Wall clock time and date at job start Wed Apr 1 2020 03:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09007 * 109.46752 * 2 1 4 4 F 1.39897 * 109.47046 * 119.99864 * 2 1 3 5 5 C 1.52995 * 109.47063 * 240.00239 * 2 1 3 6 6 C 1.53001 * 109.47265 * 174.99912 * 5 2 1 7 7 N 1.46898 * 109.47219 * 179.97438 * 6 5 2 8 8 C 1.46901 * 110.99942 * 179.97438 * 7 6 5 9 9 C 1.53948 * 113.57763 * 155.00089 * 8 7 6 10 10 C 1.52908 * 86.78192 * 139.33638 * 9 8 7 11 11 C 1.52910 * 88.04259 * 335.10001 * 10 9 8 12 12 C 1.52917 * 121.13266 * 100.81575 * 10 9 8 13 13 C 1.53957 * 86.77928 * 150.62095 * 12 10 9 14 14 N 1.46499 * 113.58030 * 220.66444 * 13 12 10 15 15 C 1.34776 * 119.99661 * 205.00293 * 14 13 12 16 16 O 1.21276 * 120.00459 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99358 * 179.97438 * 15 14 13 18 18 S 1.81002 * 109.46682 * 179.97438 * 17 15 14 19 19 C 1.76205 * 99.99945 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99888 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00025 * 180.02562 * 19 18 17 22 22 N 1.31634 * 120.00109 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 120.00083 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47231 * 59.99441 * 23 21 19 25 25 H 1.48502 * 109.47216 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46816 * 299.99566 * 23 21 19 27 27 C 1.52909 * 121.14164 * 209.37837 * 10 9 8 28 28 H 1.08999 * 109.47018 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47040 * 300.00187 * 1 2 3 30 30 H 1.08997 * 109.46954 * 59.99467 * 1 2 3 31 31 H 1.09003 * 109.47263 * 54.99561 * 5 2 1 32 32 H 1.09008 * 109.47092 * 295.00179 * 5 2 1 33 33 H 1.08997 * 109.46855 * 59.99770 * 6 5 2 34 34 H 1.08996 * 109.47067 * 299.99793 * 6 5 2 35 35 H 1.00904 * 110.99935 * 56.04318 * 7 6 5 36 36 H 1.08999 * 112.87377 * 23.86280 * 8 7 6 37 37 H 1.09002 * 113.66248 * 24.86640 * 9 8 7 38 38 H 1.09000 * 113.66478 * 253.80857 * 9 8 7 39 39 H 1.09000 * 113.66318 * 139.36539 * 11 10 9 40 40 H 1.08992 * 113.66269 * 270.42878 * 11 10 9 41 41 H 1.08997 * 113.66031 * 265.09229 * 12 10 9 42 42 H 1.09002 * 113.66187 * 36.15635 * 12 10 9 43 43 H 1.09001 * 113.57949 * 89.86751 * 13 12 10 44 44 H 0.96996 * 119.99947 * 24.99948 * 14 13 12 45 45 H 1.09001 * 109.47290 * 299.99716 * 17 15 14 46 46 H 1.09000 * 109.47468 * 60.00492 * 17 15 14 47 47 H 0.97000 * 119.99840 * 180.02562 * 22 21 19 48 48 H 1.09001 * 113.66026 * 323.85673 * 27 10 9 49 49 H 1.08998 * 113.66179 * 94.81961 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0278 0.0000 4 9 1.9964 -0.6595 1.1423 5 6 2.0400 -0.7212 -1.2492 6 6 3.5649 -0.6132 -1.3137 7 7 4.0546 -1.3062 -2.5129 8 6 5.5181 -1.2226 -2.6084 9 6 6.1484 -2.3672 -3.4224 10 6 7.0800 -1.3129 -4.0212 11 6 6.0097 -0.2662 -3.7101 12 6 8.5152 -1.1495 -3.5195 13 6 8.8642 -0.6662 -4.9390 14 7 10.1441 -1.1787 -5.4344 15 6 10.8218 -0.4982 -6.3800 16 8 10.3720 0.5381 -6.8211 17 6 12.1387 -1.0252 -6.8892 18 16 12.7955 0.1028 -8.1432 19 6 14.2919 -0.7328 -8.5526 20 1 14.5460 -1.6586 -8.0582 21 6 15.1444 -0.2005 -9.5099 22 7 14.8349 0.9283 -10.1122 23 14 16.7304 -1.0866 -9.9444 24 1 16.4143 -2.4429 -10.4599 25 1 17.4570 -0.3183 -10.9870 26 1 17.5802 -1.2033 -8.7323 27 6 7.6468 -1.4687 -5.4328 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8899 31 1 1.6053 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9995 -1.0727 -0.4260 34 1 3.8532 0.4370 -1.3574 35 1 3.6167 -0.9413 -3.3455 36 1 5.9970 -1.0589 -1.6431 37 1 5.4688 -2.8136 -4.1484 38 1 6.6624 -3.1081 -2.8100 39 1 6.4129 0.6714 -3.3274 40 1 5.2911 -0.1220 -4.5168 41 1 8.6266 -0.3800 -2.7556 42 1 8.9935 -2.0906 -3.2479 43 1 8.7592 0.4107 -5.0710 44 1 10.5037 -2.0077 -5.0819 45 1 12.8445 -1.1001 -6.0619 46 1 11.9897 -2.0109 -7.3301 47 1 15.4305 1.3001 -10.7814 48 1 7.8810 -2.4995 -5.6989 49 1 7.0637 -0.9555 -6.1975 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120666004.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:19 Heat of formation + Delta-G solvation = -85.545283 kcal Electronic energy + Delta-G solvation = -26305.842870 eV Core-core repulsion = 22308.007604 eV Total energy + Delta-G solvation = -3997.835266 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.58460 -41.78242 -40.25736 -37.82991 -35.95593 -34.58662 -34.18927 -32.73867 -30.53646 -29.00150 -27.66793 -26.81670 -26.69639 -24.47177 -23.40600 -22.30943 -21.81268 -21.39298 -19.86457 -18.89922 -17.86066 -17.68442 -17.40946 -16.87802 -16.79498 -16.52521 -16.44354 -16.07933 -15.91997 -15.83823 -15.78683 -14.84717 -14.73669 -14.56946 -14.11688 -13.93020 -13.74397 -13.67476 -13.49349 -13.28091 -13.17056 -13.11336 -13.06936 -12.86841 -12.86146 -12.64952 -12.46731 -12.19105 -11.97270 -11.89186 -11.73225 -11.60027 -11.30546 -11.12787 -11.09842 -10.98696 -10.72670 -10.28058 -9.99211 -9.29523 -8.66942 -8.34458 -6.12891 1.27415 1.44107 1.47288 1.57232 1.60740 2.27094 2.33665 2.99661 3.05413 3.32328 3.46095 3.47202 3.61437 3.70838 3.80046 3.81672 3.87880 3.97898 4.00357 4.01444 4.05323 4.31050 4.37279 4.41526 4.44117 4.46543 4.51039 4.64225 4.73156 4.77783 4.80866 4.86366 4.89321 4.93251 4.98287 5.02437 5.08981 5.13673 5.21503 5.24818 5.29156 5.37329 5.41476 5.44961 5.62224 6.12959 6.19614 6.48526 6.54814 7.06673 7.27208 8.74604 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.049480 B = 0.001319 C = 0.001307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 565.751990 B =21228.876127 C =21418.957935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.081 3.919 3 H 0.093 0.907 4 F -0.234 7.234 5 C -0.139 4.139 6 C 0.058 3.942 7 N -0.683 5.683 8 C 0.074 3.926 9 C -0.103 4.103 10 C -0.095 4.095 11 C -0.142 4.142 12 C -0.106 4.106 13 C 0.114 3.886 14 N -0.702 5.702 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.130 4.130 18 S -0.153 6.153 19 C -0.548 4.548 20 H 0.083 0.917 21 C 0.015 3.985 22 N -0.912 5.912 23 Si 0.998 3.002 24 H -0.262 1.262 25 H -0.279 1.279 26 H -0.262 1.262 27 C -0.134 4.134 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.091 0.909 31 H 0.096 0.904 32 H 0.074 0.926 33 H 0.062 0.938 34 H 0.036 0.964 35 H 0.348 0.652 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.089 0.911 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.086 0.914 44 H 0.416 0.584 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.271 0.729 48 H 0.094 0.906 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.952 -7.374 21.620 35.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.045 3.955 3 H 0.111 0.889 4 F -0.216 7.216 5 C -0.177 4.177 6 C -0.071 4.071 7 N -0.313 5.313 8 C -0.036 4.036 9 C -0.141 4.141 10 C -0.097 4.097 11 C -0.181 4.181 12 C -0.144 4.144 13 C 0.009 3.991 14 N -0.355 5.355 15 C 0.319 3.681 16 O -0.447 6.447 17 C -0.282 4.282 18 S 0.074 5.926 19 C -0.696 4.696 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.186 1.186 25 H -0.204 1.204 26 H -0.186 1.186 27 C -0.172 4.172 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.110 0.890 31 H 0.115 0.885 32 H 0.093 0.907 33 H 0.081 0.919 34 H 0.054 0.946 35 H 0.168 0.832 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.104 0.896 44 H 0.254 0.746 45 H 0.128 0.872 46 H 0.128 0.872 47 H 0.080 0.920 48 H 0.112 0.888 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -27.665 -6.169 21.125 35.351 hybrid contribution 1.821 -0.652 -0.193 1.944 sum -25.844 -6.820 20.933 33.950 Atomic orbital electron populations 1.22368 0.93148 1.03725 1.04317 1.21781 0.95799 0.96544 0.81398 0.88888 1.92785 1.90610 1.83861 1.54305 1.22146 0.95311 1.02306 0.97940 1.21954 0.95078 0.96514 0.93591 1.60437 1.05214 1.59969 1.05720 1.22969 0.87333 0.95897 0.97417 1.22835 0.96743 0.95956 0.98585 1.21985 0.93330 0.98886 0.95453 1.23448 0.97934 0.97348 0.99405 1.23053 0.93969 1.02795 0.94567 1.22595 0.81859 0.98730 0.95949 1.45781 1.22325 1.27140 1.40245 1.20118 0.85280 0.83581 0.79081 1.90678 1.69861 1.25407 1.58744 1.23392 0.97324 1.04237 1.03204 1.85576 1.25273 1.33892 1.47827 1.23184 1.06931 1.11865 1.27625 0.89902 1.26123 1.02422 0.95757 0.94718 1.70181 1.38826 1.20076 1.25734 0.85009 0.76511 0.78217 0.78297 1.18639 1.20373 1.18629 1.23277 0.96164 1.00995 0.96802 0.91702 0.91399 0.89017 0.88533 0.90743 0.91912 0.94594 0.83241 0.88636 0.89547 0.90664 0.91574 0.89255 0.90186 0.87324 0.89613 0.74614 0.87210 0.87237 0.91986 0.88773 0.92269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 9.65 71.98 0.69 -0.36 16 2 C 0.08 0.71 3.96 30.59 0.12 0.83 16 3 H 0.09 0.58 8.14 -2.38 -0.02 0.57 16 4 F -0.23 -3.69 16.76 44.97 0.75 -2.94 16 5 C -0.14 -1.12 5.24 30.59 0.16 -0.96 16 6 C 0.06 0.61 5.45 86.30 0.47 1.08 16 7 N -0.68 -7.65 6.62 -488.30 -3.23 -10.89 16 8 C 0.07 0.88 4.18 45.55 0.19 1.07 16 9 C -0.10 -1.26 7.64 30.88 0.24 -1.02 16 10 C -0.10 -1.34 1.11 -52.31 -0.06 -1.40 16 11 C -0.14 -1.85 7.46 30.89 0.23 -1.62 16 12 C -0.11 -1.54 7.59 30.89 0.23 -1.30 16 13 C 0.11 2.53 4.24 45.63 0.19 2.72 16 14 N -0.70 -17.61 5.35 -439.51 -2.35 -19.97 16 15 C 0.53 19.83 7.85 87.66 0.69 20.52 16 16 O -0.57 -26.73 15.46 -3.02 -0.05 -26.77 16 17 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 18 S -0.15 -8.55 20.57 -56.49 -1.16 -9.72 16 19 C -0.55 -31.45 9.50 67.95 0.65 -30.80 16 20 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 21 C 0.01 0.83 5.49 84.86 0.47 1.30 16 22 N -0.91 -56.27 13.22 21.65 0.29 -55.99 16 23 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 26 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 27 C -0.13 -2.51 7.64 30.88 0.24 -2.27 16 28 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 31 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.06 0.85 7.93 -2.39 -0.02 0.83 16 34 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.35 3.24 8.19 -89.69 -0.73 2.51 16 36 H 0.10 1.16 7.87 -2.39 -0.02 1.14 16 37 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.09 1.13 7.82 -2.39 -0.02 1.11 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.11 1.21 8.12 -2.39 -0.02 1.19 16 43 H 0.09 2.43 7.47 -2.39 -0.02 2.41 16 44 H 0.42 7.42 8.73 -92.71 -0.81 6.61 16 45 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 46 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 47 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 48 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -76.97 416.37 0.62 -76.35 By element: Atomic # 1 Polarization: 21.89 SS G_CDS: -0.60 Total: 21.29 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 4.95 Total: -16.97 kcal Atomic # 7 Polarization: -81.54 SS G_CDS: -5.30 Total: -86.84 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.77 kcal Atomic # 9 Polarization: -3.69 SS G_CDS: 0.75 Total: -2.94 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.72 kcal Total: -76.97 0.62 -76.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120666004.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.193 kcal (2) G-P(sol) polarization free energy of solvation -76.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds