Wall clock time and date at job start Wed Apr 1 2020 04:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86796 * 119.99943 * 2 1 4 4 H 1.48495 * 109.47216 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47043 * 299.99844 * 3 2 1 6 6 H 1.48503 * 109.47061 * 59.99506 * 3 2 1 7 7 C 1.38805 * 120.00006 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00286 * 180.02562 * 7 2 1 9 9 N 1.36939 * 120.00197 * 0.02562 * 7 2 1 10 10 C 1.46507 * 120.00250 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.46974 * 179.97438 * 10 9 7 12 12 N 1.30964 * 126.61016 * 270.03635 * 11 10 9 13 13 N 1.29038 * 109.70964 * 180.02562 * 12 11 10 14 14 C 1.29893 * 109.21929 * 0.06979 * 13 12 11 15 15 N 1.34601 * 107.62310 * 359.78061 * 14 13 12 16 16 C 1.47496 * 125.04200 * 180.49698 * 15 14 13 17 17 C 1.53633 * 107.08453 * 294.03099 * 16 15 14 18 18 C 1.50870 * 111.12195 * 80.32925 * 17 16 15 19 19 H 1.08995 * 108.02862 * 49.15466 * 18 17 16 20 20 N 1.46503 * 108.02483 * 165.57026 * 18 17 16 21 21 C 1.34779 * 119.99553 * 204.99884 * 20 18 17 22 22 O 1.21699 * 120.00236 * 0.02562 * 21 20 18 23 23 C 1.46672 * 119.99931 * 179.97438 * 21 20 18 24 24 C 1.37874 * 126.23465 * 179.68875 * 23 21 20 25 25 C 1.39842 * 107.08651 * 179.85234 * 24 23 21 26 26 C 1.35452 * 107.86182 * 0.41542 * 25 24 23 27 27 N 1.35536 * 108.87511 * 359.74737 * 26 25 24 28 28 H 0.96991 * 125.67902 * 180.02562 * 27 26 25 29 29 C 1.50835 * 116.69168 * 287.45077 * 18 17 16 30 30 C 1.51888 * 127.81060 * 179.78937 * 14 13 12 31 31 H 0.96997 * 120.00431 * 0.02562 * 1 2 3 32 32 H 0.97001 * 119.99698 * 359.97438 * 9 7 2 33 33 H 1.08999 * 109.47315 * 59.99002 * 10 9 7 34 34 H 1.09003 * 109.46381 * 299.99563 * 10 9 7 35 35 H 1.09004 * 109.93003 * 53.42681 * 16 15 14 36 36 H 1.09001 * 109.93306 * 174.55329 * 16 15 14 37 37 H 1.08993 * 109.15000 * 200.75305 * 17 16 15 38 38 H 1.09002 * 109.14970 * 319.96207 * 17 16 15 39 39 H 0.96994 * 120.00343 * 24.99396 * 20 18 17 40 40 H 1.07999 * 126.45803 * 0.02562 * 24 23 21 41 41 H 1.07998 * 126.07042 * 180.16414 * 25 24 23 42 42 H 1.08001 * 125.56581 * 179.72056 * 26 25 24 43 43 H 1.08995 * 109.02168 * 311.95117 * 29 18 17 44 44 H 1.09007 * 109.24655 * 192.77475 * 29 18 17 45 45 H 1.09002 * 109.96767 * 4.41933 * 30 14 13 46 46 H 1.09002 * 109.97004 * 125.64001 * 30 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3464 0.0006 5 1 1.8914 2.3964 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0788 -4.8022 0.0021 12 7 0.5703 -5.3947 1.0535 13 7 -0.2313 -6.3339 0.6787 14 6 -0.2629 -6.3764 -0.6191 15 7 0.5565 -5.4125 -1.0786 16 6 0.7997 -5.1154 -2.5027 17 6 1.5188 -6.3339 -3.1015 18 6 0.5411 -7.4351 -3.4295 19 1 -0.2814 -6.9983 -3.9957 20 7 1.2204 -8.4008 -4.2969 21 6 0.5024 -9.1788 -5.1311 22 8 -0.7100 -9.0787 -5.1641 23 6 1.1824 -10.1452 -5.9999 24 6 0.5781 -11.0045 -6.8928 25 6 1.5959 -11.7396 -7.5087 26 6 2.7772 -11.3322 -6.9860 27 7 2.5398 -10.3637 -6.0680 28 1 3.2141 -9.9013 -5.5463 29 6 -0.0474 -8.1884 -2.2628 30 6 -1.0615 -7.3210 -1.5006 31 1 -0.4850 0.8400 -0.0004 32 1 0.3555 -2.3880 0.0005 33 1 2.6842 -3.7141 0.8921 34 1 2.6853 -3.7149 -0.8879 35 1 -0.1484 -4.9542 -3.0158 36 1 1.4275 -4.2292 -2.5955 37 1 2.0360 -6.0319 -4.0121 38 1 2.2486 -6.7071 -2.3830 39 1 2.1867 -8.4802 -4.2710 40 1 -0.4814 -11.0915 -7.0830 41 1 1.4633 -12.5003 -8.2638 42 1 3.7497 -11.7166 -7.2563 43 1 0.7559 -8.4787 -1.5857 44 1 -0.5472 -9.0851 -2.6293 45 1 -1.7026 -7.9520 -0.8851 46 1 -1.6669 -6.7505 -2.2050 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127939164.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:42 Heat of formation + Delta-G solvation = 78.835230 kcal Electronic energy + Delta-G solvation = -29491.095162 eV Core-core repulsion = 25417.156731 eV Total energy + Delta-G solvation = -4073.938431 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -44.35941 -42.22464 -40.60506 -38.41369 -36.93181 -35.78176 -34.68731 -33.30864 -32.53724 -31.82146 -30.95953 -30.07548 -27.88220 -27.00834 -25.43737 -24.73911 -23.80379 -22.41635 -21.80359 -21.50582 -21.18132 -20.99228 -19.92072 -19.37660 -18.26530 -17.47819 -17.07461 -16.78554 -16.60801 -16.32330 -16.08858 -15.80145 -15.37396 -15.16644 -15.10686 -14.73485 -14.56060 -14.42537 -14.35756 -14.03748 -13.90326 -13.56832 -13.43719 -13.22038 -13.10099 -12.93213 -12.82967 -12.69579 -12.54283 -12.21929 -12.07213 -11.93287 -11.89585 -11.43724 -11.29168 -11.06459 -11.03195 -10.35660 -10.13139 -9.94103 -9.17802 -9.12454 -7.97775 -5.30687 0.46015 0.80049 1.48484 1.51216 1.51333 1.60869 1.77664 1.85058 1.92321 2.24982 2.36363 2.55875 3.13133 3.33591 3.37190 3.42740 3.60921 3.71671 3.81818 3.91158 3.99791 4.05574 4.17150 4.25330 4.28101 4.35190 4.42932 4.44685 4.54821 4.57096 4.63197 4.79817 4.84976 4.94243 4.99494 5.04966 5.06293 5.12634 5.17374 5.27628 5.30531 5.48318 5.74777 5.91201 5.93727 6.19281 6.40359 6.61721 7.09021 7.27185 7.71269 7.92197 8.19161 9.25715 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.017005 B = 0.002187 C = 0.002046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.175910 B =12799.845650 C =13682.137479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.075 4.075 3 Si 0.980 3.020 4 H -0.258 1.258 5 H -0.292 1.292 6 H -0.300 1.300 7 C -0.243 4.243 8 H 0.090 0.910 9 N -0.737 5.737 10 C 0.242 3.758 11 C 0.181 3.819 12 N -0.336 5.336 13 N -0.338 5.338 14 C 0.178 3.822 15 N -0.454 5.454 16 C 0.101 3.899 17 C -0.128 4.128 18 C 0.150 3.850 19 H 0.081 0.919 20 N -0.715 5.715 21 C 0.590 3.410 22 O -0.568 6.568 23 C -0.082 4.082 24 C -0.129 4.129 25 C -0.232 4.232 26 C 0.045 3.955 27 N -0.527 5.527 28 H 0.431 0.569 29 C -0.115 4.115 30 C -0.021 4.021 31 H 0.251 0.749 32 H 0.370 0.630 33 H 0.052 0.948 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.116 0.884 37 H 0.127 0.873 38 H 0.081 0.919 39 H 0.410 0.590 40 H 0.134 0.866 41 H 0.157 0.843 42 H 0.211 0.789 43 H 0.065 0.935 44 H 0.084 0.916 45 H 0.110 0.890 46 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.413 -24.851 -18.967 32.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.267 4.267 3 Si 0.808 3.192 4 H -0.182 1.182 5 H -0.219 1.219 6 H -0.227 1.227 7 C -0.374 4.374 8 H 0.108 0.892 9 N -0.381 5.381 10 C 0.113 3.887 11 C -0.088 4.088 12 N -0.176 5.176 13 N -0.177 5.177 14 C -0.091 4.091 15 N -0.144 5.144 16 C -0.020 4.020 17 C -0.166 4.166 18 C 0.046 3.954 19 H 0.099 0.901 20 N -0.366 5.366 21 C 0.379 3.621 22 O -0.447 6.447 23 C -0.195 4.195 24 C -0.156 4.156 25 C -0.256 4.256 26 C -0.092 4.092 27 N -0.124 5.124 28 H 0.271 0.729 29 C -0.155 4.155 30 C -0.061 4.061 31 H 0.060 0.940 32 H 0.202 0.798 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.128 0.872 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.100 0.900 39 H 0.246 0.754 40 H 0.152 0.848 41 H 0.175 0.825 42 H 0.228 0.772 43 H 0.084 0.916 44 H 0.102 0.898 45 H 0.129 0.871 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 8.556 -24.884 -17.425 31.560 hybrid contribution 0.387 1.562 -0.495 1.683 sum 8.943 -23.322 -17.920 30.741 Atomic orbital electron populations 1.69860 1.06978 1.26163 1.59106 1.25665 0.96333 1.01454 1.03241 0.84987 0.78505 0.79263 0.76412 1.18229 1.21909 1.22717 1.19683 0.91892 0.84193 1.41623 0.89185 1.42462 1.05432 1.00376 1.89786 1.19094 0.89407 0.79012 1.01155 1.24951 1.01361 0.99422 0.83049 1.74458 1.10449 1.06906 1.25826 1.74101 1.17264 1.16313 1.10065 1.25317 0.96762 0.94529 0.92516 1.46221 1.33281 1.25428 1.09511 1.22662 1.04131 1.00359 0.74897 1.21829 0.98013 0.92841 1.03914 1.20265 0.95828 0.88468 0.90881 0.90066 1.45898 1.10854 1.39368 1.40462 1.17271 0.86337 0.79634 0.78887 1.90844 1.14696 1.69512 1.69615 1.20209 0.84332 1.06832 1.08117 1.21537 1.00038 0.96865 0.97185 1.21222 0.91877 1.06024 1.06475 1.22709 1.01445 0.92377 0.92704 1.42017 1.05974 1.31416 1.33036 0.72885 1.21560 0.98506 0.98902 0.96485 1.20579 0.95610 0.94234 0.95689 0.94021 0.79844 0.93062 0.91197 0.87247 0.86600 0.85520 0.90014 0.75398 0.84808 0.82509 0.77198 0.91627 0.89759 0.87127 0.87847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.24 13.06 21.65 0.28 -58.96 16 2 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 3 Si 0.98 44.71 29.55 68.60 2.03 46.74 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 6 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 7 C -0.24 -12.89 9.99 84.03 0.84 -12.05 16 8 H 0.09 4.42 7.83 -2.91 -0.02 4.40 16 9 N -0.74 -36.65 5.59 -347.17 -1.94 -38.59 16 10 C 0.24 9.40 6.48 85.63 0.55 9.95 16 11 C 0.18 6.86 7.45 138.12 1.03 7.89 16 12 N -0.34 -14.67 12.24 -50.44 -0.62 -15.29 16 13 N -0.34 -13.41 12.23 -50.00 -0.61 -14.02 16 14 C 0.18 5.43 7.03 138.83 0.98 6.40 16 15 N -0.45 -13.33 2.72 -500.63 -1.36 -14.69 16 16 C 0.10 2.00 6.47 86.40 0.56 2.56 16 17 C -0.13 -1.55 5.05 30.11 0.15 -1.40 16 18 C 0.15 2.12 1.90 43.60 0.08 2.20 16 19 H 0.08 1.36 7.13 -2.39 -0.02 1.34 16 20 N -0.71 -8.12 4.99 -453.20 -2.26 -10.38 16 21 C 0.59 10.58 7.39 86.44 0.64 11.22 16 22 O -0.57 -14.94 15.99 -4.35 -0.07 -15.01 16 23 C -0.08 -1.22 7.06 40.35 0.28 -0.94 16 24 C -0.13 -2.15 10.65 22.57 0.24 -1.91 16 25 C -0.23 -2.53 10.81 22.01 0.24 -2.29 16 26 C 0.04 0.26 11.89 83.48 0.99 1.25 16 27 N -0.53 -3.51 5.99 -183.62 -1.10 -4.61 16 28 H 0.43 -0.05 8.19 -92.71 -0.76 -0.81 16 29 C -0.12 -2.00 5.09 30.12 0.15 -1.84 16 30 C -0.02 -0.44 6.01 30.45 0.18 -0.26 16 31 H 0.25 14.87 8.31 -92.71 -0.77 14.09 16 32 H 0.37 20.68 7.66 -92.71 -0.71 19.97 16 33 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 34 H 0.07 2.27 7.46 -2.39 -0.02 2.26 16 35 H 0.11 1.97 7.87 -2.39 -0.02 1.95 16 36 H 0.12 2.41 7.16 -2.39 -0.02 2.39 16 37 H 0.13 0.85 8.12 -2.39 -0.02 0.83 16 38 H 0.08 1.05 8.08 -2.39 -0.02 1.03 16 39 H 0.41 1.94 7.67 -92.71 -0.71 1.23 16 40 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 41 H 0.16 1.15 8.06 -2.91 -0.02 1.13 16 42 H 0.21 -0.52 8.06 -2.91 -0.02 -0.54 16 43 H 0.06 1.21 7.92 -2.39 -0.02 1.19 16 44 H 0.08 1.58 7.22 -2.38 -0.02 1.56 16 45 H 0.11 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.10 1.93 7.90 -2.39 -0.02 1.91 16 Total: -1.00 -83.65 381.44 0.61 -83.04 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -1.13 Total: 24.69 kcal Atomic # 6 Polarization: 9.68 SS G_CDS: 7.39 Total: 17.08 kcal Atomic # 7 Polarization: -148.92 SS G_CDS: -7.61 Total: -156.53 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: -0.07 Total: -15.01 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -83.65 0.61 -83.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127939164.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.876 kcal (2) G-P(sol) polarization free energy of solvation -83.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds