Wall clock time and date at job start Wed Apr 1 2020 03:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08993 * 109.47578 * 2 1 4 4 F 1.39900 * 109.47235 * 239.99427 * 2 1 3 5 5 C 1.53002 * 109.47155 * 120.00203 * 2 1 3 6 6 C 1.53001 * 109.47435 * 185.00252 * 5 2 1 7 7 N 1.46894 * 109.47497 * 179.97438 * 6 5 2 8 8 C 1.46898 * 111.00259 * 179.97438 * 7 6 5 9 9 C 1.53952 * 113.58187 * 155.00002 * 8 7 6 10 10 C 1.52909 * 86.78355 * 139.33751 * 9 8 7 11 11 C 1.52914 * 88.04315 * 335.10152 * 10 9 8 12 12 C 1.52906 * 121.13590 * 100.82048 * 10 9 8 13 13 C 1.53947 * 86.78053 * 100.82014 * 12 10 9 14 14 N 1.46500 * 113.58000 * 139.33884 * 13 12 10 15 15 C 1.34779 * 120.00169 * 154.99479 * 14 13 12 16 16 O 1.21282 * 119.99922 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00037 * 180.02562 * 15 14 13 18 18 S 1.81000 * 109.46881 * 180.02562 * 17 15 14 19 19 C 1.76206 * 99.99929 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99720 * 359.97438 * 19 18 17 21 21 C 1.38796 * 119.99847 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00398 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99778 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47405 * 89.99756 * 23 21 19 25 25 H 1.48503 * 109.46936 * 210.00169 * 23 21 19 26 26 H 1.48506 * 109.47119 * 329.99794 * 23 21 19 27 27 C 1.52901 * 121.13483 * 209.38235 * 10 9 8 28 28 H 1.09004 * 109.47286 * 300.00043 * 1 2 3 29 29 H 1.08996 * 109.47163 * 59.99725 * 1 2 3 30 30 H 1.09003 * 109.47631 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.47728 * 64.99712 * 5 2 1 32 32 H 1.09008 * 109.47055 * 304.99613 * 5 2 1 33 33 H 1.08995 * 109.47103 * 59.99078 * 6 5 2 34 34 H 1.09008 * 109.46477 * 299.99715 * 6 5 2 35 35 H 1.00909 * 110.99893 * 56.03946 * 7 6 5 36 36 H 1.09000 * 112.87573 * 23.86038 * 8 7 6 37 37 H 1.09000 * 113.66174 * 24.86408 * 9 8 7 38 38 H 1.08997 * 113.66115 * 253.81358 * 9 8 7 39 39 H 1.08994 * 113.66145 * 139.37314 * 11 10 9 40 40 H 1.09000 * 113.66281 * 270.43068 * 11 10 9 41 41 H 1.08999 * 113.66138 * 346.34394 * 12 10 9 42 42 H 1.09000 * 113.66105 * 215.29114 * 12 10 9 43 43 H 1.09001 * 113.57904 * 270.05247 * 13 12 10 44 44 H 0.96996 * 119.99986 * 335.00076 * 14 13 12 45 45 H 1.09000 * 109.47247 * 60.00371 * 17 15 14 46 46 H 1.09001 * 109.47358 * 299.99798 * 17 15 14 47 47 H 0.96996 * 120.00393 * 180.02562 * 22 21 19 48 48 H 1.09004 * 113.66496 * 144.71378 * 27 10 9 49 49 H 1.09002 * 113.66688 * 13.65390 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 9 1.9963 -0.6596 -1.1422 5 6 2.0400 -0.7213 1.2492 6 6 3.5648 -0.6133 1.3138 7 7 4.0544 -1.3053 2.5135 8 6 5.5180 -1.2227 2.6084 9 6 6.0503 -1.3550 4.0469 10 6 7.1678 -2.2194 3.4621 11 6 6.2311 -2.5519 2.3001 12 6 8.5632 -1.6458 3.2136 13 6 8.9868 -2.3403 4.5206 14 7 10.3096 -2.9659 4.4497 15 6 11.0257 -3.1573 5.5754 16 8 10.5747 -2.8121 6.6470 17 6 12.3867 -3.8003 5.5024 18 16 13.0883 -3.9180 7.1668 19 6 14.6316 -4.6826 6.7948 20 1 14.8806 -4.9272 5.7728 21 6 15.5267 -4.9716 7.8155 22 7 15.2230 -4.6740 9.0612 23 14 17.1631 -5.7816 7.4211 24 1 18.1833 -4.7348 7.1593 25 1 17.5931 -6.6150 8.5725 26 1 17.0138 -6.6391 6.2178 27 6 7.8265 -3.3249 4.2878 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.7516 -1.7715 1.2057 32 1 1.6054 -0.2617 2.1370 33 1 3.8531 0.4369 1.3573 34 1 3.9994 -1.0729 0.4260 35 1 3.7449 -2.2656 2.5286 36 1 5.9303 -0.3710 2.0675 37 1 5.3801 -1.8983 4.7131 38 1 6.4013 -0.4146 4.4717 39 1 6.7267 -2.5675 1.3294 40 1 5.6118 -3.4315 2.4753 41 1 8.6041 -0.5577 3.2631 42 1 9.0504 -2.0494 2.3259 43 1 8.8606 -1.7173 5.4061 44 1 10.6701 -3.2422 3.5927 45 1 13.0408 -3.1961 4.8739 46 1 12.2942 -4.7993 5.0761 47 1 15.8487 -4.8756 9.7744 48 1 8.1068 -4.2005 3.7021 49 1 7.2790 -3.5783 5.1956 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001120666008.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:23 Heat of formation + Delta-G solvation = -85.581518 kcal Electronic energy + Delta-G solvation = -26299.528219 eV Core-core repulsion = 22301.691382 eV Total energy + Delta-G solvation = -3997.836837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.59047 -41.78130 -40.25354 -37.82682 -35.94841 -34.58901 -34.18956 -32.73362 -30.53582 -28.99192 -27.67087 -26.82410 -26.71752 -24.43604 -23.39723 -22.32610 -21.78783 -21.43048 -19.86538 -18.86910 -17.86014 -17.61032 -17.40423 -16.88133 -16.85298 -16.67385 -16.44608 -16.06652 -15.94508 -15.84230 -15.50346 -15.00062 -14.73371 -14.57703 -14.07622 -13.96597 -13.68749 -13.66276 -13.62529 -13.28767 -13.16641 -13.09818 -13.04950 -12.88939 -12.76583 -12.61806 -12.42184 -12.25177 -12.00416 -11.83926 -11.70515 -11.60339 -11.37650 -11.14303 -11.09772 -10.98013 -10.72488 -10.27466 -9.99154 -9.28753 -8.66856 -8.34629 -6.12933 1.27474 1.42543 1.47529 1.58003 1.61085 2.26773 2.33669 2.99603 3.04971 3.32330 3.43827 3.49609 3.62136 3.72878 3.80257 3.81421 3.87592 3.94448 3.97202 4.01136 4.17892 4.28833 4.31120 4.41781 4.46288 4.50378 4.51040 4.65960 4.72653 4.76520 4.86028 4.87230 4.87488 4.90877 4.98229 5.04746 5.06432 5.12295 5.22004 5.24672 5.30655 5.35737 5.41668 5.44301 5.62355 6.13598 6.19785 6.46298 6.54939 7.06646 7.27589 8.74732 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.052603 B = 0.001314 C = 0.001296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.157315 B =21305.684419 C =21603.815937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.082 3.918 3 H 0.095 0.905 4 F -0.235 7.235 5 C -0.139 4.139 6 C 0.058 3.942 7 N -0.684 5.684 8 C 0.075 3.925 9 C -0.106 4.106 10 C -0.095 4.095 11 C -0.140 4.140 12 C -0.105 4.105 13 C 0.114 3.886 14 N -0.702 5.702 15 C 0.533 3.467 16 O -0.568 6.568 17 C -0.130 4.130 18 S -0.153 6.153 19 C -0.547 4.547 20 H 0.083 0.917 21 C 0.014 3.986 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.258 1.258 27 C -0.135 4.135 28 H 0.090 0.910 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.074 0.926 34 H 0.027 0.973 35 H 0.346 0.654 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.087 0.913 44 H 0.416 0.584 45 H 0.110 0.890 46 H 0.109 0.891 47 H 0.271 0.729 48 H 0.093 0.907 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.726 8.564 -23.046 37.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.045 3.955 3 H 0.113 0.887 4 F -0.216 7.216 5 C -0.177 4.177 6 C -0.071 4.071 7 N -0.314 5.314 8 C -0.035 4.035 9 C -0.145 4.145 10 C -0.096 4.096 11 C -0.179 4.179 12 C -0.143 4.143 13 C 0.009 3.991 14 N -0.355 5.355 15 C 0.319 3.681 16 O -0.446 6.446 17 C -0.281 4.281 18 S 0.074 5.926 19 C -0.695 4.695 20 H 0.101 0.899 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.820 3.180 24 H -0.193 1.193 25 H -0.203 1.203 26 H -0.182 1.182 27 C -0.173 4.173 28 H 0.109 0.891 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.093 0.907 34 H 0.045 0.955 35 H 0.166 0.834 36 H 0.117 0.883 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.126 0.874 43 H 0.105 0.895 44 H 0.253 0.747 45 H 0.128 0.872 46 H 0.127 0.873 47 H 0.080 0.920 48 H 0.111 0.889 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -28.553 9.676 -20.729 36.587 hybrid contribution 1.996 -1.672 -1.860 3.200 sum -26.558 8.004 -22.589 35.772 Atomic orbital electron populations 1.22366 0.93213 1.03691 1.04307 1.21774 0.95751 0.96709 0.81257 0.88703 1.92785 1.90608 1.83860 1.54354 1.22148 0.95538 1.02040 0.97994 1.21966 0.94779 0.99496 0.90833 1.60435 1.10010 1.21050 1.39875 1.22956 0.86444 0.97483 0.96658 1.22827 0.95493 0.99231 0.96914 1.21993 0.93146 0.96910 0.97560 1.23438 0.98254 0.98340 0.97903 1.23044 0.93870 1.00964 0.96451 1.22591 0.80771 0.95886 0.99872 1.45779 1.18491 1.62252 1.08976 1.20122 0.85971 0.77680 0.84318 1.90683 1.71859 1.51638 1.30449 1.23389 0.96626 1.04680 1.03442 1.85589 1.19891 1.80397 1.06701 1.23212 1.03207 1.46154 0.96922 0.89915 1.26121 1.03004 0.95866 0.94051 1.70181 1.37846 1.46238 1.00566 0.84957 0.76517 0.78193 0.78326 1.19274 1.20277 1.18178 1.23281 0.96302 0.97735 1.00014 0.89092 0.91360 0.91745 0.91049 0.88426 0.90749 0.95466 0.83447 0.88324 0.89787 0.91512 0.90649 0.89380 0.89987 0.87433 0.89521 0.74653 0.87191 0.87275 0.91981 0.88855 0.92303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 9.65 71.98 0.69 -0.31 16 2 C 0.08 0.67 3.96 30.59 0.12 0.79 16 3 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 4 F -0.23 -3.48 16.76 44.97 0.75 -2.73 16 5 C -0.14 -1.08 5.24 30.60 0.16 -0.92 16 6 C 0.06 0.58 5.45 86.30 0.47 1.05 16 7 N -0.68 -7.66 6.62 -488.29 -3.23 -10.89 16 8 C 0.07 0.88 4.18 45.55 0.19 1.07 16 9 C -0.11 -1.56 7.64 30.89 0.24 -1.33 16 10 C -0.09 -1.35 1.11 -52.32 -0.06 -1.41 16 11 C -0.14 -1.57 7.46 30.89 0.23 -1.34 16 12 C -0.11 -1.53 7.59 30.88 0.23 -1.30 16 13 C 0.11 2.56 4.24 45.62 0.19 2.76 16 14 N -0.70 -17.72 5.35 -439.53 -2.35 -20.07 16 15 C 0.53 19.92 7.85 87.66 0.69 20.60 16 16 O -0.57 -26.85 15.46 -3.04 -0.05 -26.90 16 17 C -0.13 -5.19 6.16 71.24 0.44 -4.75 16 18 S -0.15 -8.58 20.57 -56.49 -1.16 -9.74 16 19 C -0.55 -31.44 9.50 67.95 0.65 -30.79 16 20 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 21 C 0.01 0.82 5.49 84.86 0.47 1.29 16 22 N -0.91 -56.37 13.22 21.65 0.29 -56.09 16 23 Si 1.00 43.68 29.55 68.60 2.03 45.71 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 26 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 27 C -0.13 -2.58 7.64 30.88 0.24 -2.34 16 28 H 0.09 0.24 8.14 -2.38 -0.02 0.23 16 29 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.59 8.14 -2.39 -0.02 0.58 16 32 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.07 0.72 8.13 -2.39 -0.02 0.71 16 34 H 0.03 0.32 7.94 -2.38 -0.02 0.30 16 35 H 0.35 3.49 8.19 -89.69 -0.73 2.75 16 36 H 0.10 1.13 7.87 -2.39 -0.02 1.11 16 37 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.09 0.96 7.82 -2.39 -0.02 0.95 16 41 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.19 8.12 -2.39 -0.02 1.17 16 43 H 0.09 2.49 7.47 -2.39 -0.02 2.47 16 44 H 0.42 7.44 8.73 -92.71 -0.81 6.63 16 45 H 0.11 3.92 8.14 -2.39 -0.02 3.91 16 46 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 47 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 48 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 49 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 Total: -1.00 -76.91 416.37 0.62 -76.29 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: -0.60 Total: 21.35 kcal Atomic # 6 Polarization: -21.87 SS G_CDS: 4.95 Total: -16.93 kcal Atomic # 7 Polarization: -81.75 SS G_CDS: -5.30 Total: -87.05 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.05 Total: -26.90 kcal Atomic # 9 Polarization: -3.48 SS G_CDS: 0.75 Total: -2.73 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.16 Total: -9.74 kcal Total: -76.91 0.62 -76.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001120666008.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.288 kcal (2) G-P(sol) polarization free energy of solvation -76.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds