Wall clock time and date at job start Wed Apr 1 2020 04:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48499 * 109.47109 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47011 * 300.00094 * 3 2 1 6 6 H 1.48503 * 109.47384 * 59.99455 * 3 2 1 7 7 C 1.38811 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99461 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00261 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99918 * 174.57236 * 9 7 2 11 11 C 1.53000 * 109.47071 * 62.78146 * 10 9 7 12 12 N 1.46493 * 109.47582 * 54.62824 * 11 10 9 13 13 C 1.34771 * 120.00397 * 176.55219 * 12 11 10 14 14 O 1.21547 * 119.99898 * 0.02562 * 13 12 11 15 15 C 1.47868 * 120.00376 * 180.02562 * 13 12 11 16 16 C 1.39448 * 121.11691 * 359.97438 * 15 13 12 17 17 C 1.38624 * 119.37960 * 179.97438 * 16 15 13 18 18 N 1.31583 * 121.63275 * 359.97438 * 17 16 15 19 19 C 1.32209 * 121.86843 * 0.02562 * 18 17 16 20 20 N 1.37209 * 134.67260 * 179.97438 * 19 18 17 21 21 H 0.97006 * 125.87222 * 359.97438 * 20 19 18 22 22 N 1.28778 * 108.25984 * 180.02562 * 20 19 18 23 23 N 1.28689 * 111.76241 * 0.02562 * 22 20 19 24 24 C 1.34396 * 109.14919 * 359.72941 * 23 22 20 25 25 C 1.52997 * 109.47266 * 302.77543 * 10 9 7 26 26 C 1.53004 * 109.47214 * 299.99911 * 25 10 9 27 27 C 1.52992 * 109.47082 * 300.00224 * 26 25 10 28 28 C 1.53003 * 109.47421 * 60.00086 * 27 26 25 29 29 C 1.52997 * 109.46764 * 299.99555 * 28 27 26 30 30 H 0.97005 * 119.99594 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00101 * 354.30137 * 9 7 2 32 32 H 1.08997 * 109.47117 * 174.64002 * 11 10 9 33 33 H 1.09008 * 109.46733 * 294.62965 * 11 10 9 34 34 H 0.97003 * 119.99730 * 356.55487 * 12 11 10 35 35 H 1.08000 * 120.31251 * 359.97438 * 16 15 13 36 36 H 1.07994 * 119.18311 * 180.02562 * 17 16 15 37 37 H 1.09004 * 109.46990 * 60.00094 * 25 10 9 38 38 H 1.09002 * 109.47002 * 180.02562 * 25 10 9 39 39 H 1.08998 * 109.47107 * 179.97438 * 26 25 10 40 40 H 1.09002 * 109.47044 * 60.00139 * 26 25 10 41 41 H 1.09003 * 109.47189 * 299.99325 * 27 26 25 42 42 H 1.09003 * 109.47013 * 179.97438 * 27 26 25 43 43 H 1.08998 * 109.46888 * 180.02562 * 28 27 26 44 44 H 1.08994 * 109.47375 * 60.00041 * 28 27 26 45 45 H 1.09002 * 109.47495 * 300.00045 * 29 28 27 46 46 H 1.08998 * 109.46949 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8915 2.3966 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0533 -3.6539 -0.1189 11 6 2.9813 -3.8243 1.0855 12 7 2.2044 -3.7036 2.3216 13 6 2.8032 -3.8888 3.5147 14 8 3.9879 -4.1556 3.5652 15 6 2.0189 -3.7675 4.7624 16 6 0.6587 -3.4618 4.7317 17 6 -0.0419 -3.3574 5.9233 18 7 0.5445 -3.5401 7.0870 19 6 1.8304 -3.8320 7.1824 20 7 2.6908 -4.0703 8.2243 21 1 2.4595 -4.0595 9.1663 22 7 3.8584 -4.3096 7.7367 23 7 3.8595 -4.2525 6.4511 24 6 2.6195 -3.9623 6.0217 25 6 2.8825 -3.6462 -1.4047 26 6 1.9544 -3.4759 -2.6091 27 6 0.9570 -4.6352 -2.6523 28 6 0.1277 -4.6429 -1.3666 29 6 1.0558 -4.8134 -0.1622 30 1 -0.4850 0.8401 -0.0004 31 1 0.3592 -2.3901 0.0836 32 1 3.4511 -4.8071 1.0460 33 1 3.7509 -3.0526 1.0632 34 1 1.2590 -3.4903 2.2814 35 1 0.1557 -3.3079 3.7885 36 1 -1.0953 -3.1209 5.8958 37 1 3.5930 -2.8202 -1.3738 38 1 3.4235 -4.5883 -1.4937 39 1 2.5452 -3.4699 -3.5251 40 1 1.4130 -2.5340 -2.5203 41 1 1.4984 -5.5771 -2.7413 42 1 0.2955 -4.5136 -3.5101 43 1 -0.5825 -5.4692 -1.3973 44 1 -0.4137 -3.7011 -1.2777 45 1 1.5972 -5.7552 -0.2511 46 1 0.4650 -4.8193 0.7537 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115624394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:20:16 Heat of formation + Delta-G solvation = 74.741918 kcal Electronic energy + Delta-G solvation = -30727.266517 eV Core-core repulsion = 26653.150587 eV Total energy + Delta-G solvation = -4074.115930 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.54303 -41.20953 -40.17796 -39.45135 -35.92849 -35.34114 -35.08447 -33.39895 -32.46297 -31.89939 -31.50272 -30.21277 -27.42586 -26.07686 -25.65160 -24.97926 -24.15863 -23.37926 -22.12751 -21.64419 -20.14921 -19.71676 -19.58997 -18.95254 -18.52409 -17.76395 -17.05778 -16.74031 -16.51073 -16.16592 -15.91921 -15.69941 -15.53534 -15.22585 -14.88712 -14.67485 -14.36123 -14.24712 -13.91781 -13.57070 -13.51971 -13.36371 -13.20647 -12.87096 -12.82351 -12.81324 -12.68181 -12.55983 -12.46039 -11.99993 -11.83315 -11.63740 -11.44105 -11.27023 -11.03242 -10.76010 -10.66546 -10.59098 -10.41383 -10.28247 -9.90133 -8.86220 -7.84404 -5.07373 -1.08783 -0.21667 0.97505 1.10006 1.44631 1.50797 1.54733 1.76103 2.04270 2.55163 2.61064 2.70119 3.13812 3.32420 3.45154 3.49895 3.72764 3.86211 3.96167 4.05667 4.13084 4.19026 4.33291 4.35573 4.45040 4.53456 4.71157 4.72939 4.79963 4.81645 4.86647 4.95729 5.01105 5.11866 5.17391 5.23523 5.28130 5.44147 5.53472 5.56665 5.59481 5.64901 5.66883 5.72114 5.86041 6.39078 6.39527 6.56505 6.98788 7.19029 7.49618 8.20410 8.48868 9.37630 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010939 B = 0.003583 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.975553 B = 7812.868533 C = 8873.229020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C -0.054 4.054 3 Si 0.936 3.064 4 H -0.283 1.283 5 H -0.299 1.299 6 H -0.301 1.301 7 C -0.205 4.205 8 H 0.058 0.942 9 N -0.706 5.706 10 C 0.191 3.809 11 C 0.120 3.880 12 N -0.680 5.680 13 C 0.543 3.457 14 O -0.562 6.562 15 C -0.035 4.035 16 C -0.113 4.113 17 C 0.179 3.821 18 N -0.459 5.459 19 C 0.209 3.791 20 N -0.381 5.381 21 H 0.475 0.525 22 N -0.009 5.009 23 N -0.259 5.259 24 C -0.025 4.025 25 C -0.115 4.115 26 C -0.106 4.106 27 C -0.109 4.109 28 C -0.111 4.111 29 C -0.109 4.109 30 H 0.247 0.753 31 H 0.381 0.619 32 H 0.069 0.931 33 H 0.034 0.966 34 H 0.411 0.589 35 H 0.184 0.816 36 H 0.234 0.766 37 H 0.037 0.963 38 H 0.070 0.930 39 H 0.053 0.947 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.081 0.919 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.458 -12.246 8.496 15.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.604 5.604 2 C -0.247 4.247 3 Si 0.769 3.231 4 H -0.209 1.209 5 H -0.227 1.227 6 H -0.229 1.229 7 C -0.337 4.337 8 H 0.076 0.924 9 N -0.348 5.348 10 C 0.101 3.899 11 C -0.006 4.006 12 N -0.331 5.331 13 C 0.328 3.672 14 O -0.441 6.441 15 C -0.051 4.051 16 C -0.137 4.137 17 C 0.006 3.994 18 N -0.173 5.173 19 C -0.035 4.035 20 N -0.115 5.115 21 H 0.327 0.673 22 N 0.008 4.992 23 N -0.134 5.134 24 C -0.155 4.155 25 C -0.154 4.154 26 C -0.143 4.143 27 C -0.146 4.146 28 C -0.149 4.149 29 C -0.146 4.146 30 H 0.056 0.944 31 H 0.215 0.785 32 H 0.087 0.913 33 H 0.052 0.948 34 H 0.249 0.751 35 H 0.202 0.798 36 H 0.250 0.750 37 H 0.056 0.944 38 H 0.089 0.911 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.077 0.923 43 H 0.094 0.906 44 H 0.066 0.934 45 H 0.099 0.901 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -3.350 -12.608 9.570 16.179 hybrid contribution -0.400 1.944 -0.379 2.020 sum -3.750 -10.664 9.191 14.569 Atomic orbital electron populations 1.69718 1.05368 1.25088 1.60223 1.25002 0.95888 0.98956 1.04902 0.85633 0.78195 0.82966 0.76293 1.20858 1.22675 1.22864 1.19175 0.90594 0.85029 1.38920 0.92379 1.42445 1.05829 0.99682 1.86794 1.20001 0.91748 0.87121 0.91079 1.21840 0.94569 0.99849 0.84317 1.45572 1.14213 1.68820 1.04498 1.18258 0.86800 0.78099 0.84003 1.90803 1.16553 1.49263 1.87497 1.19731 0.94855 1.00225 0.90300 1.22888 0.91284 0.96100 1.03388 1.23749 1.02143 0.89804 0.83717 1.66522 1.06132 1.13651 1.31039 1.19957 0.91902 1.04608 0.87012 1.44649 1.04675 1.51270 1.10879 0.67293 1.78126 1.03316 1.12428 1.05323 1.75505 1.19404 1.17654 1.00841 1.20422 0.92274 1.07350 0.95457 1.21780 0.97782 1.00437 0.95441 1.21296 0.97437 0.98990 0.96624 1.21458 0.97508 0.98104 0.97563 1.21432 0.97683 1.01501 0.94282 1.21685 0.97131 0.96979 0.98851 0.94416 0.78484 0.91327 0.94795 0.75089 0.79845 0.74969 0.94432 0.91115 0.92788 0.93836 0.91020 0.92336 0.90607 0.93374 0.90079 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -51.43 13.07 21.65 0.28 -51.15 16 2 C -0.05 -2.82 5.50 84.86 0.47 -2.35 16 3 Si 0.94 44.60 29.55 68.60 2.03 46.63 16 4 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 5 H -0.30 -14.43 7.11 99.48 0.71 -13.73 16 6 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 7 C -0.20 -9.91 8.70 84.03 0.73 -9.17 16 8 H 0.06 2.94 6.77 -2.91 -0.02 2.92 16 9 N -0.71 -28.20 3.40 -303.34 -1.03 -29.23 16 10 C 0.19 6.11 0.41 3.61 0.00 6.11 16 11 C 0.12 4.09 4.37 86.38 0.38 4.47 16 12 N -0.68 -21.56 5.05 -465.97 -2.35 -23.91 16 13 C 0.54 19.27 7.79 86.79 0.68 19.94 16 14 O -0.56 -24.71 16.27 -3.86 -0.06 -24.77 16 15 C -0.04 -1.03 5.92 -19.79 -0.12 -1.15 16 16 C -0.11 -2.21 9.61 22.65 0.22 -2.00 16 17 C 0.18 2.71 11.14 84.82 0.95 3.66 16 18 N -0.46 -9.21 10.35 -193.10 -2.00 -11.21 16 19 C 0.21 5.14 8.56 134.17 1.15 6.29 16 20 N -0.38 -7.88 7.06 -55.48 -0.39 -8.27 16 21 H 0.47 5.21 8.96 -219.83 -1.97 3.24 16 22 N -0.01 -0.26 13.29 37.02 0.49 0.23 16 23 N -0.26 -9.19 11.92 -51.93 -0.62 -9.81 16 24 C -0.03 -0.80 6.97 40.06 0.28 -0.52 16 25 C -0.11 -3.66 4.52 30.59 0.14 -3.52 16 26 C -0.11 -3.29 5.77 30.59 0.18 -3.11 16 27 C -0.11 -2.71 5.92 30.59 0.18 -2.53 16 28 C -0.11 -2.77 5.75 30.59 0.18 -2.60 16 29 C -0.11 -2.70 4.65 30.60 0.14 -2.55 16 30 H 0.25 13.30 8.31 -92.70 -0.77 12.53 16 31 H 0.38 16.07 6.64 -92.70 -0.62 15.45 16 32 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.03 1.38 7.51 -2.38 -0.02 1.36 16 34 H 0.41 11.44 5.54 -92.71 -0.51 10.93 16 35 H 0.18 2.73 6.53 -2.91 -0.02 2.71 16 36 H 0.23 1.17 8.06 -2.91 -0.02 1.15 16 37 H 0.04 1.38 7.23 -2.39 -0.02 1.37 16 38 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.04 1.70 7.60 -2.39 -0.02 1.69 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 1.48 6.92 -2.39 -0.02 1.46 16 45 H 0.08 1.74 8.14 -2.39 -0.02 1.73 16 46 H 0.07 1.57 7.28 -2.39 -0.02 1.55 16 Total: -1.00 -72.63 371.21 -0.15 -72.78 By element: Atomic # 1 Polarization: 29.79 SS G_CDS: -2.03 Total: 27.75 kcal Atomic # 6 Polarization: 5.42 SS G_CDS: 5.54 Total: 10.96 kcal Atomic # 7 Polarization: -127.73 SS G_CDS: -5.62 Total: -133.35 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.06 Total: -24.77 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -72.63 -0.15 -72.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115624394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.520 kcal (2) G-P(sol) polarization free energy of solvation -72.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds