Wall clock time and date at job start Wed Apr 1 2020 03:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47391 * 2 1 4 4 C 1.36734 * 127.13963 * 275.53394 * 3 2 1 5 5 C 1.50700 * 126.34441 * 359.97429 * 4 3 2 6 6 C 1.53003 * 109.47346 * 270.02266 * 5 4 3 7 7 C 1.53001 * 109.46871 * 179.97438 * 6 5 4 8 8 C 1.50707 * 109.47099 * 179.97438 * 7 6 5 9 9 H 1.07997 * 119.99625 * 0.02562 * 8 7 6 10 10 C 1.37876 * 120.00069 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99732 * 179.97438 * 10 8 7 12 12 Si 1.86797 * 119.99801 * 0.02562 * 10 8 7 13 13 H 1.48500 * 109.46940 * 90.00353 * 12 10 8 14 14 H 1.48510 * 109.46810 * 209.99452 * 12 10 8 15 15 H 1.48492 * 109.47470 * 329.99884 * 12 10 8 16 16 N 1.30296 * 107.31081 * 180.02562 * 4 3 2 17 17 N 1.28532 * 110.04924 * 359.97438 * 16 4 3 18 18 C 1.31214 * 109.86153 * 0.02562 * 17 16 4 19 19 N 1.38581 * 126.47252 * 179.73650 * 18 17 16 20 20 C 1.46903 * 110.99701 * 107.09358 * 19 18 17 21 21 C 1.46898 * 110.99947 * 343.14232 * 19 18 17 22 22 C 1.52999 * 109.47381 * 189.99827 * 21 19 18 23 23 S 1.81395 * 109.47474 * 179.97438 * 22 21 19 24 24 C 1.81406 * 101.92177 * 180.02562 * 23 22 21 25 25 O 1.42098 * 108.57885 * 294.48842 * 23 22 21 26 26 O 1.42095 * 108.57823 * 65.51507 * 23 22 21 27 27 H 1.09003 * 109.46907 * 306.17899 * 1 2 3 28 28 H 1.08994 * 109.47104 * 66.17943 * 1 2 3 29 29 H 1.09002 * 109.46894 * 186.18511 * 1 2 3 30 30 H 1.09000 * 109.47044 * 239.99956 * 2 1 3 31 31 H 1.09002 * 109.47146 * 120.00205 * 2 1 3 32 32 H 1.09006 * 109.47098 * 30.02631 * 5 4 3 33 33 H 1.09005 * 109.47304 * 150.02178 * 5 4 3 34 34 H 1.08997 * 109.47106 * 299.99666 * 6 5 4 35 35 H 1.08998 * 109.46742 * 60.00347 * 6 5 4 36 36 H 1.08994 * 109.47823 * 300.00031 * 7 6 5 37 37 H 1.09004 * 109.46897 * 60.00226 * 7 6 5 38 38 H 0.97002 * 119.99536 * 180.02562 * 11 10 8 39 39 H 1.08996 * 109.46969 * 65.72654 * 20 19 18 40 40 H 1.09004 * 109.46957 * 185.71905 * 20 19 18 41 41 H 1.08996 * 109.47456 * 305.71882 * 20 19 18 42 42 H 1.09000 * 109.47459 * 309.99670 * 21 19 18 43 43 H 1.09004 * 109.47363 * 69.99772 * 21 19 18 44 44 H 1.09006 * 109.47351 * 300.00225 * 22 21 19 45 45 H 1.09004 * 109.46917 * 59.99671 * 22 21 19 46 46 H 1.08996 * 109.46858 * 59.99870 * 24 23 22 47 47 H 1.08995 * 109.47057 * 179.97438 * 24 23 22 48 48 H 1.08996 * 109.47284 * 299.99936 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1945 2.1945 -1.0849 5 6 1.9208 1.8369 -2.5231 6 6 3.1819 1.2371 -3.1484 7 6 2.9037 0.8735 -4.6083 8 6 4.1460 0.2833 -5.2244 9 1 5.0439 0.1778 -4.6337 10 6 4.1359 -0.1229 -6.5420 11 7 5.2202 -0.6374 -7.0798 12 14 2.5826 0.0591 -7.5635 13 1 2.5819 1.3854 -8.2314 14 1 2.5375 -1.0124 -8.5908 15 1 1.3937 -0.0512 -6.6806 16 7 2.6438 3.3357 -0.6450 17 7 2.7622 3.2991 0.6343 18 6 2.3921 2.1228 1.0827 19 7 2.3872 1.7097 2.4056 20 6 1.0162 1.6291 2.9268 21 6 3.2150 2.5943 3.2363 22 6 3.3892 1.9747 4.6244 23 16 4.4121 3.0666 5.6500 24 6 4.4844 2.1516 7.2147 25 8 5.7190 3.1164 5.0944 26 8 3.7035 4.2792 5.8664 27 1 -0.3633 0.6067 0.8295 28 1 -0.3633 0.4150 -0.9401 29 1 -0.3633 -1.0217 0.1107 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 1.1110 1.1086 -2.5686 33 1 1.6342 2.7337 -3.0723 34 1 3.9916 1.9654 -3.1029 35 1 3.4684 0.3402 -2.5992 36 1 2.0941 0.1451 -4.6535 37 1 2.6169 1.7701 -5.1577 38 1 5.2131 -0.9228 -8.0068 39 1 0.4738 0.8424 2.4023 40 1 1.0454 1.4018 3.9924 41 1 0.5120 2.5831 2.7724 42 1 4.1920 2.7214 2.7700 43 1 2.7283 3.5651 3.3303 44 1 2.4122 1.8476 5.0908 45 1 3.8760 1.0040 4.5304 46 1 4.9388 1.1757 7.0442 47 1 5.0829 2.7098 7.9347 48 1 3.4755 2.0194 7.6053 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121693776.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:39:37 Heat of formation + Delta-G solvation = -17.064375 kcal Electronic energy + Delta-G solvation = -28183.711745 eV Core-core repulsion = 24208.765995 eV Total energy + Delta-G solvation = -3974.945749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.167 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.11625 -39.13238 -38.01375 -37.08619 -37.04334 -36.32366 -34.45215 -32.74548 -31.67567 -31.25165 -30.32578 -29.25997 -27.28643 -25.54957 -24.88539 -24.22290 -22.16344 -21.63716 -21.44720 -19.83728 -18.95045 -18.58016 -17.72226 -17.68343 -17.11336 -16.98166 -16.69728 -16.44603 -16.11355 -15.92772 -15.68837 -15.25814 -14.91267 -14.75772 -14.49964 -14.13301 -13.99810 -13.87353 -13.87227 -13.61836 -13.44428 -13.30305 -13.13418 -13.03870 -12.82915 -12.80702 -12.59479 -12.49000 -12.42378 -12.30041 -12.04144 -11.83393 -11.75194 -11.63731 -11.55287 -11.40788 -11.34970 -11.18084 -10.74503 -10.69247 -9.52995 -8.27045 -6.32228 -0.97776 0.66900 1.15361 1.40219 1.42237 1.53881 1.70393 1.87200 2.39310 2.44748 2.83752 3.08649 3.10834 3.31653 3.45329 3.61057 3.70385 3.81821 3.91241 4.01113 4.15234 4.22280 4.24024 4.27748 4.29393 4.36027 4.36729 4.45809 4.47069 4.55690 4.63028 4.72259 4.80731 4.89116 4.91206 4.96915 5.02587 5.04196 5.09316 5.22701 5.40130 5.44971 5.50479 5.58337 5.67954 6.08826 6.29834 6.76079 7.32178 7.65082 8.90168 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.019233 B = 0.002086 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1455.497727 B =13421.344577 C =14054.599161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.091 3.909 3 N -0.465 5.465 4 C 0.197 3.803 5 C -0.025 4.025 6 C -0.084 4.084 7 C -0.008 4.008 8 C -0.535 4.535 9 H 0.023 0.977 10 C -0.002 4.002 11 N -0.955 5.955 12 Si 0.956 3.044 13 H -0.271 1.271 14 H -0.286 1.286 15 H -0.233 1.233 16 N -0.330 5.330 17 N -0.363 5.363 18 C 0.344 3.656 19 N -0.440 5.440 20 C 0.006 3.994 21 C 0.071 3.929 22 C -0.599 4.599 23 S 2.415 3.585 24 C -0.625 4.625 25 O -0.993 6.993 26 O -0.987 6.987 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.108 0.892 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.034 0.966 35 H 0.049 0.951 36 H 0.037 0.963 37 H 0.023 0.977 38 H 0.266 0.734 39 H 0.094 0.906 40 H 0.127 0.873 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.060 0.940 44 H 0.176 0.824 45 H 0.172 0.828 46 H 0.157 0.843 47 H 0.136 0.864 48 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.218 -2.710 32.815 36.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.030 4.030 3 N -0.159 5.159 4 C -0.073 4.073 5 C -0.064 4.064 6 C -0.123 4.123 7 C -0.045 4.045 8 C -0.573 4.573 9 H 0.041 0.959 10 C -0.198 4.198 11 N -0.596 5.596 12 Si 0.779 3.221 13 H -0.196 1.196 14 H -0.212 1.212 15 H -0.155 1.155 16 N -0.168 5.168 17 N -0.207 5.207 18 C -0.014 4.014 19 N -0.165 5.165 20 C -0.140 4.140 21 C -0.057 4.057 22 C -0.729 4.729 23 S 2.602 3.398 24 C -0.779 4.779 25 O -0.990 6.990 26 O -0.984 6.984 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.127 0.873 30 H 0.119 0.881 31 H 0.137 0.863 32 H 0.129 0.871 33 H 0.119 0.881 34 H 0.053 0.947 35 H 0.068 0.932 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.145 0.855 41 H 0.051 0.949 42 H 0.091 0.909 43 H 0.078 0.922 44 H 0.194 0.806 45 H 0.190 0.810 46 H 0.175 0.825 47 H 0.155 0.845 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.078 -1.016 32.484 35.418 hybrid contribution -0.531 -0.997 -0.856 1.417 sum -14.610 -2.012 31.628 34.898 Atomic orbital electron populations 1.22246 0.91887 1.05157 1.03012 1.22328 0.97233 0.76825 1.06582 1.46466 1.49891 1.14693 1.04811 1.25177 1.01473 0.87791 0.92827 1.20221 0.99390 1.03389 0.83402 1.21233 0.95749 0.98929 0.96342 1.19518 0.95605 0.96532 0.92882 1.21492 0.98227 1.40699 0.96861 0.95900 1.26133 1.00220 0.94116 0.99316 1.70097 1.30864 1.44152 1.14508 0.85571 0.80147 0.78015 0.78368 1.19595 1.21210 1.15539 1.73916 1.18898 1.20755 1.03271 1.74473 1.24934 1.17081 1.04241 1.22761 1.01427 0.87823 0.89377 1.58840 1.14733 1.48387 0.94507 1.23023 0.84604 1.02221 1.04111 1.21676 0.98359 0.94159 0.91523 1.30429 1.18788 1.17351 1.06293 1.07616 0.74870 0.77372 0.79911 1.30012 1.14341 1.15798 1.17723 1.93568 1.39144 1.87401 1.78926 1.93557 1.75090 1.43560 1.86159 0.91676 0.92163 0.87326 0.88132 0.86327 0.87107 0.88089 0.94687 0.93189 0.94433 0.95821 0.92562 0.88727 0.85500 0.94916 0.90882 0.92199 0.80600 0.81038 0.82495 0.84524 0.81977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.80 10.00 71.98 0.72 -1.08 16 2 C 0.09 1.48 6.11 86.38 0.53 2.01 16 3 N -0.46 -11.98 2.81 -514.86 -1.45 -13.42 16 4 C 0.20 6.33 7.32 137.64 1.01 7.34 16 5 C -0.02 -0.73 5.53 29.85 0.16 -0.57 16 6 C -0.08 -3.24 5.14 30.60 0.16 -3.09 16 7 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 8 C -0.53 -30.99 9.66 25.60 0.25 -30.74 16 9 H 0.02 1.49 7.99 -2.91 -0.02 1.46 16 10 C 0.00 -0.10 5.47 84.65 0.46 0.36 16 11 N -0.96 -60.65 13.96 21.45 0.30 -60.35 16 12 Si 0.96 43.26 27.47 68.60 1.88 45.15 16 13 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 14 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.23 -9.23 6.54 99.48 0.65 -8.58 16 16 N -0.33 -12.83 12.18 -49.54 -0.60 -13.43 16 17 N -0.36 -13.28 11.42 -58.00 -0.66 -13.94 16 18 C 0.34 9.61 6.88 260.11 1.79 11.40 16 19 N -0.44 -8.21 4.74 -730.92 -3.47 -11.68 16 20 C 0.01 0.07 9.42 127.69 1.20 1.27 16 21 C 0.07 1.34 4.38 86.30 0.38 1.72 16 22 C -0.60 -3.82 5.75 71.98 0.41 -3.41 16 23 S 2.42 26.97 5.36 -56.49 -0.30 26.67 16 24 C -0.62 0.29 10.62 113.37 1.20 1.49 16 25 O -0.99 -22.41 18.10 -127.37 -2.30 -24.71 16 26 O -0.99 -19.95 18.10 -127.37 -2.31 -22.26 16 27 H 0.06 0.67 6.08 -2.39 -0.01 0.66 16 28 H 0.06 0.78 7.78 -2.39 -0.02 0.77 16 29 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 30 H 0.10 1.74 8.07 -2.39 -0.02 1.72 16 31 H 0.12 1.48 8.10 -2.39 -0.02 1.46 16 32 H 0.11 2.56 7.61 -2.38 -0.02 2.54 16 33 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 34 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.04 1.54 7.20 -2.39 -0.02 1.52 16 37 H 0.02 1.03 7.57 -2.39 -0.02 1.01 16 38 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 39 H 0.09 0.76 5.27 -2.39 -0.01 0.75 16 40 H 0.13 0.30 6.09 -2.38 -0.01 0.29 16 41 H 0.03 0.46 8.11 -2.39 -0.02 0.44 16 42 H 0.07 1.82 8.00 -2.39 -0.02 1.80 16 43 H 0.06 1.27 8.12 -2.39 -0.02 1.25 16 44 H 0.18 -0.39 6.37 -2.39 -0.02 -0.40 16 45 H 0.17 0.23 8.14 -2.39 -0.02 0.21 16 46 H 0.16 -0.76 8.14 -2.39 -0.02 -0.78 16 47 H 0.14 0.00 8.14 -2.39 -0.02 -0.02 16 48 H 0.16 -1.03 8.14 -2.39 -0.02 -1.05 16 Total: -1.00 -98.28 401.00 0.38 -97.90 By element: Atomic # 1 Polarization: 2.71 SS G_CDS: 0.89 Total: 3.60 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 8.40 Total: -13.52 kcal Atomic # 7 Polarization: -106.94 SS G_CDS: -5.88 Total: -112.82 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -4.61 Total: -46.97 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.15 kcal Atomic # 16 Polarization: 26.97 SS G_CDS: -0.30 Total: 26.67 kcal Total: -98.28 0.38 -97.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121693776.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.836 kcal (2) G-P(sol) polarization free energy of solvation -98.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds