Wall clock time and date at job start Wed Apr 1 2020 03:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47391 * 2 1 4 4 C 1.36734 * 127.13963 * 275.53394 * 3 2 1 5 5 C 1.50700 * 126.34441 * 359.97429 * 4 3 2 6 6 C 1.53003 * 109.47346 * 270.02266 * 5 4 3 7 7 C 1.53001 * 109.46871 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.47099 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99625 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00069 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99732 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99801 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46940 * 90.00353 * 12 10 8 14 14 H 1.48510 * 109.46810 * 209.99452 * 12 10 8 15 15 H 1.48492 * 109.47470 * 329.99884 * 12 10 8 16 16 N 1.30296 * 107.31081 * 180.02562 * 4 3 2 17 17 N 1.28532 * 110.04924 * 359.97438 * 16 4 3 18 18 C 1.31214 * 109.86153 * 0.02562 * 17 16 4 19 19 N 1.38581 * 126.47252 * 179.73650 * 18 17 16 20 20 C 1.46903 * 110.99701 * 107.09358 * 19 18 17 21 21 C 1.46898 * 110.99947 * 343.14232 * 19 18 17 22 22 C 1.52999 * 109.47381 * 189.99827 * 21 19 18 23 23 S 1.81395 * 109.47474 * 179.97438 * 22 21 19 24 24 C 1.81406 * 101.92177 * 180.02562 * 23 22 21 25 25 O 1.42098 * 108.57885 * 294.48842 * 23 22 21 26 26 O 1.42095 * 108.57823 * 65.51507 * 23 22 21 27 27 H 1.09003 * 109.46907 * 306.17899 * 1 2 3 28 28 H 1.08994 * 109.47104 * 66.17943 * 1 2 3 29 29 H 1.09002 * 109.46894 * 186.18511 * 1 2 3 30 30 H 1.09000 * 109.47044 * 239.99956 * 2 1 3 31 31 H 1.09002 * 109.47146 * 120.00205 * 2 1 3 32 32 H 1.09006 * 109.47098 * 30.02631 * 5 4 3 33 33 H 1.09005 * 109.47304 * 150.02178 * 5 4 3 34 34 H 1.08997 * 109.47106 * 299.99666 * 6 5 4 35 35 H 1.08998 * 109.46742 * 60.00347 * 6 5 4 36 36 H 1.08994 * 109.47823 * 300.00031 * 7 6 5 37 37 H 1.09004 * 109.46897 * 60.00226 * 7 6 5 38 38 H 0.97002 * 119.99536 * 180.02562 * 11 10 8 39 39 H 1.08996 * 109.46969 * 65.72654 * 20 19 18 40 40 H 1.09004 * 109.46957 * 185.71905 * 20 19 18 41 41 H 1.08996 * 109.47456 * 305.71882 * 20 19 18 42 42 H 1.09000 * 109.47459 * 309.99670 * 21 19 18 43 43 H 1.09004 * 109.47363 * 69.99772 * 21 19 18 44 44 H 1.09006 * 109.47351 * 300.00225 * 22 21 19 45 45 H 1.09004 * 109.46917 * 59.99671 * 22 21 19 46 46 H 1.08996 * 109.46858 * 59.99870 * 24 23 22 47 47 H 1.08995 * 109.47057 * 179.97438 * 24 23 22 48 48 H 1.08996 * 109.47284 * 299.99936 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1945 2.1945 -1.0849 5 6 1.9208 1.8369 -2.5231 6 6 3.1819 1.2371 -3.1484 7 6 2.9037 0.8735 -4.6083 8 6 4.1460 0.2833 -5.2244 9 1 5.0439 0.1778 -4.6337 10 6 4.1359 -0.1229 -6.5420 11 7 5.2202 -0.6374 -7.0798 12 14 2.5826 0.0591 -7.5635 13 1 2.5819 1.3854 -8.2314 14 1 2.5375 -1.0124 -8.5908 15 1 1.3937 -0.0512 -6.6806 16 7 2.6438 3.3357 -0.6450 17 7 2.7622 3.2991 0.6343 18 6 2.3921 2.1228 1.0827 19 7 2.3872 1.7097 2.4056 20 6 1.0162 1.6291 2.9268 21 6 3.2150 2.5943 3.2363 22 6 3.3892 1.9747 4.6244 23 16 4.4121 3.0666 5.6500 24 6 4.4844 2.1516 7.2147 25 8 5.7190 3.1164 5.0944 26 8 3.7035 4.2792 5.8664 27 1 -0.3633 0.6067 0.8295 28 1 -0.3633 0.4150 -0.9401 29 1 -0.3633 -1.0217 0.1107 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.1110 1.1086 -2.5686 33 1 1.6342 2.7337 -3.0723 34 1 3.9916 1.9654 -3.1029 35 1 3.4684 0.3402 -2.5992 36 1 2.0941 0.1451 -4.6535 37 1 2.6169 1.7701 -5.1577 38 1 5.2131 -0.9228 -8.0068 39 1 0.4738 0.8424 2.4023 40 1 1.0454 1.4018 3.9924 41 1 0.5120 2.5831 2.7724 42 1 4.1920 2.7214 2.7700 43 1 2.7283 3.5651 3.3303 44 1 2.4122 1.8476 5.0908 45 1 3.8760 1.0040 4.5304 46 1 4.9388 1.1757 7.0442 47 1 5.0829 2.7098 7.9347 48 1 3.4755 2.0194 7.6053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121693776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:38 Heat of formation + Delta-G solvation = 13.356888 kcal Electronic energy + Delta-G solvation = -28182.392580 eV Core-core repulsion = 24208.765995 eV Total energy + Delta-G solvation = -3973.626585 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.98799 -38.33740 -37.41477 -36.45020 -35.97839 -34.85040 -32.58253 -31.89204 -30.73922 -30.16289 -29.97312 -27.93401 -26.34875 -24.42656 -23.68112 -23.26688 -20.77650 -20.51431 -20.13467 -19.33547 -17.90218 -17.02520 -16.88746 -16.71053 -16.42305 -16.35610 -15.89691 -15.41276 -15.20141 -14.59397 -14.38382 -14.23044 -13.98414 -13.80918 -13.73877 -13.65968 -13.33887 -12.96411 -12.75489 -12.67006 -12.50843 -12.41040 -12.24135 -12.16191 -11.93012 -11.78802 -11.62962 -11.55930 -11.38208 -11.15833 -11.10171 -10.88146 -10.56917 -10.17859 -10.03730 -9.87396 -9.79132 -9.57766 -9.22181 -8.55240 -8.42947 -6.05136 -4.03657 -0.56093 1.74811 2.11808 2.23418 2.90879 3.07995 3.29817 3.37052 3.38645 3.46120 3.49642 3.98265 4.12159 4.25028 4.36619 4.43473 4.45678 4.47693 4.55403 4.67171 4.80067 4.84782 4.88909 5.00615 5.09203 5.09749 5.15160 5.23979 5.27977 5.28569 5.35541 5.47197 5.66845 5.70792 5.78658 5.90685 6.00334 6.21939 6.45352 6.47829 6.55444 6.80945 7.07301 7.24380 7.36705 7.76711 8.52564 8.83335 9.00041 9.56600 11.08352 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.002086 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.497727 B =13421.344577 C =14054.599161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.101 3.899 3 N -0.469 5.469 4 C 0.206 3.794 5 C -0.038 4.038 6 C -0.095 4.095 7 C -0.012 4.012 8 C -0.521 4.521 9 H 0.071 0.929 10 C 0.065 3.935 11 N -0.903 5.903 12 Si 0.881 3.119 13 H -0.276 1.276 14 H -0.288 1.288 15 H -0.266 1.266 16 N -0.286 5.286 17 N -0.316 5.316 18 C 0.332 3.668 19 N -0.448 5.448 20 C 0.013 3.987 21 C 0.083 3.917 22 C -0.618 4.618 23 S 2.426 3.574 24 C -0.655 4.655 25 O -0.930 6.930 26 O -0.935 6.935 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.100 0.900 32 H 0.078 0.922 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.016 0.984 37 H 0.015 0.985 38 H 0.263 0.737 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.045 0.955 42 H 0.104 0.896 43 H 0.073 0.927 44 H 0.134 0.866 45 H 0.144 0.856 46 H 0.130 0.870 47 H 0.131 0.869 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.341 -0.327 30.453 32.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.164 5.164 4 C -0.062 4.062 5 C -0.078 4.078 6 C -0.134 4.134 7 C -0.049 4.049 8 C -0.559 4.559 9 H 0.089 0.911 10 C -0.136 4.136 11 N -0.542 5.542 12 Si 0.708 3.292 13 H -0.202 1.202 14 H -0.215 1.215 15 H -0.190 1.190 16 N -0.125 5.125 17 N -0.161 5.161 18 C -0.024 4.024 19 N -0.172 5.172 20 C -0.134 4.134 21 C -0.045 4.045 22 C -0.746 4.746 23 S 2.606 3.394 24 C -0.804 4.804 25 O -0.927 6.927 26 O -0.932 6.932 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.096 0.904 33 H 0.116 0.884 34 H 0.083 0.917 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.034 0.966 38 H 0.073 0.927 39 H 0.098 0.902 40 H 0.104 0.896 41 H 0.063 0.937 42 H 0.122 0.878 43 H 0.092 0.908 44 H 0.153 0.847 45 H 0.163 0.837 46 H 0.149 0.851 47 H 0.149 0.851 48 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.192 1.337 30.117 31.823 hybrid contribution -1.841 -1.631 -0.288 2.476 sum -12.033 -0.294 29.829 32.166 Atomic orbital electron populations 1.22260 0.94048 1.03432 1.03260 1.21940 0.95481 0.79017 1.05766 1.46265 1.50479 1.13704 1.05918 1.25216 1.01196 0.87676 0.92077 1.20390 1.00819 1.02670 0.83926 1.21479 0.94519 0.99591 0.97831 1.19575 0.97778 0.96260 0.91334 1.21111 0.97592 1.40476 0.96700 0.91061 1.25045 0.96082 0.94661 0.97792 1.69920 1.27881 1.42502 1.13873 0.86764 0.84271 0.77980 0.80151 1.20203 1.21461 1.19044 1.74039 1.17471 1.18720 1.02286 1.74577 1.22454 1.14608 1.04457 1.22276 1.03896 0.88630 0.87639 1.58560 1.12829 1.49475 0.96381 1.22772 0.86793 1.02294 1.01537 1.21633 1.00045 0.93813 0.89050 1.30578 1.16679 1.17450 1.09923 1.07763 0.76316 0.77100 0.78251 1.30268 1.11668 1.15907 1.22583 1.93642 1.36248 1.86170 1.76682 1.93622 1.74708 1.39778 1.85064 0.92080 0.91336 0.90034 0.87801 0.88212 0.90397 0.88430 0.91742 0.92945 0.96587 0.96624 0.92728 0.90156 0.89557 0.93663 0.87756 0.90830 0.84737 0.83748 0.85147 0.85052 0.85322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.00 37.16 0.37 -0.88 16 2 C 0.10 0.95 6.11 -4.04 -0.02 0.93 16 3 N -0.47 -6.26 2.81 -114.09 -0.32 -6.58 16 4 C 0.21 3.31 7.32 -154.02 -1.13 2.18 16 5 C -0.04 -0.59 5.53 -27.88 -0.15 -0.75 16 6 C -0.10 -1.84 5.14 -26.73 -0.14 -1.97 16 7 C -0.01 -0.28 4.04 -27.88 -0.11 -0.39 16 8 C -0.52 -14.70 9.66 -34.44 -0.33 -15.04 16 9 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 10 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 11 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 12 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.27 -6.05 6.54 56.52 0.37 -5.68 16 16 N -0.29 -5.34 12.18 32.99 0.40 -4.94 16 17 N -0.32 -5.51 11.42 30.32 0.35 -5.16 16 18 C 0.33 4.66 6.88 -318.87 -2.19 2.46 16 19 N -0.45 -4.53 4.74 -182.38 -0.86 -5.39 16 20 C 0.01 0.09 9.42 60.07 0.57 0.66 16 21 C 0.08 0.78 4.38 -3.83 -0.02 0.77 16 22 C -0.62 -2.76 5.75 37.16 0.21 -2.55 16 23 S 2.43 14.14 5.36 -107.50 -0.58 13.57 16 24 C -0.65 -1.14 10.62 101.05 1.07 -0.07 16 25 O -0.93 -9.77 18.10 -57.83 -1.05 -10.82 16 26 O -0.93 -9.11 18.10 -57.83 -1.05 -10.16 16 27 H 0.06 0.43 6.08 -51.93 -0.32 0.11 16 28 H 0.07 0.56 7.78 -51.93 -0.40 0.16 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.10 1.02 8.07 -51.93 -0.42 0.60 16 31 H 0.10 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.08 1.02 7.61 -51.93 -0.40 0.63 16 33 H 0.10 1.49 8.14 -51.93 -0.42 1.06 16 34 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.02 0.35 7.20 -51.93 -0.37 -0.02 16 37 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 38 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 39 H 0.08 0.49 5.27 -51.93 -0.27 0.22 16 40 H 0.09 0.33 6.09 -51.93 -0.32 0.01 16 41 H 0.04 0.36 8.11 -51.93 -0.42 -0.06 16 42 H 0.10 1.18 8.00 -51.93 -0.42 0.76 16 43 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 44 H 0.13 0.19 6.37 -51.92 -0.33 -0.14 16 45 H 0.14 0.38 8.14 -51.92 -0.42 -0.05 16 46 H 0.13 0.02 8.14 -51.93 -0.42 -0.40 16 47 H 0.13 0.22 8.14 -51.93 -0.42 -0.21 16 48 H 0.13 -0.04 8.14 -51.93 -0.42 -0.46 16 LS Contribution 401.00 15.07 6.04 6.04 Total: -1.00 -40.96 401.00 -10.80 -51.75 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -7.87 Total: -5.10 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -1.97 Total: -12.85 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.34 Total: -49.11 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -2.09 Total: -20.98 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 16 Polarization: 14.14 SS G_CDS: -0.58 Total: 13.57 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -40.96 -10.80 -51.75 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121693776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.111 kcal (2) G-P(sol) polarization free energy of solvation -40.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds