Wall clock time and date at job start Wed Apr 1 2020 03:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46752 * 2 1 4 4 F 1.39897 * 109.47046 * 119.99864 * 2 1 3 5 5 C 1.52995 * 109.47063 * 240.00239 * 2 1 3 6 6 C 1.53001 * 109.47265 * 174.99912 * 5 2 1 7 7 N 1.46898 * 109.47219 * 179.97438 * 6 5 2 8 8 C 1.46901 * 110.99942 * 179.97438 * 7 6 5 9 9 C 1.53948 * 113.57763 * 155.00089 * 8 7 6 10 10 C 1.52908 * 86.78192 * 139.33638 * 9 8 7 11 11 C 1.52910 * 88.04259 * 335.10001 * 10 9 8 12 12 C 1.52917 * 121.13266 * 100.81575 * 10 9 8 13 13 C 1.53957 * 86.77928 * 150.62095 * 12 10 9 14 14 N 1.46499 * 113.58030 * 220.66444 * 13 12 10 15 15 C 1.34776 * 119.99661 * 205.00293 * 14 13 12 16 16 O 1.21276 * 120.00459 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99358 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.46682 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99945 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99888 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00025 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00109 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00083 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47231 * 59.99441 * 23 21 19 25 25 H 1.48502 * 109.47216 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46816 * 299.99566 * 23 21 19 27 27 C 1.52909 * 121.14164 * 209.37837 * 10 9 8 28 28 H 1.08999 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47040 * 300.00187 * 1 2 3 30 30 H 1.08997 * 109.46954 * 59.99467 * 1 2 3 31 31 H 1.09003 * 109.47263 * 54.99561 * 5 2 1 32 32 H 1.09008 * 109.47092 * 295.00179 * 5 2 1 33 33 H 1.08997 * 109.46855 * 59.99770 * 6 5 2 34 34 H 1.08996 * 109.47067 * 299.99793 * 6 5 2 35 35 H 1.00904 * 110.99935 * 56.04318 * 7 6 5 36 36 H 1.08999 * 112.87377 * 23.86280 * 8 7 6 37 37 H 1.09002 * 113.66248 * 24.86640 * 9 8 7 38 38 H 1.09000 * 113.66478 * 253.80857 * 9 8 7 39 39 H 1.09000 * 113.66318 * 139.36539 * 11 10 9 40 40 H 1.08992 * 113.66269 * 270.42878 * 11 10 9 41 41 H 1.08997 * 113.66031 * 265.09229 * 12 10 9 42 42 H 1.09002 * 113.66187 * 36.15635 * 12 10 9 43 43 H 1.09001 * 113.57949 * 89.86751 * 13 12 10 44 44 H 0.96996 * 119.99947 * 24.99948 * 14 13 12 45 45 H 1.09001 * 109.47290 * 299.99716 * 17 15 14 46 46 H 1.09000 * 109.47468 * 60.00492 * 17 15 14 47 47 H 0.97000 * 119.99840 * 180.02562 * 22 21 19 48 48 H 1.09001 * 113.66026 * 323.85673 * 27 10 9 49 49 H 1.08998 * 113.66179 * 94.81961 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0400 -0.7212 -1.2492 6 6 3.5649 -0.6132 -1.3137 7 7 4.0546 -1.3062 -2.5129 8 6 5.5181 -1.2226 -2.6084 9 6 6.1484 -2.3672 -3.4224 10 6 7.0800 -1.3129 -4.0212 11 6 6.0097 -0.2662 -3.7101 12 6 8.5152 -1.1495 -3.5195 13 6 8.8642 -0.6662 -4.9390 14 7 10.1441 -1.1787 -5.4344 15 6 10.8218 -0.4982 -6.3800 16 8 10.3720 0.5381 -6.8211 17 6 12.1387 -1.0252 -6.8892 18 16 12.7955 0.1028 -8.1432 19 6 14.2919 -0.7328 -8.5526 20 1 14.5460 -1.6586 -8.0582 21 6 15.1444 -0.2005 -9.5099 22 7 14.8349 0.9283 -10.1122 23 14 16.7304 -1.0866 -9.9444 24 1 16.4143 -2.4429 -10.4599 25 1 17.4570 -0.3183 -10.9870 26 1 17.5802 -1.2033 -8.7323 27 6 7.6468 -1.4687 -5.4328 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 1.6053 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9995 -1.0727 -0.4260 34 1 3.8532 0.4370 -1.3574 35 1 3.6167 -0.9413 -3.3455 36 1 5.9970 -1.0589 -1.6431 37 1 5.4688 -2.8136 -4.1484 38 1 6.6624 -3.1081 -2.8100 39 1 6.4129 0.6714 -3.3274 40 1 5.2911 -0.1220 -4.5168 41 1 8.6266 -0.3800 -2.7556 42 1 8.9935 -2.0906 -3.2479 43 1 8.7592 0.4107 -5.0710 44 1 10.5037 -2.0077 -5.0819 45 1 12.8445 -1.1001 -6.0619 46 1 11.9897 -2.0109 -7.3301 47 1 15.4305 1.3001 -10.7814 48 1 7.8810 -2.4995 -5.6989 49 1 7.0637 -0.9555 -6.1975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120666004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:20 Heat of formation + Delta-G solvation = -63.084076 kcal Electronic energy + Delta-G solvation = -26304.868879 eV Core-core repulsion = 22308.007604 eV Total energy + Delta-G solvation = -3996.861275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.07854 -40.99913 -38.94176 -37.11155 -35.24847 -33.32050 -32.42314 -31.94094 -29.16433 -28.43612 -26.10978 -26.05230 -25.49065 -23.82903 -22.72287 -21.83924 -20.86408 -20.33008 -18.29857 -17.75311 -17.25769 -16.50959 -16.38331 -16.15898 -15.89269 -15.48585 -15.40418 -15.16722 -14.82836 -14.80027 -14.30018 -14.09568 -13.55186 -13.32512 -13.20287 -13.06699 -12.97856 -12.83104 -12.73916 -12.58227 -12.41097 -12.30414 -12.05686 -11.82114 -11.53401 -11.37043 -11.29805 -11.20797 -11.04038 -11.03416 -10.78234 -10.64423 -10.41521 -10.16499 -9.80573 -9.34344 -9.05628 -8.81589 -8.78209 -8.23290 -6.49321 -6.20999 -3.91598 3.06182 3.09002 3.23878 3.28078 3.32440 3.52370 3.74023 4.09500 4.10622 4.18584 4.19820 4.21231 4.23419 4.32197 4.39619 4.50722 4.60746 4.73823 4.78465 4.84610 4.97077 5.03405 5.12052 5.14075 5.14114 5.28736 5.31840 5.41351 5.44840 5.45789 5.50167 5.54129 5.55358 5.64223 5.65507 5.70110 5.75961 5.79595 5.90137 5.97651 6.06519 6.15077 6.21476 6.64174 6.71542 6.93908 7.59772 7.75300 8.35573 8.64006 9.24180 10.86404 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.049480 B = 0.001319 C = 0.001307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.751990 B =21228.876127 C =21418.957935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.081 0.919 4 F -0.214 7.214 5 C -0.146 4.146 6 C 0.056 3.944 7 N -0.679 5.679 8 C 0.068 3.932 9 C -0.109 4.109 10 C -0.103 4.103 11 C -0.143 4.143 12 C -0.121 4.121 13 C 0.129 3.871 14 N -0.729 5.729 15 C 0.532 3.468 16 O -0.519 6.519 17 C -0.154 4.154 18 S -0.061 6.061 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.274 1.274 27 C -0.136 4.136 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.032 0.968 35 H 0.342 0.658 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.398 0.602 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.269 0.731 48 H 0.086 0.914 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.713 -5.364 20.301 33.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.052 3.948 3 H 0.099 0.901 4 F -0.195 7.195 5 C -0.184 4.184 6 C -0.073 4.073 7 N -0.309 5.309 8 C -0.042 4.042 9 C -0.147 4.147 10 C -0.104 4.104 11 C -0.182 4.182 12 C -0.159 4.159 13 C 0.024 3.976 14 N -0.382 5.382 15 C 0.319 3.681 16 O -0.393 6.393 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.199 1.199 25 H -0.208 1.208 26 H -0.199 1.199 27 C -0.175 4.175 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.103 0.897 33 H 0.095 0.905 34 H 0.050 0.950 35 H 0.161 0.839 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.108 0.892 43 H 0.130 0.870 44 H 0.232 0.768 45 H 0.108 0.892 46 H 0.108 0.892 47 H 0.079 0.921 48 H 0.105 0.895 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -27.396 -4.112 19.757 34.026 hybrid contribution 1.865 -1.262 0.144 2.257 sum -25.531 -5.374 19.901 32.814 Atomic orbital electron populations 1.22376 0.94195 1.03729 1.03489 1.21547 0.94890 0.96175 0.82220 0.90052 1.92826 1.90264 1.83373 1.53051 1.22208 0.96125 1.02761 0.97334 1.21989 0.94372 0.96567 0.94400 1.60451 1.05453 1.59700 1.05271 1.23047 0.86984 0.96440 0.97704 1.22873 0.97121 0.96035 0.98682 1.22058 0.93221 0.97973 0.97183 1.23425 0.98110 0.97537 0.99094 1.23089 0.94064 1.01956 0.96828 1.22385 0.82421 0.99724 0.93115 1.46002 1.22426 1.27338 1.42385 1.20344 0.85561 0.83910 0.78312 1.90689 1.68828 1.23148 1.56640 1.23546 0.96325 1.05652 1.04987 1.85386 1.23956 1.29886 1.44166 1.22834 1.06824 1.11549 1.27260 0.90990 1.24984 0.98401 0.95040 0.95084 1.70011 1.37188 1.18166 1.24967 0.86229 0.81673 0.79388 0.78245 1.19937 1.20799 1.19938 1.23291 0.97182 1.01223 0.95798 0.91281 0.91401 0.90640 0.90203 0.89741 0.90474 0.95002 0.83896 0.88630 0.89437 0.91260 0.91211 0.89495 0.90794 0.89241 0.86976 0.76795 0.89249 0.89245 0.92136 0.89534 0.90984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.65 9.65 37.16 0.36 -0.29 16 2 C 0.09 0.43 3.96 -26.73 -0.11 0.33 16 3 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 4 F -0.21 -1.72 16.76 2.25 0.04 -1.68 16 5 C -0.15 -0.69 5.24 -26.73 -0.14 -0.83 16 6 C 0.06 0.33 5.45 -3.82 -0.02 0.31 16 7 N -0.68 -4.35 6.62 -105.69 -0.70 -5.05 16 8 C 0.07 0.47 4.18 -66.73 -0.28 0.19 16 9 C -0.11 -0.79 7.64 -26.28 -0.20 -0.99 16 10 C -0.10 -0.82 1.11 -154.71 -0.17 -0.99 16 11 C -0.14 -1.03 7.46 -26.28 -0.20 -1.22 16 12 C -0.12 -1.02 7.59 -26.28 -0.20 -1.22 16 13 C 0.13 1.50 4.24 -66.95 -0.28 1.22 16 14 N -0.73 -9.69 5.35 -52.85 -0.28 -9.98 16 15 C 0.53 9.96 7.85 -10.98 -0.09 9.88 16 16 O -0.52 -11.83 15.46 5.56 0.09 -11.74 16 17 C -0.15 -3.13 6.16 36.01 0.22 -2.90 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 20 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 23 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 24 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 27 C -0.14 -1.36 7.64 -26.28 -0.20 -1.56 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.08 0.48 8.14 -51.92 -0.42 0.05 16 33 H 0.08 0.55 7.93 -51.93 -0.41 0.14 16 34 H 0.03 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.34 1.89 8.19 -39.29 -0.32 1.57 16 36 H 0.10 0.67 7.87 -51.93 -0.41 0.27 16 37 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.60 7.82 -51.93 -0.41 0.20 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.67 8.12 -51.93 -0.42 0.24 16 43 H 0.11 1.55 7.47 -51.93 -0.39 1.17 16 44 H 0.40 4.12 8.73 -40.82 -0.36 3.76 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 47 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 49 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 416.37 15.07 6.27 6.27 Total: -1.00 -34.29 416.37 -10.79 -45.08 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -8.60 Total: 1.21 kcal Atomic # 6 Polarization: -10.02 SS G_CDS: -1.11 Total: -11.12 kcal Atomic # 7 Polarization: -40.30 SS G_CDS: -0.25 Total: -40.55 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.09 Total: -11.74 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.29 -10.79 -45.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120666004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.008 kcal (2) G-P(sol) polarization free energy of solvation -34.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds