Wall clock time and date at job start Wed Apr 1 2020 03:26:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47578 * 2 1 4 4 F 1.39900 * 109.47235 * 239.99427 * 2 1 3 5 5 C 1.53002 * 109.47155 * 120.00203 * 2 1 3 6 6 C 1.53001 * 109.47435 * 185.00252 * 5 2 1 7 7 N 1.46894 * 109.47497 * 179.97438 * 6 5 2 8 8 C 1.46898 * 111.00259 * 179.97438 * 7 6 5 9 9 C 1.53952 * 113.58187 * 155.00002 * 8 7 6 10 10 C 1.52909 * 86.78355 * 139.33751 * 9 8 7 11 11 C 1.52914 * 88.04315 * 335.10152 * 10 9 8 12 12 C 1.52906 * 121.13590 * 100.82048 * 10 9 8 13 13 C 1.53947 * 86.78053 * 100.82014 * 12 10 9 14 14 N 1.46500 * 113.58000 * 139.33884 * 13 12 10 15 15 C 1.34779 * 120.00169 * 154.99479 * 14 13 12 16 16 O 1.21282 * 119.99922 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00037 * 180.02562 * 15 14 13 18 18 S 1.81000 * 109.46881 * 180.02562 * 17 15 14 19 19 C 1.76206 * 99.99929 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99720 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99847 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00398 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99778 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47405 * 89.99756 * 23 21 19 25 25 H 1.48503 * 109.46936 * 210.00169 * 23 21 19 26 26 H 1.48506 * 109.47119 * 329.99794 * 23 21 19 27 27 C 1.52901 * 121.13483 * 209.38235 * 10 9 8 28 28 H 1.09004 * 109.47286 * 300.00043 * 1 2 3 29 29 H 1.08996 * 109.47163 * 59.99725 * 1 2 3 30 30 H 1.09003 * 109.47631 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47728 * 64.99712 * 5 2 1 32 32 H 1.09008 * 109.47055 * 304.99613 * 5 2 1 33 33 H 1.08995 * 109.47103 * 59.99078 * 6 5 2 34 34 H 1.09008 * 109.46477 * 299.99715 * 6 5 2 35 35 H 1.00909 * 110.99893 * 56.03946 * 7 6 5 36 36 H 1.09000 * 112.87573 * 23.86038 * 8 7 6 37 37 H 1.09000 * 113.66174 * 24.86408 * 9 8 7 38 38 H 1.08997 * 113.66115 * 253.81358 * 9 8 7 39 39 H 1.08994 * 113.66145 * 139.37314 * 11 10 9 40 40 H 1.09000 * 113.66281 * 270.43068 * 11 10 9 41 41 H 1.08999 * 113.66138 * 346.34394 * 12 10 9 42 42 H 1.09000 * 113.66105 * 215.29114 * 12 10 9 43 43 H 1.09001 * 113.57904 * 270.05247 * 13 12 10 44 44 H 0.96996 * 119.99986 * 335.00076 * 14 13 12 45 45 H 1.09000 * 109.47247 * 60.00371 * 17 15 14 46 46 H 1.09001 * 109.47358 * 299.99798 * 17 15 14 47 47 H 0.96996 * 120.00393 * 180.02562 * 22 21 19 48 48 H 1.09004 * 113.66496 * 144.71378 * 27 10 9 49 49 H 1.09002 * 113.66688 * 13.65390 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0400 -0.7213 1.2492 6 6 3.5648 -0.6133 1.3138 7 7 4.0544 -1.3053 2.5135 8 6 5.5180 -1.2227 2.6084 9 6 6.0503 -1.3550 4.0469 10 6 7.1678 -2.2194 3.4621 11 6 6.2311 -2.5519 2.3001 12 6 8.5632 -1.6458 3.2136 13 6 8.9868 -2.3403 4.5206 14 7 10.3096 -2.9659 4.4497 15 6 11.0257 -3.1573 5.5754 16 8 10.5747 -2.8121 6.6470 17 6 12.3867 -3.8003 5.5024 18 16 13.0883 -3.9180 7.1668 19 6 14.6316 -4.6826 6.7948 20 1 14.8806 -4.9272 5.7728 21 6 15.5267 -4.9716 7.8155 22 7 15.2230 -4.6740 9.0612 23 14 17.1631 -5.7816 7.4211 24 1 18.1833 -4.7348 7.1593 25 1 17.5931 -6.6150 8.5725 26 1 17.0138 -6.6391 6.2178 27 6 7.8265 -3.3249 4.2878 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.7516 -1.7715 1.2057 32 1 1.6054 -0.2617 2.1370 33 1 3.8531 0.4369 1.3573 34 1 3.9994 -1.0729 0.4260 35 1 3.7449 -2.2656 2.5286 36 1 5.9303 -0.3710 2.0675 37 1 5.3801 -1.8983 4.7131 38 1 6.4013 -0.4146 4.4717 39 1 6.7267 -2.5675 1.3294 40 1 5.6118 -3.4315 2.4753 41 1 8.6041 -0.5577 3.2631 42 1 9.0504 -2.0494 2.3259 43 1 8.8606 -1.7173 5.4061 44 1 10.6701 -3.2422 3.5927 45 1 13.0408 -3.1961 4.8739 46 1 12.2942 -4.7993 5.0761 47 1 15.8487 -4.8756 9.7744 48 1 8.1068 -4.2005 3.7021 49 1 7.2790 -3.5783 5.1956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001120666008.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:24 Heat of formation + Delta-G solvation = -63.151608 kcal Electronic energy + Delta-G solvation = -26298.555585 eV Core-core repulsion = 22301.691382 eV Total energy + Delta-G solvation = -3996.864203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.10625 -40.99127 -38.93222 -37.10946 -35.24602 -33.32241 -32.42172 -31.93552 -29.16090 -28.43188 -26.13223 -26.03914 -25.48816 -23.80552 -22.71001 -21.86598 -20.87437 -20.33386 -18.26406 -17.74371 -17.20742 -16.47912 -16.41372 -16.24981 -16.02779 -15.48353 -15.32930 -15.03058 -14.79851 -14.74535 -14.44743 -14.12981 -13.49795 -13.34648 -13.28814 -13.04610 -12.90136 -12.82104 -12.79820 -12.57317 -12.42319 -12.28447 -11.96571 -11.89765 -11.52972 -11.36081 -11.25851 -11.21609 -11.05713 -11.01576 -10.79172 -10.69260 -10.40060 -10.16224 -9.79434 -9.33309 -9.06095 -8.81471 -8.76647 -8.22251 -6.48774 -6.20803 -3.91230 3.06746 3.09981 3.22844 3.28762 3.33474 3.52076 3.74365 4.07151 4.10388 4.17043 4.20984 4.21429 4.23495 4.32124 4.45969 4.53449 4.59732 4.67285 4.78044 4.86840 4.96311 5.03462 5.13452 5.14485 5.20378 5.22231 5.33121 5.39228 5.42056 5.44453 5.51002 5.52788 5.55273 5.63296 5.66645 5.72275 5.77472 5.82100 5.90613 5.97824 6.07215 6.15458 6.22505 6.64227 6.72396 6.93110 7.60336 7.75974 8.36042 8.64995 9.24524 10.86674 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.052603 B = 0.001314 C = 0.001296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.157315 B =21305.684419 C =21603.815937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.088 3.912 3 H 0.083 0.917 4 F -0.216 7.216 5 C -0.146 4.146 6 C 0.056 3.944 7 N -0.679 5.679 8 C 0.068 3.932 9 C -0.102 4.102 10 C -0.103 4.103 11 C -0.150 4.150 12 C -0.122 4.122 13 C 0.130 3.870 14 N -0.729 5.729 15 C 0.532 3.468 16 O -0.518 6.518 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.137 4.137 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.343 0.657 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.397 0.603 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.268 0.732 48 H 0.084 0.916 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.545 8.762 -20.194 35.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.051 3.949 3 H 0.101 0.899 4 F -0.197 7.197 5 C -0.184 4.184 6 C -0.073 4.073 7 N -0.309 5.309 8 C -0.042 4.042 9 C -0.140 4.140 10 C -0.104 4.104 11 C -0.189 4.189 12 C -0.160 4.160 13 C 0.024 3.976 14 N -0.382 5.382 15 C 0.318 3.682 16 O -0.392 6.392 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.176 4.176 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.054 0.946 35 H 0.162 0.838 36 H 0.113 0.887 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.103 0.897 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.132 0.868 44 H 0.231 0.769 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.078 0.922 48 H 0.103 0.897 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -28.341 9.871 -17.808 34.897 hybrid contribution 2.066 -1.783 -2.703 3.841 sum -26.275 8.089 -20.511 34.300 Atomic orbital electron populations 1.22373 0.94173 1.03674 1.03551 1.21563 0.94917 0.96342 0.82084 0.89854 1.92823 1.90286 1.83395 1.53193 1.22211 0.96321 1.02084 0.97785 1.21978 0.94119 0.99663 0.91577 1.60459 1.10276 1.20672 1.39495 1.23039 0.86087 0.97301 0.97738 1.22802 0.95424 0.99575 0.96164 1.22080 0.93079 0.97975 0.97277 1.23487 0.98876 0.98243 0.98322 1.23087 0.94194 1.00724 0.97986 1.22381 0.81503 0.94910 0.98785 1.46006 1.18496 1.63905 1.09777 1.20342 0.86232 0.77887 0.83692 1.90694 1.70946 1.49231 1.28330 1.23544 0.95771 1.02843 1.08347 1.85396 1.18448 1.79923 0.99612 1.22873 1.03095 1.46159 0.96278 0.90958 1.24982 0.98666 0.95453 0.94420 1.70014 1.36162 1.44874 0.99256 0.86177 0.82138 0.79140 0.78097 1.20269 1.20739 1.19709 1.23293 0.97088 0.97146 1.00030 0.90520 0.91412 0.91385 0.90811 0.89134 0.90866 0.94614 0.83836 0.88661 0.89174 0.90974 0.91486 0.89744 0.90643 0.89462 0.86803 0.76859 0.89264 0.89279 0.92185 0.89720 0.90825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.63 9.65 37.15 0.36 -0.27 16 2 C 0.09 0.41 3.96 -26.73 -0.11 0.31 16 3 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 4 F -0.22 -1.68 16.76 2.25 0.04 -1.65 16 5 C -0.15 -0.67 5.24 -26.73 -0.14 -0.81 16 6 C 0.06 0.32 5.45 -3.83 -0.02 0.30 16 7 N -0.68 -4.34 6.62 -105.69 -0.70 -5.04 16 8 C 0.07 0.47 4.18 -66.73 -0.28 0.19 16 9 C -0.10 -0.80 7.64 -26.28 -0.20 -1.00 16 10 C -0.10 -0.83 1.11 -154.72 -0.17 -1.00 16 11 C -0.15 -1.03 7.46 -26.28 -0.20 -1.22 16 12 C -0.12 -1.03 7.59 -26.29 -0.20 -1.23 16 13 C 0.13 1.52 4.24 -66.95 -0.28 1.24 16 14 N -0.73 -9.74 5.35 -52.86 -0.28 -10.03 16 15 C 0.53 9.99 7.85 -10.99 -0.09 9.90 16 16 O -0.52 -11.84 15.46 5.56 0.09 -11.76 16 17 C -0.15 -3.13 6.16 36.01 0.22 -2.91 16 18 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 19 C -0.54 -15.35 9.50 30.94 0.29 -15.05 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 23 Si 0.92 21.46 29.55 -169.99 -5.02 16.44 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C -0.14 -1.38 7.64 -26.29 -0.20 -1.58 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.38 8.14 -51.92 -0.42 -0.05 16 33 H 0.07 0.42 8.13 -51.93 -0.42 -0.01 16 34 H 0.04 0.24 7.94 -51.92 -0.41 -0.18 16 35 H 0.34 2.00 8.19 -39.29 -0.32 1.67 16 36 H 0.10 0.66 7.87 -51.93 -0.41 0.25 16 37 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.08 0.56 7.82 -51.93 -0.41 0.16 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 42 H 0.09 0.65 8.12 -51.93 -0.42 0.23 16 43 H 0.11 1.58 7.47 -51.93 -0.39 1.20 16 44 H 0.40 4.14 8.73 -40.82 -0.36 3.79 16 45 H 0.09 1.67 8.14 -51.92 -0.42 1.25 16 46 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 47 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 49 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 416.37 15.07 6.27 6.27 Total: -1.00 -34.27 416.37 -10.79 -45.06 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -8.60 Total: 1.23 kcal Atomic # 6 Polarization: -10.01 SS G_CDS: -1.11 Total: -11.12 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: -0.25 Total: -40.61 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 9 Polarization: -1.68 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.27 Total: 6.27 kcal Total: -34.27 -10.79 -45.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120666008.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.093 kcal (2) G-P(sol) polarization free energy of solvation -34.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds