Wall clock time and date at job start Wed Apr 1 2020 04:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99943 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47043 * 299.99844 * 3 2 1 6 6 H 1.48503 * 109.47061 * 59.99506 * 3 2 1 7 7 C 1.38805 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00286 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00250 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46974 * 179.97438 * 10 9 7 12 12 N 1.30964 * 126.61016 * 270.03635 * 11 10 9 13 13 N 1.29038 * 109.70964 * 180.02562 * 12 11 10 14 14 C 1.29893 * 109.21929 * 0.06979 * 13 12 11 15 15 N 1.34601 * 107.62310 * 359.78061 * 14 13 12 16 16 C 1.47496 * 125.04200 * 180.49698 * 15 14 13 17 17 C 1.53633 * 107.08453 * 294.03099 * 16 15 14 18 18 C 1.50870 * 111.12195 * 80.32925 * 17 16 15 19 19 H 1.08995 * 108.02862 * 49.15466 * 18 17 16 20 20 N 1.46503 * 108.02483 * 165.57026 * 18 17 16 21 21 C 1.34779 * 119.99553 * 204.99884 * 20 18 17 22 22 O 1.21699 * 120.00236 * 0.02562 * 21 20 18 23 23 C 1.46672 * 119.99931 * 179.97438 * 21 20 18 24 24 C 1.37874 * 126.23465 * 179.68875 * 23 21 20 25 25 C 1.39842 * 107.08651 * 179.85234 * 24 23 21 26 26 C 1.35452 * 107.86182 * 0.41542 * 25 24 23 27 27 N 1.35536 * 108.87511 * 359.74737 * 26 25 24 28 28 H 0.96991 * 125.67902 * 180.02562 * 27 26 25 29 29 C 1.50835 * 116.69168 * 287.45077 * 18 17 16 30 30 C 1.51888 * 127.81060 * 179.78937 * 14 13 12 31 31 H 0.96997 * 120.00431 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99698 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.47315 * 59.99002 * 10 9 7 34 34 H 1.09003 * 109.46381 * 299.99563 * 10 9 7 35 35 H 1.09004 * 109.93003 * 53.42681 * 16 15 14 36 36 H 1.09001 * 109.93306 * 174.55329 * 16 15 14 37 37 H 1.08993 * 109.15000 * 200.75305 * 17 16 15 38 38 H 1.09002 * 109.14970 * 319.96207 * 17 16 15 39 39 H 0.96994 * 120.00343 * 24.99396 * 20 18 17 40 40 H 1.07999 * 126.45803 * 0.02562 * 24 23 21 41 41 H 1.07998 * 126.07042 * 180.16414 * 25 24 23 42 42 H 1.08001 * 125.56581 * 179.72056 * 26 25 24 43 43 H 1.08995 * 109.02168 * 311.95117 * 29 18 17 44 44 H 1.09007 * 109.24655 * 192.77475 * 29 18 17 45 45 H 1.09002 * 109.96767 * 4.41933 * 30 14 13 46 46 H 1.09002 * 109.97004 * 125.64001 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0788 -4.8022 0.0021 12 7 0.5703 -5.3947 1.0535 13 7 -0.2313 -6.3339 0.6787 14 6 -0.2629 -6.3764 -0.6191 15 7 0.5565 -5.4125 -1.0786 16 6 0.7997 -5.1154 -2.5027 17 6 1.5188 -6.3339 -3.1015 18 6 0.5411 -7.4351 -3.4295 19 1 -0.2814 -6.9983 -3.9957 20 7 1.2204 -8.4008 -4.2969 21 6 0.5024 -9.1788 -5.1311 22 8 -0.7100 -9.0787 -5.1641 23 6 1.1824 -10.1452 -5.9999 24 6 0.5781 -11.0045 -6.8928 25 6 1.5959 -11.7396 -7.5087 26 6 2.7772 -11.3322 -6.9860 27 7 2.5398 -10.3637 -6.0680 28 1 3.2141 -9.9013 -5.5463 29 6 -0.0474 -8.1884 -2.2628 30 6 -1.0615 -7.3210 -1.5006 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6842 -3.7141 0.8921 34 1 2.6853 -3.7149 -0.8879 35 1 -0.1484 -4.9542 -3.0158 36 1 1.4275 -4.2292 -2.5955 37 1 2.0360 -6.0319 -4.0121 38 1 2.2486 -6.7071 -2.3830 39 1 2.1867 -8.4802 -4.2710 40 1 -0.4814 -11.0915 -7.0830 41 1 1.4633 -12.5003 -8.2638 42 1 3.7497 -11.7166 -7.2563 43 1 0.7559 -8.4787 -1.5857 44 1 -0.5472 -9.0851 -2.6293 45 1 -1.7026 -7.9520 -0.8851 46 1 -1.6669 -6.7505 -2.2050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127939164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:43 Heat of formation + Delta-G solvation = 105.256455 kcal Electronic energy + Delta-G solvation = -29489.949452 eV Core-core repulsion = 25417.156731 eV Total energy + Delta-G solvation = -4072.792720 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.03445 -41.72152 -39.91827 -37.54567 -35.23325 -34.67436 -33.54103 -31.80260 -31.50597 -31.20381 -29.71994 -29.25572 -26.48237 -25.84404 -24.30510 -23.16704 -22.90074 -21.46567 -21.00507 -20.61491 -20.50695 -20.04782 -19.29521 -17.50055 -17.11294 -16.60416 -16.26034 -15.80513 -15.58245 -14.97078 -14.79620 -14.69405 -14.54804 -14.13797 -14.05387 -13.95226 -13.60451 -13.33184 -13.10492 -12.97642 -12.83607 -12.72703 -12.58197 -12.38535 -11.98125 -11.78607 -11.60896 -11.20227 -11.08668 -10.94315 -10.90684 -10.51052 -10.16572 -9.97161 -9.96101 -9.86647 -9.63796 -9.47581 -9.03556 -8.72629 -8.68650 -7.10080 -5.86649 -3.19144 1.02782 2.11594 2.30784 2.53826 2.63921 2.67836 3.00532 3.21049 3.37413 3.43229 3.45712 4.03365 4.31166 4.32584 4.40990 4.49320 4.51471 4.58387 4.73177 4.83879 4.90140 4.90286 4.98573 5.03966 5.08462 5.25786 5.30322 5.36756 5.49085 5.60262 5.61413 5.67483 5.74763 5.75460 5.83010 5.92922 5.95866 6.15955 6.22628 6.26363 6.44671 6.51079 6.55408 6.82918 7.03014 7.13261 7.58556 7.73487 8.28395 9.11169 9.41080 9.91705 10.27873 11.35405 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.002187 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.175910 B =12799.845650 C =13682.137479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.009 4.009 3 Si 0.912 3.088 4 H -0.279 1.279 5 H -0.291 1.291 6 H -0.290 1.290 7 C -0.247 4.247 8 H 0.075 0.925 9 N -0.724 5.724 10 C 0.237 3.763 11 C 0.193 3.807 12 N -0.293 5.293 13 N -0.296 5.296 14 C 0.159 3.841 15 N -0.463 5.463 16 C 0.111 3.889 17 C -0.143 4.143 18 C 0.147 3.853 19 H 0.089 0.911 20 N -0.732 5.732 21 C 0.590 3.410 22 O -0.523 6.523 23 C -0.060 4.060 24 C -0.104 4.104 25 C -0.212 4.212 26 C 0.024 3.976 27 N -0.541 5.541 28 H 0.415 0.585 29 C -0.126 4.126 30 C -0.023 4.023 31 H 0.257 0.743 32 H 0.387 0.613 33 H 0.057 0.943 34 H 0.036 0.964 35 H 0.098 0.902 36 H 0.118 0.882 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.393 0.607 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.171 0.829 43 H 0.069 0.931 44 H 0.086 0.914 45 H 0.105 0.895 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.523 -23.872 -16.908 29.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.206 4.206 3 Si 0.742 3.258 4 H -0.204 1.204 5 H -0.218 1.218 6 H -0.217 1.217 7 C -0.378 4.378 8 H 0.093 0.907 9 N -0.370 5.370 10 C 0.107 3.893 11 C -0.075 4.075 12 N -0.133 5.133 13 N -0.136 5.136 14 C -0.109 4.109 15 N -0.154 5.154 16 C -0.013 4.013 17 C -0.181 4.181 18 C 0.043 3.957 19 H 0.107 0.893 20 N -0.383 5.383 21 C 0.377 3.623 22 O -0.398 6.398 23 C -0.172 4.172 24 C -0.131 4.131 25 C -0.237 4.237 26 C -0.112 4.112 27 N -0.138 5.138 28 H 0.252 0.748 29 C -0.165 4.165 30 C -0.063 4.063 31 H 0.067 0.933 32 H 0.221 0.779 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.117 0.883 36 H 0.136 0.864 37 H 0.114 0.886 38 H 0.098 0.902 39 H 0.226 0.774 40 H 0.166 0.834 41 H 0.162 0.838 42 H 0.189 0.811 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.123 0.877 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 5.563 -23.882 -15.360 28.935 hybrid contribution 1.266 1.421 -1.071 2.184 sum 6.830 -22.461 -16.431 28.655 Atomic orbital electron populations 1.69689 1.05220 1.25859 1.56707 1.24798 0.95549 0.97880 1.02324 0.86064 0.78734 0.83729 0.77264 1.20407 1.21796 1.21677 1.19215 0.91109 0.83473 1.44004 0.90691 1.42308 1.06041 0.98959 1.89736 1.19050 0.89434 0.80668 1.00130 1.25252 1.00845 0.99242 0.82142 1.74578 1.09204 1.05662 1.23882 1.74198 1.16082 1.15508 1.07771 1.24633 0.98067 0.95073 0.93121 1.46039 1.34349 1.26437 1.08563 1.22286 1.03018 0.98778 0.77169 1.21928 0.98687 0.94687 1.02830 1.20386 0.95646 0.88234 0.91450 0.89337 1.46140 1.10117 1.40398 1.41601 1.17071 0.86787 0.79560 0.78833 1.90872 1.12760 1.68072 1.68127 1.20450 0.82857 1.06367 1.07542 1.21382 0.99879 0.95710 0.96127 1.20951 0.91720 1.05370 1.05633 1.22081 1.00453 0.94077 0.94621 1.42038 1.06920 1.31619 1.33174 0.74751 1.21674 0.99140 0.99298 0.96421 1.20351 0.95431 0.94614 0.95902 0.93328 0.77914 0.92589 0.94630 0.88329 0.86397 0.88637 0.90197 0.77374 0.83388 0.83802 0.81128 0.91275 0.89533 0.87694 0.89292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.78 13.06 55.49 0.72 -27.06 16 2 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 3 Si 0.91 21.80 29.55 -169.99 -5.02 16.78 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.66 9.99 -15.06 -0.15 -6.81 16 8 H 0.08 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.72 -18.03 5.59 -61.08 -0.34 -18.37 16 10 C 0.24 4.70 6.48 -5.19 -0.03 4.66 16 11 C 0.19 3.66 7.45 -155.39 -1.16 2.50 16 12 N -0.29 -6.27 12.24 32.71 0.40 -5.87 16 13 N -0.30 -5.78 12.23 32.85 0.40 -5.38 16 14 C 0.16 2.46 7.03 -155.74 -1.10 1.37 16 15 N -0.46 -7.00 2.72 -109.59 -0.30 -7.30 16 16 C 0.11 1.21 6.47 -3.17 -0.02 1.19 16 17 C -0.14 -1.09 5.05 -27.47 -0.14 -1.23 16 18 C 0.15 1.20 1.90 -70.08 -0.13 1.07 16 19 H 0.09 0.83 7.13 -51.93 -0.37 0.46 16 20 N -0.73 -5.02 4.99 -57.23 -0.29 -5.31 16 21 C 0.59 5.61 7.39 -12.85 -0.10 5.51 16 22 O -0.52 -6.86 15.99 5.19 0.08 -6.78 16 23 C -0.06 -0.48 7.06 -81.98 -0.58 -1.06 16 24 C -0.10 -0.88 10.65 -39.12 -0.42 -1.30 16 25 C -0.21 -1.34 10.81 -39.98 -0.43 -1.78 16 26 C 0.02 0.11 11.89 -16.91 -0.20 -0.09 16 27 N -0.54 -2.61 5.99 -9.39 -0.06 -2.67 16 28 H 0.42 0.76 8.19 -40.82 -0.33 0.43 16 29 C -0.13 -1.19 5.09 -27.47 -0.14 -1.33 16 30 C -0.02 -0.25 6.01 -26.95 -0.16 -0.41 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 32 H 0.39 10.59 7.66 -40.82 -0.31 10.28 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.04 0.63 7.46 -51.93 -0.39 0.24 16 35 H 0.10 0.99 7.87 -51.93 -0.41 0.58 16 36 H 0.12 1.36 7.16 -51.93 -0.37 0.99 16 37 H 0.10 0.53 8.12 -51.93 -0.42 0.11 16 38 H 0.08 0.65 8.08 -51.93 -0.42 0.23 16 39 H 0.39 1.59 7.67 -40.82 -0.31 1.28 16 40 H 0.15 1.25 8.06 -52.49 -0.42 0.82 16 41 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 42 H 0.17 0.23 8.06 -52.49 -0.42 -0.19 16 43 H 0.07 0.70 7.92 -51.93 -0.41 0.28 16 44 H 0.09 0.86 7.22 -51.93 -0.37 0.48 16 45 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 46 H 0.09 0.89 7.90 -51.93 -0.41 0.48 16 LS Contribution 381.44 15.07 5.75 5.75 Total: -1.00 -37.06 381.44 -9.69 -46.76 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -6.20 Total: 7.49 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -4.85 Total: 1.96 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: 0.55 Total: -71.95 kcal Atomic # 8 Polarization: -6.86 SS G_CDS: 0.08 Total: -6.78 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -37.06 -9.69 -46.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127939164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.012 kcal (2) G-P(sol) polarization free energy of solvation -37.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds