Wall clock time and date at job start Wed Apr 1 2020 04:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99692 * 2 1 4 4 H 1.48493 * 109.47142 * 239.99939 * 3 2 1 5 5 H 1.48495 * 109.47287 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46534 * 119.99931 * 3 2 1 7 7 C 1.38804 * 120.00039 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99857 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00167 * 0.02562 * 7 2 1 10 10 C 1.47016 * 125.64759 * 359.97413 * 9 7 2 11 11 C 1.54328 * 107.27129 * 178.97964 * 10 9 7 12 12 H 1.08997 * 110.72346 * 96.34477 * 11 10 9 13 13 N 1.46504 * 110.71712 * 219.44679 * 11 10 9 14 14 C 1.34776 * 119.99735 * 271.15030 * 13 11 10 15 15 O 1.21282 * 119.99940 * 0.02562 * 14 13 11 16 16 C 1.50698 * 120.00035 * 179.97438 * 14 13 11 17 17 C 1.53006 * 109.47184 * 180.02562 * 16 14 13 18 18 N 1.46496 * 109.46995 * 180.02562 * 17 16 14 19 19 C 1.36344 * 125.63489 * 269.69314 * 18 17 16 20 20 C 1.34851 * 108.21591 * 179.83123 * 19 18 17 21 21 C 1.40888 * 107.41960 * 0.42729 * 20 19 18 22 22 C 1.34858 * 107.41632 * 359.73515 * 21 20 19 23 23 C 1.55156 * 103.10078 * 337.89391 * 11 10 9 24 24 H 1.09001 * 111.00736 * 153.49219 * 23 11 10 25 25 N 1.46503 * 111.00393 * 277.34239 * 23 11 10 26 26 C 1.35315 * 125.86853 * 85.00407 * 25 23 11 27 27 C 1.35355 * 106.17423 * 180.02562 * 26 25 23 28 28 N 1.33769 * 106.49601 * 359.97438 * 27 26 25 29 29 N 1.28636 * 108.88722 * 359.74341 * 28 27 26 30 30 C 1.47427 * 125.64503 * 180.02562 * 9 7 2 31 31 H 0.97001 * 120.00154 * 0.02562 * 1 2 3 32 32 H 1.08993 * 109.88530 * 59.56164 * 10 9 7 33 33 H 1.09000 * 109.88329 * 298.39633 * 10 9 7 34 34 H 0.96998 * 120.00303 * 91.15204 * 13 11 10 35 35 H 1.09001 * 109.46665 * 60.00498 * 16 14 13 36 36 H 1.08993 * 109.47304 * 300.00054 * 16 14 13 37 37 H 1.09001 * 109.46801 * 300.00442 * 17 16 14 38 38 H 1.09001 * 109.46998 * 60.00038 * 17 16 14 39 39 H 1.07993 * 125.88986 * 359.96506 * 19 18 17 40 40 H 1.08005 * 126.29243 * 180.15818 * 20 19 18 41 41 H 1.07996 * 126.29485 * 179.73326 * 21 20 19 42 42 H 1.07998 * 125.88971 * 180.02562 * 22 21 20 43 43 H 1.07997 * 126.91065 * 0.02562 * 26 25 23 44 44 H 1.07994 * 126.75077 * 179.97438 * 27 26 25 45 45 H 1.08993 * 110.36909 * 322.92275 * 30 9 7 46 46 H 1.08996 * 110.36784 * 85.25615 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2124 5 1 1.2852 2.7465 0.0006 6 1 3.1039 1.6964 1.2126 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 -0.1374 -2.5328 0.0005 11 6 -0.4483 -4.0442 -0.0257 12 1 -0.6346 -4.4172 0.9814 13 7 -1.5908 -4.3232 -0.8994 14 6 -2.8427 -4.2953 -0.4012 15 8 -3.0236 -4.0388 0.7703 16 6 -4.0179 -4.5817 -1.3000 17 6 -5.3136 -4.4853 -0.4918 18 7 -6.4559 -4.7643 -1.3654 19 6 -7.1531 -3.8372 -2.0819 20 6 -8.1258 -4.4757 -2.7637 21 6 -8.0317 -5.8458 -2.4492 22 6 -7.0013 -5.9932 -1.5917 23 6 0.8512 -4.6605 -0.6077 24 1 0.9808 -5.6890 -0.2709 25 7 0.8590 -4.5844 -2.0707 26 6 1.2647 -3.5243 -2.8073 27 6 1.1040 -3.8818 -4.1029 28 7 0.6148 -5.1268 -4.0955 29 7 0.4865 -5.5166 -2.8764 30 6 1.9336 -3.7311 0.0016 31 1 -0.4850 0.8400 -0.0004 32 1 -0.5575 -2.0525 -0.8831 33 1 -0.5543 -2.0842 0.9022 34 1 -1.4461 -4.5280 -1.8364 35 1 -3.9219 -5.5851 -1.7148 36 1 -4.0410 -3.8539 -2.1109 37 1 -5.2907 -5.2129 0.3195 38 1 -5.4093 -3.4818 -0.0772 39 1 -6.9585 -2.7752 -2.1018 40 1 -8.8474 -4.0198 -3.4255 41 1 -8.6678 -6.6332 -2.8256 42 1 -6.6658 -6.9243 -1.1593 43 1 1.6411 -2.5826 -2.4362 44 1 1.3268 -3.2802 -4.9716 45 1 2.8332 -3.7408 -0.6137 46 1 2.1663 -4.0414 1.0202 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129342782.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:12:15 Heat of formation + Delta-G solvation = 141.269495 kcal Electronic energy + Delta-G solvation = -30424.308175 eV Core-core repulsion = 26353.077097 eV Total energy + Delta-G solvation = -4071.231078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.27086 -42.05354 -41.06247 -39.39651 -35.84644 -35.05045 -34.87118 -33.45208 -31.87188 -31.20999 -30.15686 -29.64649 -29.05289 -26.73933 -25.25886 -24.03029 -23.51612 -22.40114 -21.52677 -21.40862 -21.34885 -20.79031 -19.30387 -18.83676 -18.54231 -17.89585 -17.16955 -16.85969 -16.79036 -16.40849 -15.91819 -15.71936 -15.62333 -15.07589 -14.97956 -14.92797 -14.59088 -14.22936 -14.02381 -13.90194 -13.86640 -13.36390 -13.18875 -13.09856 -13.06354 -12.90631 -12.82660 -12.72812 -12.54896 -12.33553 -12.27704 -12.10051 -11.89025 -11.83456 -11.20687 -11.10756 -10.74762 -10.27510 -10.22333 -9.55186 -9.05991 -9.00855 -7.87728 -5.26363 0.64578 1.28696 1.37044 1.44566 1.49618 1.50585 1.56579 1.63537 1.78287 2.16623 2.24750 2.47364 3.13514 3.33024 3.39341 3.49613 3.56960 3.68524 3.74349 3.78495 3.91940 4.19186 4.21677 4.24837 4.32891 4.37306 4.41177 4.42210 4.45680 4.68093 4.70170 4.78546 4.79646 4.80109 4.83776 5.06653 5.28962 5.41105 5.41986 5.44004 5.48151 5.67688 5.72397 6.08771 6.11009 6.26107 6.34647 6.48047 6.98558 7.04027 7.53378 7.68477 8.27617 9.20504 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010709 B = 0.003177 C = 0.002776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2613.983011 B = 8811.833338 C =10084.480582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.054 4.054 3 Si 0.971 3.029 4 H -0.273 1.273 5 H -0.304 1.304 6 H -0.281 1.281 7 C -0.238 4.238 8 H 0.094 0.906 9 N -0.615 5.615 10 C 0.189 3.811 11 C 0.121 3.879 12 H 0.116 0.884 13 N -0.710 5.710 14 C 0.521 3.479 15 O -0.569 6.569 16 C -0.143 4.143 17 C 0.128 3.872 18 N -0.450 5.450 19 C -0.032 4.032 20 C -0.218 4.218 21 C -0.220 4.220 22 C -0.023 4.023 23 C 0.126 3.874 24 H 0.158 0.842 25 N -0.274 5.274 26 C -0.018 4.018 27 C -0.064 4.064 28 N -0.292 5.292 29 N -0.111 5.111 30 C 0.127 3.873 31 H 0.244 0.756 32 H 0.022 0.978 33 H 0.009 0.991 34 H 0.402 0.598 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.104 0.896 38 H 0.089 0.911 39 H 0.170 0.830 40 H 0.144 0.856 41 H 0.148 0.852 42 H 0.181 0.819 43 H 0.187 0.813 44 H 0.212 0.788 45 H 0.071 0.929 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.714 -11.554 -4.223 13.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.248 4.248 3 Si 0.800 3.200 4 H -0.198 1.198 5 H -0.231 1.231 6 H -0.207 1.207 7 C -0.366 4.366 8 H 0.112 0.888 9 N -0.342 5.342 10 C 0.063 3.937 11 C 0.013 3.987 12 H 0.134 0.866 13 N -0.362 5.362 14 C 0.308 3.692 15 O -0.448 6.448 16 C -0.183 4.183 17 C 0.006 3.994 18 N -0.126 5.126 19 C -0.161 4.161 20 C -0.243 4.243 21 C -0.244 4.244 22 C -0.152 4.152 23 C 0.023 3.977 24 H 0.176 0.824 25 N -0.068 5.068 26 C -0.169 4.169 27 C -0.221 4.221 28 N -0.159 5.159 29 N -0.089 5.089 30 C 0.000 4.000 31 H 0.054 0.946 32 H 0.040 0.960 33 H 0.027 0.973 34 H 0.238 0.762 35 H 0.137 0.863 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.187 0.813 40 H 0.162 0.838 41 H 0.165 0.835 42 H 0.198 0.802 43 H 0.204 0.796 44 H 0.228 0.772 45 H 0.089 0.911 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.152 -12.535 -3.266 14.340 hybrid contribution 0.776 2.569 -0.073 2.684 sum -5.376 -9.966 -3.339 11.805 Atomic orbital electron populations 1.70154 1.06290 1.25251 1.57607 1.25535 0.96250 1.00781 1.02248 0.85263 0.77101 0.79292 0.78301 1.19823 1.23118 1.20671 1.19325 0.91102 0.82600 1.43559 0.88830 1.44583 1.01252 1.00876 1.87486 1.21146 0.84461 0.89469 0.98660 1.22582 0.84031 0.96816 0.95231 0.86609 1.45826 1.05679 1.71070 1.13576 1.20808 0.84461 0.75520 0.88375 1.90725 1.85720 1.49580 1.18806 1.21914 0.91366 1.06223 0.98825 1.21454 0.81967 1.04605 0.91355 1.44270 1.24832 1.07343 1.36166 1.22215 0.97647 0.95974 1.00285 1.21193 1.02510 0.94699 1.05854 1.21203 1.01923 0.97128 1.04141 1.22305 0.99039 0.89218 1.04669 1.23437 0.97346 1.03991 0.72935 0.82428 1.47335 1.40685 1.10090 1.08646 1.24048 1.04860 0.96106 0.91927 1.23988 1.05884 0.94407 0.97835 1.75023 1.16881 1.12467 1.11487 1.78193 1.20552 1.15169 0.95030 1.22179 0.93938 0.83811 1.00024 0.94638 0.95974 0.97320 0.76223 0.86265 0.87943 0.87775 0.89210 0.81315 0.83792 0.83469 0.80170 0.79626 0.77159 0.91115 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -52.58 10.31 21.65 0.22 -52.35 16 2 C -0.05 -2.76 5.49 84.86 0.47 -2.29 16 3 Si 0.97 42.01 29.55 68.60 2.03 44.03 16 4 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 5 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 6 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 7 C -0.24 -11.27 10.08 84.03 0.85 -10.42 16 8 H 0.09 4.15 7.83 -2.91 -0.02 4.13 16 9 N -0.61 -25.71 2.24 -691.57 -1.55 -27.26 16 10 C 0.19 8.22 4.77 86.73 0.41 8.63 16 11 C 0.12 3.92 3.14 46.18 0.14 4.06 16 12 H 0.12 3.73 7.62 -2.39 -0.02 3.71 16 13 N -0.71 -21.32 5.07 -436.91 -2.22 -23.53 16 14 C 0.52 15.50 7.83 87.66 0.69 16.18 16 15 O -0.57 -20.84 15.67 -3.04 -0.05 -20.88 16 16 C -0.14 -3.13 6.02 29.85 0.18 -2.95 16 17 C 0.13 2.76 5.38 86.38 0.46 3.22 16 18 N -0.45 -9.76 2.75 -524.47 -1.44 -11.20 16 19 C -0.03 -0.71 11.43 83.21 0.95 0.24 16 20 C -0.22 -4.78 10.86 22.14 0.24 -4.54 16 21 C -0.22 -4.59 10.86 22.14 0.24 -4.35 16 22 C -0.02 -0.46 11.43 83.22 0.95 0.49 16 23 C 0.13 3.41 4.08 46.46 0.19 3.60 16 24 H 0.16 3.19 8.14 -2.39 -0.02 3.17 16 25 N -0.27 -8.01 2.44 -320.20 -0.78 -8.79 16 26 C -0.02 -0.55 10.02 83.49 0.84 0.28 16 27 C -0.06 -1.83 12.05 83.73 1.01 -0.82 16 28 N -0.29 -9.15 12.41 -58.26 -0.72 -9.87 16 29 N -0.11 -3.36 12.25 37.02 0.45 -2.91 16 30 C 0.13 3.86 6.20 86.93 0.54 4.40 16 31 H 0.24 13.67 8.31 -92.71 -0.77 12.90 16 32 H 0.02 1.11 7.27 -2.39 -0.02 1.09 16 33 H 0.01 0.46 7.50 -2.39 -0.02 0.44 16 34 H 0.40 11.72 6.77 -92.71 -0.63 11.09 16 35 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.10 2.11 8.10 -2.39 -0.02 2.09 16 38 H 0.09 2.12 8.10 -2.39 -0.02 2.10 16 39 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.14 2.67 8.06 -2.91 -0.02 2.65 16 41 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 42 H 0.18 2.66 8.06 -2.91 -0.02 2.63 16 43 H 0.19 6.58 6.83 -2.91 -0.02 6.56 16 44 H 0.21 4.60 8.06 -2.91 -0.02 4.57 16 45 H 0.07 2.05 7.86 -2.39 -0.02 2.03 16 46 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -64.94 382.70 4.48 -60.46 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: 0.37 Total: 36.58 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 8.16 Total: 15.73 kcal Atomic # 7 Polarization: -129.88 SS G_CDS: -6.04 Total: -135.92 kcal Atomic # 8 Polarization: -20.84 SS G_CDS: -0.05 Total: -20.88 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.03 kcal Total: -64.94 4.48 -60.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129342782.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.729 kcal (2) G-P(sol) polarization free energy of solvation -64.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 141.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds