Wall clock time and date at job start Wed Apr 1 2020 04:20:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48499 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47011 * 300.00094 * 3 2 1 6 6 H 1.48503 * 109.47384 * 59.99455 * 3 2 1 7 7 C 1.38811 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99461 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99918 * 174.57236 * 9 7 2 11 11 C 1.53000 * 109.47071 * 62.78146 * 10 9 7 12 12 N 1.46493 * 109.47582 * 54.62824 * 11 10 9 13 13 C 1.34771 * 120.00397 * 176.55219 * 12 11 10 14 14 O 1.21547 * 119.99898 * 0.02562 * 13 12 11 15 15 C 1.47868 * 120.00376 * 180.02562 * 13 12 11 16 16 C 1.39448 * 121.11691 * 359.97438 * 15 13 12 17 17 C 1.38624 * 119.37960 * 179.97438 * 16 15 13 18 18 N 1.31583 * 121.63275 * 359.97438 * 17 16 15 19 19 C 1.32209 * 121.86843 * 0.02562 * 18 17 16 20 20 N 1.37209 * 134.67260 * 179.97438 * 19 18 17 21 21 H 0.97006 * 125.87222 * 359.97438 * 20 19 18 22 22 N 1.28778 * 108.25984 * 180.02562 * 20 19 18 23 23 N 1.28689 * 111.76241 * 0.02562 * 22 20 19 24 24 C 1.34396 * 109.14919 * 359.72941 * 23 22 20 25 25 C 1.52997 * 109.47266 * 302.77543 * 10 9 7 26 26 C 1.53004 * 109.47214 * 299.99911 * 25 10 9 27 27 C 1.52992 * 109.47082 * 300.00224 * 26 25 10 28 28 C 1.53003 * 109.47421 * 60.00086 * 27 26 25 29 29 C 1.52997 * 109.46764 * 299.99555 * 28 27 26 30 30 H 0.97005 * 119.99594 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00101 * 354.30137 * 9 7 2 32 32 H 1.08997 * 109.47117 * 174.64002 * 11 10 9 33 33 H 1.09008 * 109.46733 * 294.62965 * 11 10 9 34 34 H 0.97003 * 119.99730 * 356.55487 * 12 11 10 35 35 H 1.08000 * 120.31251 * 359.97438 * 16 15 13 36 36 H 1.07994 * 119.18311 * 180.02562 * 17 16 15 37 37 H 1.09004 * 109.46990 * 60.00094 * 25 10 9 38 38 H 1.09002 * 109.47002 * 180.02562 * 25 10 9 39 39 H 1.08998 * 109.47107 * 179.97438 * 26 25 10 40 40 H 1.09002 * 109.47044 * 60.00139 * 26 25 10 41 41 H 1.09003 * 109.47189 * 299.99325 * 27 26 25 42 42 H 1.09003 * 109.47013 * 179.97438 * 27 26 25 43 43 H 1.08998 * 109.46888 * 180.02562 * 28 27 26 44 44 H 1.08994 * 109.47375 * 60.00041 * 28 27 26 45 45 H 1.09002 * 109.47495 * 300.00045 * 29 28 27 46 46 H 1.08998 * 109.46949 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3966 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0533 -3.6539 -0.1189 11 6 2.9813 -3.8243 1.0855 12 7 2.2044 -3.7036 2.3216 13 6 2.8032 -3.8888 3.5147 14 8 3.9879 -4.1556 3.5652 15 6 2.0189 -3.7675 4.7624 16 6 0.6587 -3.4618 4.7317 17 6 -0.0419 -3.3574 5.9233 18 7 0.5445 -3.5401 7.0870 19 6 1.8304 -3.8320 7.1824 20 7 2.6908 -4.0703 8.2243 21 1 2.4595 -4.0595 9.1663 22 7 3.8584 -4.3096 7.7367 23 7 3.8595 -4.2525 6.4511 24 6 2.6195 -3.9623 6.0217 25 6 2.8825 -3.6462 -1.4047 26 6 1.9544 -3.4759 -2.6091 27 6 0.9570 -4.6352 -2.6523 28 6 0.1277 -4.6429 -1.3666 29 6 1.0558 -4.8134 -0.1622 30 1 -0.4850 0.8401 -0.0004 31 1 0.3592 -2.3901 0.0836 32 1 3.4511 -4.8071 1.0460 33 1 3.7509 -3.0526 1.0632 34 1 1.2590 -3.4903 2.2814 35 1 0.1557 -3.3079 3.7885 36 1 -1.0953 -3.1209 5.8958 37 1 3.5930 -2.8202 -1.3738 38 1 3.4235 -4.5883 -1.4937 39 1 2.5452 -3.4699 -3.5251 40 1 1.4130 -2.5340 -2.5203 41 1 1.4984 -5.5771 -2.7413 42 1 0.2955 -4.5136 -3.5101 43 1 -0.5825 -5.4692 -1.3973 44 1 -0.4137 -3.7011 -1.2777 45 1 1.5972 -5.7552 -0.2511 46 1 0.4650 -4.8193 0.7537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001115624394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:17 Heat of formation + Delta-G solvation = 97.111464 kcal Electronic energy + Delta-G solvation = -30726.296500 eV Core-core repulsion = 26653.150587 eV Total energy + Delta-G solvation = -4073.145914 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.52829 -39.94894 -39.02025 -38.20571 -34.56998 -34.27882 -33.39667 -32.19948 -31.05965 -30.88213 -30.26700 -28.61628 -26.24495 -24.92407 -24.01004 -23.83105 -23.04612 -22.14282 -20.97287 -20.33627 -18.97727 -18.65953 -18.25115 -17.46971 -17.14668 -16.73996 -15.83075 -15.46151 -15.14999 -14.83957 -14.71888 -14.33783 -14.03437 -13.74581 -13.60413 -13.45957 -13.28903 -12.90909 -12.78159 -12.45581 -12.20433 -11.91722 -11.78994 -11.74647 -11.63717 -11.53205 -11.15655 -10.92182 -10.80352 -10.57511 -10.20670 -10.17175 -10.06429 -9.83726 -9.67143 -9.48523 -9.43888 -9.35012 -9.22440 -8.93093 -8.52478 -7.06374 -5.85794 -3.14543 -0.06641 0.72180 1.97315 2.07482 2.90500 3.26390 3.38373 3.46962 3.47986 3.63371 3.68904 4.09999 4.29923 4.48193 4.53732 4.66230 5.04764 5.15730 5.22520 5.25028 5.31575 5.39219 5.52701 5.56164 5.61947 5.69875 5.79148 5.94799 6.00382 6.02255 6.08813 6.13287 6.16300 6.26418 6.41318 6.42052 6.46435 6.56303 6.72764 6.76873 6.78398 6.92540 7.00483 7.17824 7.29873 7.68693 7.87327 8.02778 8.32404 8.50664 9.45647 9.97107 10.33941 11.36011 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.003583 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.975553 B = 7812.868533 C = 8873.229020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.006 4.006 3 Si 0.897 3.103 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.294 1.294 7 C -0.230 4.230 8 H 0.070 0.930 9 N -0.710 5.710 10 C 0.191 3.809 11 C 0.114 3.886 12 N -0.688 5.688 13 C 0.544 3.456 14 O -0.516 6.516 15 C -0.001 4.001 16 C -0.138 4.138 17 C 0.165 3.835 18 N -0.464 5.464 19 C 0.212 3.788 20 N -0.409 5.409 21 H 0.456 0.544 22 N -0.005 5.005 23 N -0.206 5.206 24 C 0.001 3.999 25 C -0.114 4.114 26 C -0.109 4.109 27 C -0.113 4.113 28 C -0.115 4.115 29 C -0.114 4.114 30 H 0.253 0.747 31 H 0.384 0.616 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.402 0.598 35 H 0.162 0.838 36 H 0.184 0.816 37 H 0.064 0.936 38 H 0.045 0.955 39 H 0.043 0.957 40 H 0.083 0.917 41 H 0.049 0.951 42 H 0.051 0.949 43 H 0.048 0.952 44 H 0.075 0.925 45 H 0.059 0.941 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.294 -10.609 7.998 13.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.203 4.203 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.220 1.220 6 H -0.221 1.221 7 C -0.361 4.361 8 H 0.088 0.912 9 N -0.352 5.352 10 C 0.099 3.901 11 C -0.011 4.011 12 N -0.340 5.340 13 C 0.328 3.672 14 O -0.392 6.392 15 C -0.017 4.017 16 C -0.162 4.162 17 C -0.007 4.007 18 N -0.179 5.179 19 C -0.031 4.031 20 N -0.139 5.139 21 H 0.304 0.696 22 N 0.012 4.988 23 N -0.083 5.083 24 C -0.128 4.128 25 C -0.154 4.154 26 C -0.147 4.147 27 C -0.150 4.150 28 C -0.153 4.153 29 C -0.152 4.152 30 H 0.063 0.937 31 H 0.219 0.781 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.239 0.761 35 H 0.180 0.820 36 H 0.200 0.800 37 H 0.083 0.917 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.067 0.933 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.207 -10.943 9.045 14.248 hybrid contribution -1.050 1.478 -0.239 1.828 sum -2.256 -9.466 8.805 13.123 Atomic orbital electron populations 1.69649 1.04905 1.25466 1.57853 1.24640 0.95370 0.97332 1.02910 0.86265 0.79096 0.84655 0.77087 1.20613 1.21976 1.22093 1.19124 0.91039 0.83721 1.42198 0.91211 1.42459 1.06067 0.99412 1.87266 1.19828 0.91279 0.87566 0.91469 1.21968 0.95043 1.00435 0.83692 1.45666 1.14041 1.69240 1.05013 1.17828 0.87107 0.79274 0.83020 1.90838 1.14484 1.47071 1.86781 1.19830 0.93406 0.96711 0.91768 1.22530 0.93018 0.99060 1.01580 1.22872 1.00423 0.92273 0.85140 1.66326 1.07309 1.13977 1.30244 1.19870 0.91485 1.04256 0.87486 1.44654 1.05729 1.53390 1.10111 0.69635 1.78236 1.02274 1.12284 1.05991 1.75566 1.17795 1.15248 0.99657 1.20134 0.92118 1.06355 0.94155 1.21784 0.98073 1.00203 0.95365 1.21371 0.97180 0.99737 0.96412 1.21472 0.97907 0.98446 0.97204 1.21471 0.97491 1.01858 0.94453 1.21699 0.97649 0.97802 0.98044 0.93664 0.78057 0.92444 0.91393 0.76054 0.82005 0.79960 0.91687 0.93666 0.93775 0.89802 0.93234 0.93043 0.93286 0.90674 0.92186 0.92507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.94 13.07 55.49 0.73 -24.21 16 2 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 3 Si 0.90 21.33 29.55 -169.99 -5.02 16.30 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 7 C -0.23 -5.49 8.70 -15.06 -0.13 -5.62 16 8 H 0.07 1.72 6.77 -52.49 -0.36 1.37 16 9 N -0.71 -14.25 3.40 -47.23 -0.16 -14.41 16 10 C 0.19 3.14 0.41 -131.82 -0.05 3.09 16 11 C 0.11 1.96 4.37 -4.05 -0.02 1.94 16 12 N -0.69 -11.10 5.05 -61.25 -0.31 -11.41 16 13 C 0.54 9.54 7.79 -12.32 -0.10 9.45 16 14 O -0.52 -10.90 16.27 5.32 0.09 -10.81 16 15 C 0.00 -0.01 5.92 -104.51 -0.62 -0.63 16 16 C -0.14 -1.54 9.61 -38.99 -0.37 -1.92 16 17 C 0.16 1.59 11.14 -17.52 -0.20 1.40 16 18 N -0.46 -5.38 10.35 -12.39 -0.13 -5.51 16 19 C 0.21 2.78 8.56 -156.21 -1.34 1.44 16 20 N -0.41 -4.45 7.06 31.11 0.22 -4.23 16 21 H 0.46 2.89 8.96 -190.25 -1.71 1.18 16 22 N 0.00 -0.07 13.29 60.35 0.80 0.73 16 23 N -0.21 -3.56 11.92 32.24 0.38 -3.17 16 24 C 0.00 0.02 6.97 -84.72 -0.59 -0.57 16 25 C -0.11 -1.87 4.52 -26.73 -0.12 -1.99 16 26 C -0.11 -1.76 5.77 -26.73 -0.15 -1.91 16 27 C -0.11 -1.56 5.92 -26.73 -0.16 -1.72 16 28 C -0.12 -1.60 5.75 -26.73 -0.15 -1.76 16 29 C -0.11 -1.58 4.65 -26.73 -0.12 -1.71 16 30 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 31 H 0.38 8.22 6.64 -40.82 -0.27 7.95 16 32 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.34 7.51 -51.92 -0.39 0.95 16 34 H 0.40 5.92 5.54 -40.82 -0.23 5.69 16 35 H 0.16 1.49 6.53 -52.49 -0.34 1.15 16 36 H 0.18 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.06 1.18 7.23 -51.93 -0.38 0.81 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.08 1.64 7.60 -51.93 -0.39 1.24 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.22 6.92 -51.93 -0.36 0.86 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.74 7.28 -51.93 -0.38 0.36 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -31.66 371.21 -9.35 -41.01 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: -7.32 Total: 10.88 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: -4.22 Total: -0.78 kcal Atomic # 7 Polarization: -63.73 SS G_CDS: 1.53 Total: -62.20 kcal Atomic # 8 Polarization: -10.90 SS G_CDS: 0.09 Total: -10.81 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.66 -9.35 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115624394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.122 kcal (2) G-P(sol) polarization free energy of solvation -31.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds