Wall clock time and date at job start Wed Apr 1 2020 04:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86802 * 120.00258 * 2 1 4 4 H 1.48496 * 109.47172 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46727 * 299.99842 * 3 2 1 6 6 H 1.48503 * 109.47011 * 59.99827 * 3 2 1 7 7 C 1.38811 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00136 * 164.45905 * 7 2 1 9 9 N 1.36939 * 120.00080 * 344.45363 * 7 2 1 10 10 C 1.47087 * 121.01045 * 155.89017 * 9 7 2 11 11 C 1.53266 * 109.21601 * 116.44625 * 10 9 7 12 12 N 1.46557 * 109.23862 * 45.98499 * 11 10 9 13 13 N 1.39749 * 127.32153 * 161.52999 * 12 11 10 14 14 C 1.31007 * 108.17607 * 179.18979 * 13 12 11 15 15 C 1.40073 * 108.25518 * 0.59967 * 14 13 12 16 16 C 1.50699 * 126.12454 * 179.85504 * 15 14 13 17 17 N 1.46494 * 109.47649 * 259.69350 * 16 15 14 18 18 C 1.34768 * 120.00757 * 180.02562 * 17 16 15 19 19 O 1.21290 * 119.99590 * 359.97438 * 18 17 16 20 20 C 1.50700 * 120.00381 * 180.02562 * 18 17 16 21 21 C 1.53003 * 109.47251 * 180.02562 * 20 18 17 22 22 C 1.50700 * 109.47251 * 180.02562 * 21 20 18 23 23 C 1.39865 * 126.03699 * 269.69139 * 22 21 20 24 24 N 1.30839 * 108.19968 * 179.82042 * 23 22 21 25 25 N 1.40080 * 108.20519 * 0.43442 * 24 23 22 26 26 H 0.97001 * 126.03862 * 179.70260 * 25 24 23 27 27 C 1.34946 * 107.92622 * 359.72223 * 25 24 23 28 28 C 1.34636 * 107.74961 * 359.59633 * 15 14 13 29 29 C 1.47502 * 121.01331 * 335.91877 * 9 7 2 30 30 H 0.97001 * 119.99465 * 359.97438 * 1 2 3 31 31 H 1.08998 * 109.51544 * 236.36551 * 10 9 7 32 32 H 1.08995 * 109.51694 * 356.52828 * 10 9 7 33 33 H 1.08992 * 109.50774 * 165.91359 * 11 10 9 34 34 H 1.08997 * 109.50747 * 286.06240 * 11 10 9 35 35 H 1.08002 * 125.87420 * 180.42166 * 14 13 12 36 36 H 1.09003 * 109.47286 * 139.68939 * 16 15 14 37 37 H 1.09007 * 109.47163 * 19.69807 * 16 15 14 38 38 H 0.97010 * 119.99669 * 359.97438 * 17 16 15 39 39 H 1.08996 * 109.47055 * 60.00043 * 20 18 17 40 40 H 1.08998 * 109.47084 * 299.99623 * 20 18 17 41 41 H 1.09007 * 109.47046 * 300.00301 * 21 20 18 42 42 H 1.09003 * 109.47425 * 59.99447 * 21 20 18 43 43 H 1.08000 * 125.90014 * 359.97438 * 23 22 21 44 44 H 1.08001 * 126.12953 * 180.02562 * 27 25 24 45 45 H 1.08998 * 109.94906 * 103.52585 * 29 9 7 46 46 H 1.09003 * 109.94362 * 342.26891 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0606 -1.2194 -0.2500 9 7 1.3631 -2.3662 0.3189 10 6 1.8637 -3.6656 -0.1549 11 6 2.2727 -4.5188 1.0508 12 7 1.2231 -4.4474 2.0711 13 7 1.0189 -5.3250 3.1394 14 6 -0.0126 -4.8998 3.8261 15 6 -0.5057 -3.7441 3.2070 16 6 -1.6881 -2.9281 3.6619 17 7 -2.8592 -3.2712 2.8514 18 6 -4.0393 -2.6617 3.0802 19 8 -4.1318 -1.8293 3.9576 20 6 -5.2441 -3.0151 2.2467 21 6 -6.4442 -2.1856 2.7077 22 6 -7.6492 -2.5394 1.8747 23 6 -8.0358 -1.9195 0.6820 24 7 -9.1257 -2.5026 0.2530 25 7 -9.4730 -3.5069 1.1657 26 1 -10.2406 -4.0964 1.1008 27 6 -8.5514 -3.5091 2.1515 28 6 0.2694 -3.4898 2.1359 29 6 0.1425 -2.3552 1.1469 30 1 -0.4849 0.8401 0.0004 31 1 1.0792 -4.1765 -0.7131 32 1 2.7281 -3.5094 -0.8003 33 1 2.4048 -5.5539 0.7362 34 1 3.2079 -4.1407 1.4637 35 1 -0.4153 -5.3624 4.7151 36 1 -1.4640 -1.8677 3.5459 37 1 -1.8962 -3.1429 4.7101 38 1 -2.7852 -3.9366 2.1494 39 1 -5.4683 -4.0753 2.3636 40 1 -5.0361 -2.8010 1.1984 41 1 -6.6523 -2.3991 3.7562 42 1 -6.2197 -1.1253 2.5906 43 1 -7.5220 -1.1024 0.1975 44 1 -8.5364 -4.1673 3.0076 45 1 -0.7349 -2.5065 0.5181 46 1 0.0618 -1.4066 1.6777 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001128512403.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:03 Heat of formation + Delta-G solvation = 112.293441 kcal Electronic energy + Delta-G solvation = -29357.004944 eV Core-core repulsion = 25284.517370 eV Total energy + Delta-G solvation = -4072.487574 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.40381 -42.04720 -40.43468 -37.95530 -36.09109 -34.82424 -34.60243 -32.89356 -32.19756 -31.80798 -30.69345 -29.64532 -27.79115 -26.48041 -25.21143 -24.54470 -23.27244 -22.86324 -21.56048 -21.26124 -20.73022 -19.92445 -18.68511 -18.52968 -18.05132 -17.37270 -16.92464 -16.69970 -16.47664 -16.25020 -15.52814 -15.47814 -15.34842 -15.24905 -15.02648 -14.82359 -14.61192 -14.57881 -13.96625 -13.87641 -13.55370 -13.33690 -13.27066 -13.00896 -12.93025 -12.89778 -12.74297 -12.59247 -12.31374 -12.01866 -11.97029 -11.87743 -11.59167 -11.42619 -10.86879 -10.76863 -10.55292 -10.04724 -9.91610 -9.42656 -9.29848 -8.93730 -7.97687 -5.41095 0.95586 1.03515 1.45616 1.49450 1.57173 1.61469 1.68881 1.83737 1.86331 2.14282 2.45652 2.69557 3.21485 3.44617 3.63314 3.83799 3.86350 4.04998 4.12738 4.18398 4.21794 4.25794 4.34074 4.38580 4.43811 4.50220 4.69197 4.77584 4.78960 4.81844 4.89307 4.90076 4.96965 4.99178 5.04901 5.27140 5.34523 5.39285 5.42693 5.58897 5.60314 5.74170 5.78933 6.11257 6.21682 6.51670 6.73676 6.76836 6.82713 7.00584 7.42118 7.66597 8.17678 9.11578 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.009704 B = 0.002772 C = 0.002380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.713331 B =10098.184927 C =11760.453373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.042 4.042 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.290 1.290 6 H -0.295 1.295 7 C -0.266 4.266 8 H 0.079 0.921 9 N -0.616 5.616 10 C 0.128 3.872 11 C 0.117 3.883 12 N -0.368 5.368 13 N -0.328 5.328 14 C 0.067 3.933 15 C -0.273 4.273 16 C 0.216 3.784 17 N -0.715 5.715 18 C 0.508 3.492 19 O -0.588 6.588 20 C -0.124 4.124 21 C -0.016 4.016 22 C -0.251 4.251 23 C 0.044 3.956 24 N -0.336 5.336 25 N -0.473 5.473 26 H 0.451 0.549 27 C 0.077 3.923 28 C 0.094 3.906 29 C 0.251 3.749 30 H 0.252 0.748 31 H 0.040 0.960 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.076 0.924 35 H 0.215 0.785 36 H 0.040 0.960 37 H 0.083 0.917 38 H 0.408 0.592 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.187 0.813 44 H 0.214 0.786 45 H 0.036 0.964 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 -12.781 4.841 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.239 4.239 3 Si 0.793 3.207 4 H -0.190 1.190 5 H -0.217 1.217 6 H -0.222 1.222 7 C -0.396 4.396 8 H 0.096 0.904 9 N -0.340 5.340 10 C 0.001 3.999 11 C -0.005 4.005 12 N -0.149 5.149 13 N -0.148 5.148 14 C -0.120 4.120 15 C -0.286 4.286 16 C 0.091 3.909 17 N -0.366 5.366 18 C 0.297 3.703 19 O -0.469 6.469 20 C -0.164 4.164 21 C -0.055 4.055 22 C -0.262 4.262 23 C -0.142 4.142 24 N -0.159 5.159 25 N -0.182 5.182 26 H 0.298 0.702 27 C -0.072 4.072 28 C -0.038 4.038 29 C 0.124 3.876 30 H 0.062 0.938 31 H 0.058 0.942 32 H 0.117 0.883 33 H 0.130 0.870 34 H 0.094 0.906 35 H 0.232 0.768 36 H 0.058 0.942 37 H 0.101 0.899 38 H 0.243 0.757 39 H 0.136 0.864 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.204 0.796 44 H 0.230 0.770 45 H 0.054 0.946 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.345 -13.004 4.294 18.438 hybrid contribution 0.231 1.356 0.128 1.381 sum -12.114 -11.649 4.422 17.378 Atomic orbital electron populations 1.70088 1.06331 1.26107 1.54879 1.25708 0.96141 1.01254 1.00771 0.85257 0.78704 0.80067 0.76710 1.19011 1.21696 1.22171 1.19503 0.92845 0.84987 1.42247 0.90380 1.44451 1.29342 1.02447 1.57739 1.21433 0.99739 0.85570 0.93121 1.22527 0.88094 1.02834 0.87087 1.48680 1.24209 1.19456 1.22575 1.77159 1.20943 1.16622 1.00030 1.24254 0.93333 0.94380 0.99986 1.19567 1.04654 1.03430 1.00910 1.19124 0.81157 0.95871 0.94711 1.46159 1.09112 1.43324 1.37964 1.21340 0.85112 0.80039 0.83850 1.90670 1.85742 1.34890 1.35629 1.21676 0.91197 1.03529 0.99955 1.19436 0.88966 0.99082 0.97999 1.20182 1.02488 1.03361 1.00208 1.24145 0.94083 1.00163 0.95826 1.77282 1.17954 1.04591 1.16078 1.46352 1.24340 1.29495 1.18042 0.70243 1.22960 0.89713 0.99557 0.94945 1.22225 0.90378 0.93006 0.98160 1.19339 0.88562 0.91714 0.88015 0.93836 0.94152 0.88325 0.87025 0.90608 0.76810 0.94190 0.89879 0.75717 0.86370 0.88554 0.90522 0.92391 0.79575 0.76954 0.94647 0.91075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -51.90 11.07 21.65 0.24 -51.66 16 2 C -0.04 -2.25 5.00 84.86 0.42 -1.82 16 3 Si 0.96 43.33 29.58 68.60 2.03 45.36 16 4 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 5 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 6 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 7 C -0.27 -13.62 9.66 84.03 0.81 -12.80 16 8 H 0.08 3.83 7.88 -2.91 -0.02 3.81 16 9 N -0.62 -28.61 3.01 -701.12 -2.11 -30.72 16 10 C 0.13 4.59 6.49 86.36 0.56 5.16 16 11 C 0.12 3.71 7.45 86.46 0.64 4.36 16 12 N -0.37 -13.32 4.03 -334.03 -1.35 -14.67 16 13 N -0.33 -11.05 12.61 -56.80 -0.72 -11.77 16 14 C 0.07 1.94 11.97 85.26 1.02 2.96 16 15 C -0.27 -8.98 5.46 -20.25 -0.11 -9.09 16 16 C 0.22 6.75 5.95 85.63 0.51 7.26 16 17 N -0.71 -19.45 5.55 -466.79 -2.59 -22.04 16 18 C 0.51 14.15 7.83 87.66 0.69 14.83 16 19 O -0.59 -21.11 15.98 -3.06 -0.05 -21.16 16 20 C -0.12 -2.41 5.68 29.85 0.17 -2.24 16 21 C -0.02 -0.31 4.99 29.85 0.15 -0.16 16 22 C -0.25 -4.54 5.35 -20.15 -0.11 -4.65 16 23 C 0.04 0.92 11.96 85.23 1.02 1.94 16 24 N -0.34 -7.40 12.70 -57.03 -0.72 -8.13 16 25 N -0.47 -6.79 7.36 -57.59 -0.42 -7.21 16 26 H 0.45 3.40 8.96 -213.33 -1.91 1.48 16 27 C 0.08 0.98 11.90 83.54 0.99 1.97 16 28 C 0.09 3.62 6.71 41.30 0.28 3.90 16 29 C 0.25 11.47 5.11 85.55 0.44 11.91 16 30 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.10 3.20 7.94 -2.39 -0.02 3.18 16 33 H 0.11 2.82 8.14 -2.39 -0.02 2.80 16 34 H 0.08 2.40 8.14 -2.39 -0.02 2.39 16 35 H 0.22 4.33 8.06 -2.91 -0.02 4.31 16 36 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 37 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 38 H 0.41 9.73 8.46 -92.70 -0.78 8.95 16 39 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 41 H 0.08 1.48 8.10 -2.38 -0.02 1.46 16 42 H 0.06 1.40 8.10 -2.39 -0.02 1.38 16 43 H 0.19 3.51 8.06 -2.91 -0.02 3.48 16 44 H 0.21 0.95 8.06 -2.91 -0.02 0.93 16 45 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.07 3.78 6.46 -2.39 -0.02 3.76 16 Total: -1.00 -72.96 388.27 0.13 -72.84 By element: Atomic # 1 Polarization: 27.30 SS G_CDS: -1.67 Total: 25.64 kcal Atomic # 6 Polarization: 16.03 SS G_CDS: 7.49 Total: 23.52 kcal Atomic # 7 Polarization: -138.52 SS G_CDS: -7.67 Total: -146.19 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -0.05 Total: -21.16 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -72.96 0.13 -72.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001128512403.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.131 kcal (2) G-P(sol) polarization free energy of solvation -72.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds