1.08998 * 109.46983 * 180.02562 * 29 28 27 46 46 H 1.08994 * 109.47573 * 60.00066 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4477 2.6526 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4703 -2.1375 0.0005 9 7 3.3796 -1.2022 0.0000 10 6 4.1122 -2.4634 0.1375 11 6 3.8026 -3.3660 -1.0585 12 7 4.0935 -2.6468 -2.3012 13 6 3.9669 -3.2733 -3.4878 14 8 3.6117 -4.4354 -3.5268 15 6 4.2596 -2.5479 -4.7409 16 6 4.6689 -1.2084 -4.7046 17 7 4.9335 -0.5491 -5.8083 18 6 4.8274 -1.1155 -7.0038 19 7 5.0374 -0.6652 -8.2818 20 1 5.3240 0.2244 -8.5416 21 7 4.7570 -1.7370 -9.1408 22 7 4.4032 -2.7619 -8.4480 23 6 4.4224 -2.4580 -7.1293 24 6 4.1315 -3.1891 -5.9725 25 6 5.6145 -2.1780 0.1856 26 6 5.9241 -1.2754 1.3816 27 6 5.4964 -1.9754 2.6731 28 6 3.9939 -2.2609 2.6250 29 6 3.6845 -3.1635 1.4290 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3671 -0.0914 32 1 2.7495 -3.6465 -1.0389 33 1 4.4187 -4.2636 -1.0054 34 1 4.3771 -1.7198 -2.2701 35 1 4.7680 -0.7095 -3.7518 36 1 3.8173 -4.2207 -6.0316 37 1 6.1596 -3.1164 0.2875 38 1 5.9192 -1.6792 -0.7345 39 1 5.3791 -0.3370 1.2793 40 1 6.9945 -1.0724 1.4162 41 1 5.7165 -1.3322 3.5251 42 1 6.0414 -2.9138 2.7754 43 1 3.4490 -1.3225 2.5227 44 1 3.6892 -2.7592 3.5452 45 1 2.6141 -3.3665 1.3944 46 1 4.2294 -4.1019 1.5313 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115574829.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:43 Heat of formation + Delta-G solvation = 94.759850 kcal Electronic energy + Delta-G solvation = -30492.872368 eV Core-core repulsion = 26419.624480 eV Total energy + Delta-G solvation = -4073.247887 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.64312 -40.08771 -39.02214 -38.06273 -34.73003 -34.25011 -33.45877 -31.97530 -31.63918 -30.77024 -30.39876 -29.18942 -26.09798 -24.95221 -24.04612 -23.54531 -22.96209 -22.27075 -20.94456 -20.43048 -18.96702 -18.79089 -18.21038 -17.84567 -17.16457 -16.67253 -16.39739 -15.41381 -15.12632 -14.93864 -14.51915 -14.40242 -14.14281 -13.76925 -13.59731 -13.49587 -13.42426 -13.21410 -12.83588 -12.67572 -12.32574 -12.29222 -12.23683 -12.01522 -11.77756 -11.71494 -11.32394 -11.05003 -10.90316 -10.67776 -10.35036 -10.30508 -10.10615 -9.92290 -9.71894 -9.65881 -9.62785 -9.43663 -9.33291 -8.97347 -8.64639 -7.39311 -5.84321 -3.22368 -0.08456 0.39702 1.69492 1.77246 2.74175 3.16871 3.26979 3.28600 3.38516 3.55923 3.62704 3.96227 3.99543 4.37224 4.45313 4.49414 4.84258 4.94918 5.03945 5.07531 5.10030 5.27118 5.41694 5.46524 5.55150 5.59715 5.65077 5.80921 5.84332 5.86263 5.95360 6.00597 6.05527 6.12243 6.27846 6.34516 6.38715 6.43385 6.54247 6.61928 6.66211 6.80413 6.91933 7.04064 7.17677 7.45146 7.73706 7.91058 8.33243 8.37564 9.10525 9.82041 10.00670 11.33458 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012175 B = 0.003346 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2299.242076 B = 8366.204153 C = 9279.804166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.011 3.989 3 Si 0.873 3.127 4 H -0.285 1.285 5 H -0.293 1.293 6 H -0.275 1.275 7 C -0.238 4.238 8 H 0.092 0.908 9 N -0.737 5.737 10 C 0.196 3.804 11 C 0.116 3.884 12 N -0.693 5.693 13 C 0.564 3.436 14 O -0.541 6.541 15 C -0.197 4.197 16 C 0.217 3.783 17 N -0.488 5.488 18 C 0.293 3.707 19 N -0.484 5.484 20 H 0.453 0.547 21 N 0.015 4.985 22 N -0.191 5.191 23 C -0.075 4.075 24 C 0.081 3.919 25 C -0.118 4.118 26 C -0.117 4.117 27 C -0.115 4.115 28 C -0.110 4.110 29 C -0.114 4.114 30 H 0.259 0.741 31 H 0.361 0.639 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.398 0.602 35 H 0.180 0.820 36 H 0.167 0.833 37 H 0.065 0.935 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.071 0.929 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.464 -2.263 -6.434 15.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.185 4.185 3 Si 0.704 3.296 4 H -0.212 1.212 5 H -0.220 1.220 6 H -0.200 1.200 7 C -0.368 4.368 8 H 0.110 0.890 9 N -0.380 5.380 10 C 0.105 3.895 11 C -0.010 4.010 12 N -0.342 5.342 13 C 0.349 3.651 14 O -0.419 6.419 15 C -0.206 4.206 16 C 0.044 3.956 17 N -0.202 5.202 18 C 0.048 3.952 19 N -0.210 5.210 20 H 0.302 0.698 21 N 0.032 4.968 22 N -0.073 5.073 23 C -0.200 4.200 24 C 0.050 3.950 25 C -0.156 4.156 26 C -0.155 4.155 27 C -0.152 4.152 28 C -0.147 4.147 29 C -0.154 4.154 30 H 0.069 0.931 31 H 0.194 0.806 32 H 0.092 0.908 33 H 0.079 0.921 34 H 0.235 0.765 35 H 0.196 0.804 36 H 0.184 0.816 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.066 0.934 45 H 0.090 0.910 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 14.144 -2.783 -7.921 16.448 hybrid contribution 0.493 2.067 0.723 2.245 sum 14.637 -0.716 -7.198 16.327 Atomic orbital electron populations 1.69688 1.05130 1.25736 1.57053 1.24652 0.95045 0.96873 1.01972 0.86746 0.79498 0.85668 0.77721 1.21217 1.21960 1.20049 1.18917 0.80310 0.94516 1.43068 0.89019 1.42837 1.04047 1.02343 1.88773 1.19795 0.90169 0.87482 0.92056 1.21946 1.01667 0.94318 0.83031 1.45645 1.67277 1.15860 1.05464 1.17603 0.78358 0.86292 0.82867 1.90786 1.47568 1.16494 1.87081 1.20897 1.08456 0.96217 0.95031 1.23155 0.87055 0.89747 0.95640 1.66705 1.20215 1.37943 0.95378 1.19607 0.96776 0.91124 0.87711 1.47506 1.56054 1.15305 1.02106 0.69845 1.81711 1.12835 0.88762 1.13541 1.74879 1.11214 1.18938 1.02226 1.20396 1.12170 0.94611 0.92868 1.21080 0.86458 1.00338 0.87136 1.21759 0.95991 0.99910 0.97954 1.21498 0.99670 0.99438 0.94866 1.21501 0.97241 0.99547 0.96927 1.21372 0.95010 1.01475 0.96887 1.21760 1.01951 0.96903 0.94757 0.93082 0.80568 0.90789 0.92125 0.76526 0.80357 0.81575 0.91588 0.92465 0.91492 0.92980 0.92972 0.92860 0.90233 0.93353 0.91022 0.93357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.21 13.97 55.49 0.78 -26.44 16 2 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 3 Si 0.87 19.85 27.67 -169.99 -4.70 15.15 16 4 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.27 -5.74 6.61 56.52 0.37 -5.36 16 7 C -0.24 -5.70 9.18 -15.06 -0.14 -5.84 16 8 H 0.09 2.45 7.01 -52.49 -0.37 2.08 16 9 N -0.74 -13.80 3.19 -47.23 -0.15 -13.95 16 10 C 0.20 3.00 0.41 -131.82 -0.05 2.94 16 11 C 0.12 1.81 4.37 -4.04 -0.02 1.79 16 12 N -0.69 -9.97 5.04 -61.29 -0.31 -10.27 16 13 C 0.56 8.47 7.77 -12.39 -0.10 8.37 16 14 O -0.54 -9.75 16.39 5.30 0.09 -9.66 16 15 C -0.20 -2.51 5.88 -104.87 -0.62 -3.12 16 16 C 0.22 2.51 10.69 -17.09 -0.18 2.33 16 17 N -0.49 -5.95 10.37 -12.03 -0.12 -6.07 16 18 C 0.29 3.55 8.49 -155.93 -1.32 2.22 16 19 N -0.48 -4.79 7.53 31.15 0.23 -4.55 16 20 H 0.45 2.84 8.96 -182.53 -1.64 1.21 16 21 N 0.01 0.17 13.82 60.35 0.83 1.00 16 22 N -0.19 -2.50 12.40 32.17 0.40 -2.10 16 23 C -0.08 -0.96 7.27 -84.74 -0.62 -1.58 16 24 C 0.08 1.01 9.75 -38.51 -0.38 0.63 16 25 C -0.12 -1.47 4.65 -26.73 -0.12 -1.60 16 26 C -0.12 -1.49 5.75 -26.73 -0.15 -1.64 16 27 C -0.11 -1.46 5.92 -26.72 -0.16 -1.62 16 28 C -0.11 -1.66 5.77 -26.73 -0.15 -1.82 16 29 C -0.11 -1.76 4.51 -26.73 -0.12 -1.88 16 30 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 31 H 0.36 6.71 4.57 -40.82 -0.19 6.52 16 32 H 0.07 1.38 7.51 -51.93 -0.39 0.99 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.40 5.16 5.43 -40.82 -0.22 4.94 16 35 H 0.18 1.69 6.39 -52.49 -0.34 1.35 16 36 H 0.17 1.93 7.71 -52.48 -0.40 1.52 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.65 7.29 -51.93 -0.38 0.27 16 39 H 0.07 0.98 6.93 -51.93 -0.36 0.62 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 1.46 7.60 -51.93 -0.39 1.06 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.07 1.28 7.23 -51.93 -0.38 0.91 16 46 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -30.93 369.07 -8.80 -39.73 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -7.17 Total: 12.23 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -4.23 Total: -0.62 kcal Atomic # 7 Polarization: -64.04 SS G_CDS: 1.66 Total: -62.39 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.66 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -4.70 Total: 15.15 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.93 -8.80 -39.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115574829.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.485 kcal (2) G-P(sol) polarization free energy of solvation -30.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds