Wall clock time and date at job start Wed Apr 1 2020 04:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99880 * 2 1 4 4 H 1.48498 * 109.46967 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.46873 * 300.00258 * 3 2 1 6 6 H 1.48493 * 109.47112 * 59.99870 * 3 2 1 7 7 C 1.38806 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00343 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99873 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99987 * 174.25667 * 9 7 2 11 11 C 1.53005 * 109.47087 * 62.84297 * 10 9 7 12 12 N 1.46501 * 109.46911 * 54.62968 * 11 10 9 13 13 C 1.34778 * 119.99734 * 176.62744 * 12 11 10 14 14 O 1.21573 * 120.00103 * 359.97438 * 13 12 11 15 15 C 1.47691 * 120.00022 * 179.97438 * 13 12 11 16 16 C 1.41600 * 120.03313 * 0.02562 * 15 13 12 17 17 C 1.35780 * 119.55104 * 179.97438 * 16 15 13 18 18 C 1.40857 * 119.39071 * 359.97438 * 17 16 15 19 19 N 1.32490 * 133.41869 * 179.97438 * 18 17 16 20 20 N 1.28535 * 110.24033 * 180.02562 * 19 18 17 21 21 N 1.28979 * 110.84453 * 0.02562 * 20 19 18 22 22 N 1.36929 * 119.93034 * 0.02562 * 18 17 16 23 23 C 1.35498 * 120.84589 * 359.97438 * 22 18 17 24 24 C 1.52998 * 109.47356 * 182.84223 * 10 9 7 25 25 C 1.53005 * 109.46962 * 59.99997 * 24 10 9 26 26 C 1.53002 * 109.46957 * 60.00242 * 25 24 10 27 27 C 1.53000 * 109.46877 * 300.00003 * 26 25 24 28 28 C 1.52995 * 109.47386 * 60.00257 * 27 26 25 29 29 H 0.96993 * 119.99892 * 359.97438 * 1 2 3 30 30 H 0.96992 * 120.00082 * 354.25731 * 9 7 2 31 31 H 1.08993 * 109.47017 * 294.62548 * 11 10 9 32 32 H 1.09000 * 109.47193 * 174.62588 * 11 10 9 33 33 H 0.96998 * 120.00270 * 356.62424 * 12 11 10 34 34 H 1.08003 * 120.22310 * 359.95704 * 16 15 13 35 35 H 1.07998 * 120.30469 * 180.02562 * 17 16 15 36 36 H 1.07996 * 119.82500 * 180.02562 * 23 22 18 37 37 H 1.08997 * 109.47339 * 179.97438 * 24 10 9 38 38 H 1.09003 * 109.47314 * 300.00540 * 24 10 9 39 39 H 1.08997 * 109.47046 * 300.00121 * 25 24 10 40 40 H 1.09001 * 109.46785 * 180.02562 * 25 24 10 41 41 H 1.08996 * 109.46729 * 179.97438 * 26 25 24 42 42 H 1.08997 * 109.47341 * 60.00060 * 26 25 24 43 43 H 1.09000 * 109.47017 * 299.99659 * 27 26 25 44 44 H 1.08999 * 109.46763 * 180.02562 * 27 26 25 45 45 H 1.09003 * 109.47357 * 179.97438 * 28 27 26 46 46 H 1.08997 * 109.47044 * 59.99813 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 2.0526 -3.6535 -0.1281 11 6 2.9862 -3.8285 1.0715 12 7 2.2149 -3.7123 2.3115 13 6 2.8195 -3.9006 3.5013 14 8 4.0048 -4.1672 3.5454 15 6 2.0421 -3.7829 4.7515 16 6 0.6614 -3.4728 4.7010 17 6 -0.0441 -3.3676 5.8564 18 6 0.6109 -3.5694 7.0870 19 7 0.2085 -3.5362 8.3489 20 7 1.1921 -3.7911 9.1361 21 7 2.2737 -4.0020 8.4658 22 7 1.9470 -3.8682 7.1089 23 6 2.6542 -3.9741 5.9580 24 6 1.0550 -4.8127 -0.1712 25 6 0.1214 -4.6377 -1.3708 26 6 0.9449 -4.6252 -2.6603 27 6 1.9425 -3.4660 -2.6170 28 6 2.8760 -3.6410 -1.4176 29 1 -0.4849 0.8400 0.0004 30 1 0.3594 -2.3901 0.0839 31 1 3.7557 -3.0569 1.0485 32 1 3.4555 -4.8112 1.0263 33 1 1.2691 -3.4998 2.2764 34 1 0.1727 -3.3209 3.7499 35 1 -1.0978 -3.1320 5.8320 36 1 3.7072 -4.2109 5.9945 37 1 1.5959 -5.7542 -0.2666 38 1 0.4683 -4.8216 0.7474 39 1 -0.4194 -3.6961 -1.2759 40 1 -0.5896 -5.4633 -1.4012 41 1 0.2797 -4.5010 -3.5148 42 1 1.4857 -5.5667 -2.7551 43 1 1.4016 -2.5244 -2.5222 44 1 2.5288 -3.4568 -3.5359 45 1 3.5871 -2.8154 -1.3870 46 1 3.4169 -4.5825 -1.5125 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001115627715.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:04 Heat of formation + Delta-G solvation = 97.515294 kcal Electronic energy + Delta-G solvation = -30485.604818 eV Core-core repulsion = 26412.476416 eV Total energy + Delta-G solvation = -4073.128402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.64455 -41.39611 -40.16438 -39.11038 -36.02110 -35.38578 -34.97960 -33.55178 -32.60956 -31.74102 -31.48758 -30.23352 -27.58123 -25.89544 -25.63304 -25.44395 -24.05382 -23.42296 -22.24536 -21.67399 -20.12276 -19.70441 -19.06591 -18.63388 -18.56449 -18.13966 -17.01138 -16.67523 -16.24106 -16.14013 -16.04611 -15.65511 -15.49841 -15.07672 -14.91322 -14.66418 -14.59705 -14.31046 -14.17801 -13.80267 -13.50426 -13.34954 -13.20723 -12.93526 -12.86202 -12.83052 -12.80117 -12.54021 -12.45488 -12.36035 -11.98528 -11.81730 -11.62508 -11.37862 -11.33001 -11.25271 -11.01460 -10.67699 -10.64814 -10.02788 -9.79997 -8.85327 -7.83749 -5.06721 -1.08515 -0.68152 0.38641 0.68936 1.45913 1.49529 1.53039 1.55590 2.06907 2.26178 2.46114 2.62094 2.91253 3.27489 3.43448 3.50494 3.65018 3.81237 3.88583 3.98510 4.01207 4.07914 4.20168 4.40201 4.45340 4.54612 4.59944 4.65092 4.73268 4.81327 4.84181 4.88808 4.92800 4.96365 5.03059 5.06574 5.14576 5.24632 5.29864 5.42318 5.54749 5.57760 5.60459 5.68358 5.73542 5.87047 6.40054 6.51590 7.04768 7.10985 7.50519 8.22474 8.49127 9.38306 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.011195 B = 0.003325 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.609007 B = 8419.735794 C = 9571.131496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C -0.055 4.055 3 Si 0.934 3.066 4 H -0.279 1.279 5 H -0.304 1.304 6 H -0.303 1.303 7 C -0.202 4.202 8 H 0.063 0.937 9 N -0.709 5.709 10 C 0.189 3.811 11 C 0.120 3.880 12 N -0.679 5.679 13 C 0.567 3.433 14 O -0.572 6.572 15 C -0.133 4.133 16 C -0.016 4.016 17 C -0.081 4.081 18 C 0.243 3.757 19 N -0.344 5.344 20 N -0.023 5.023 21 N -0.127 5.127 22 N -0.306 5.306 23 C 0.168 3.832 24 C -0.109 4.109 25 C -0.113 4.113 26 C -0.109 4.109 27 C -0.107 4.107 28 C -0.115 4.115 29 H 0.245 0.755 30 H 0.380 0.620 31 H 0.040 0.960 32 H 0.076 0.924 33 H 0.411 0.589 34 H 0.190 0.810 35 H 0.207 0.793 36 H 0.202 0.798 37 H 0.084 0.916 38 H 0.070 0.930 39 H 0.045 0.955 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.041 0.959 44 H 0.052 0.948 45 H 0.039 0.961 46 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 -13.051 1.577 13.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.248 4.248 3 Si 0.768 3.232 4 H -0.204 1.204 5 H -0.232 1.232 6 H -0.231 1.231 7 C -0.335 4.335 8 H 0.081 0.919 9 N -0.350 5.350 10 C 0.099 3.901 11 C -0.006 4.006 12 N -0.329 5.329 13 C 0.352 3.648 14 O -0.453 6.453 15 C -0.142 4.142 16 C -0.042 4.042 17 C -0.103 4.103 18 C -0.010 4.010 19 N -0.204 5.204 20 N -0.016 5.016 21 N -0.110 5.110 22 N -0.084 5.084 23 C 0.038 3.962 24 C -0.147 4.147 25 C -0.151 4.151 26 C -0.147 4.147 27 C -0.145 4.145 28 C -0.155 4.155 29 H 0.055 0.945 30 H 0.214 0.786 31 H 0.059 0.941 32 H 0.095 0.905 33 H 0.250 0.750 34 H 0.207 0.793 35 H 0.224 0.776 36 H 0.219 0.781 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.064 0.936 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.091 0.909 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 0.201 -13.228 3.229 13.618 hybrid contribution 0.124 1.885 -0.818 2.058 sum 0.324 -11.343 2.410 11.601 Atomic orbital electron populations 1.69710 1.05497 1.25034 1.60314 1.25006 0.95792 0.98999 1.05032 0.85657 0.78430 0.83052 0.76080 1.20375 1.23178 1.23082 1.19196 0.90732 0.84860 1.38676 0.91891 1.42502 1.05929 0.99828 1.86709 1.20030 0.91792 0.86957 0.91362 1.21871 0.94524 1.00502 0.83742 1.45584 1.14390 1.68240 1.04701 1.17639 0.86205 0.77597 0.83376 1.90800 1.16224 1.50778 1.87537 1.19679 0.95790 1.06379 0.92366 1.21814 0.91011 0.90392 1.01006 1.20755 1.03663 1.01426 0.84476 1.23592 0.82978 0.97436 0.96978 1.75094 1.21917 1.26161 0.97231 1.77828 0.93588 1.06217 1.24014 1.82784 1.18181 1.28854 0.81184 1.48764 1.09626 1.42273 1.07727 1.21834 0.99768 0.94400 0.80209 1.21697 0.97098 0.97165 0.98704 1.21441 0.97774 1.01357 0.94519 1.21455 0.97531 0.98195 0.97492 1.21300 0.97462 0.98854 0.96862 1.21789 0.97734 1.00632 0.95337 0.94544 0.78582 0.94124 0.90539 0.74988 0.79339 0.77598 0.78127 0.89779 0.91092 0.93578 0.90809 0.92699 0.90932 0.94006 0.92939 0.94232 0.90885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -49.94 13.07 21.65 0.28 -49.66 16 2 C -0.06 -2.74 5.50 84.86 0.47 -2.27 16 3 Si 0.93 42.71 29.55 68.60 2.03 44.74 16 4 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 6 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 7 C -0.20 -9.09 8.70 84.03 0.73 -8.36 16 8 H 0.06 2.92 6.77 -2.91 -0.02 2.90 16 9 N -0.71 -25.85 3.40 -303.34 -1.03 -26.88 16 10 C 0.19 5.24 0.41 3.61 0.00 5.24 16 11 C 0.12 3.30 4.37 86.38 0.38 3.67 16 12 N -0.68 -16.57 5.05 -466.12 -2.35 -18.93 16 13 C 0.57 14.25 7.77 86.74 0.67 14.93 16 14 O -0.57 -18.08 16.28 -3.95 -0.06 -18.15 16 15 C -0.13 -2.64 5.84 -20.33 -0.12 -2.76 16 16 C -0.02 -0.24 9.53 22.53 0.21 -0.02 16 17 C -0.08 -1.23 10.09 22.34 0.23 -1.01 16 18 C 0.24 5.66 8.02 134.16 1.08 6.74 16 19 N -0.34 -9.69 12.26 -55.52 -0.68 -10.37 16 20 N -0.02 -0.71 13.35 37.02 0.49 -0.22 16 21 N -0.13 -3.66 13.99 37.02 0.52 -3.14 16 22 N -0.31 -7.53 3.92 -192.06 -0.75 -8.28 16 23 C 0.17 3.55 10.77 83.75 0.90 4.45 16 24 C -0.11 -2.31 4.65 30.60 0.14 -2.16 16 25 C -0.11 -2.58 5.75 30.60 0.18 -2.40 16 26 C -0.11 -2.51 5.92 30.59 0.18 -2.33 16 27 C -0.11 -3.09 5.76 30.59 0.18 -2.91 16 28 C -0.12 -3.26 4.52 30.59 0.14 -3.13 16 29 H 0.25 12.96 8.31 -92.71 -0.77 12.19 16 30 H 0.38 14.95 6.63 -92.71 -0.61 14.34 16 31 H 0.04 1.37 7.50 -2.39 -0.02 1.36 16 32 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.41 8.91 5.43 -92.71 -0.50 8.41 16 34 H 0.19 1.99 6.44 -2.91 -0.02 1.97 16 35 H 0.21 1.82 8.06 -2.91 -0.02 1.79 16 36 H 0.20 3.90 7.57 -2.91 -0.02 3.88 16 37 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.07 1.33 7.28 -2.39 -0.02 1.31 16 39 H 0.05 1.34 6.92 -2.39 -0.02 1.32 16 40 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.04 1.56 7.60 -2.39 -0.02 1.54 16 44 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.04 1.31 7.24 -2.39 -0.02 1.29 16 46 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -63.16 372.54 3.73 -59.43 By element: Atomic # 1 Polarization: 23.85 SS G_CDS: -0.08 Total: 23.77 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: 5.36 Total: 7.69 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -3.52 Total: -117.48 kcal Atomic # 8 Polarization: -18.08 SS G_CDS: -0.06 Total: -18.15 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -63.16 3.73 -59.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001115627715.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.946 kcal (2) G-P(sol) polarization free energy of solvation -63.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.431 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds