Wall clock time and date at job start Wed Apr 1 2020 04:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64675 * 359.68852 * 9 7 2 11 11 C 1.55131 * 104.71847 * 155.81671 * 10 9 7 12 12 C 1.55153 * 101.48647 * 37.29562 * 11 10 9 13 13 H 1.09008 * 110.71987 * 82.69509 * 12 11 10 14 14 C 1.50705 * 110.72354 * 205.96741 * 12 11 10 15 15 N 1.30834 * 125.89692 * 54.99718 * 14 12 11 16 16 N 1.40085 * 108.20595 * 179.97438 * 15 14 12 17 17 H 0.97000 * 126.04122 * 180.02562 * 16 15 14 18 18 C 1.34953 * 107.92392 * 359.97438 * 16 15 14 19 19 C 1.35313 * 107.74485 * 359.75378 * 18 16 15 20 20 C 1.50705 * 126.04209 * 180.27076 * 19 18 16 21 21 N 1.46500 * 109.47169 * 260.14446 * 20 19 18 22 22 C 1.34774 * 120.00082 * 179.97438 * 21 20 19 23 23 O 1.21289 * 119.99849 * 359.97438 * 22 21 20 24 24 C 1.50692 * 120.00261 * 179.97438 * 22 21 20 25 25 C 1.50696 * 109.47412 * 180.02562 * 24 22 21 26 26 C 1.34671 * 126.59282 * 85.02412 * 25 24 22 27 27 N 1.34129 * 108.02027 * 179.97438 * 26 25 24 28 28 C 1.30496 * 109.25878 * 0.02562 * 27 26 25 29 29 N 1.35047 * 108.70174 * 359.76614 * 28 27 26 30 30 H 0.96994 * 126.40372 * 180.26755 * 29 28 27 31 31 C 1.47026 * 125.64697 * 179.97438 * 9 7 2 32 32 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 33 33 H 1.08994 * 110.36510 * 274.74946 * 10 9 7 34 34 H 1.09001 * 110.36249 * 37.07349 * 10 9 7 35 35 H 1.08999 * 111.19687 * 279.19300 * 11 10 9 36 36 H 1.08999 * 110.93608 * 155.29072 * 11 10 9 37 37 H 1.08001 * 126.12764 * 179.97438 * 18 16 15 38 38 H 1.09005 * 109.46616 * 20.13805 * 20 19 18 39 39 H 1.08997 * 109.47079 * 140.13966 * 20 19 18 40 40 H 0.97004 * 119.99881 * 359.97438 * 21 20 19 41 41 H 1.09004 * 109.47627 * 299.99924 * 24 22 21 42 42 H 1.08997 * 109.47047 * 60.00264 * 24 22 21 43 43 H 1.07995 * 125.99057 * 359.96359 * 26 25 24 44 44 H 1.08007 * 125.65243 * 179.97438 * 28 27 26 45 45 H 1.09003 * 109.87851 * 300.43791 * 31 9 7 46 46 H 1.08997 * 109.87950 * 61.60369 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5331 0.0065 11 6 -0.4016 -3.9325 -0.6105 12 6 0.7785 -4.7524 -0.0255 13 1 0.5462 -5.0977 0.9820 14 6 1.1180 -5.9139 -0.9238 15 7 1.4103 -5.8392 -2.1969 16 7 1.6635 -7.1351 -2.6646 17 1 1.9048 -7.3773 -3.5724 18 6 1.5135 -7.9872 -1.6289 19 6 1.1818 -7.2570 -0.5389 20 6 0.9235 -7.7962 0.8445 21 7 -0.5210 -7.8978 1.0671 22 6 -0.9907 -8.3593 2.2430 23 8 -0.2176 -8.6909 3.1167 24 6 -2.4765 -8.4633 2.4722 25 6 -2.7349 -9.0025 3.8555 26 6 -2.7903 -8.2905 4.9973 27 7 -3.0413 -9.1402 6.0043 28 6 -3.1430 -10.3517 5.5301 29 7 -2.9631 -10.3095 4.1923 30 1 -2.9895 -11.0645 3.5839 31 6 1.9319 -3.7275 0.0005 32 1 -0.4850 0.8401 0.0004 33 1 -0.5228 -2.4888 1.0266 34 1 -0.6018 -1.7576 -0.6056 35 1 -0.3522 -3.8987 -1.6989 36 1 -1.3589 -4.3332 -0.2772 37 1 1.6394 -9.0593 -1.6629 38 1 1.3761 -8.7832 0.9401 39 1 1.3586 -7.1237 1.5836 40 1 -1.1392 -7.6329 0.3681 41 1 -2.9289 -7.4761 2.3772 42 1 -2.9120 -9.1352 1.7328 43 1 -2.6560 -7.2227 5.0865 44 1 -3.3418 -11.2404 6.1108 45 1 2.5579 -3.8510 -0.8833 46 1 2.5289 -3.8641 0.9022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130426430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:28 Heat of formation + Delta-G solvation = 125.783592 kcal Electronic energy + Delta-G solvation = -29314.781217 eV Core-core repulsion = 25242.878620 eV Total energy + Delta-G solvation = -4071.902597 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.21528 -41.38604 -39.52839 -37.27920 -35.09747 -33.13631 -33.02482 -32.15797 -31.27279 -30.63770 -29.10970 -27.60636 -27.41137 -25.37887 -24.63390 -22.06848 -21.83051 -21.32249 -20.57480 -20.27841 -20.06931 -18.73461 -18.38427 -17.86950 -17.10771 -16.79154 -15.91184 -15.69995 -15.00865 -14.93926 -14.64283 -14.51120 -14.39025 -14.13947 -13.68858 -13.63609 -13.60251 -13.28519 -13.06717 -12.73962 -12.52674 -12.22773 -11.98042 -11.80658 -11.52398 -11.04525 -10.79886 -10.74532 -10.54142 -10.24476 -10.15749 -10.10927 -10.06852 -10.04241 -9.74198 -9.45752 -9.17484 -9.14440 -8.70711 -8.58190 -8.50761 -6.75407 -5.58503 -2.99585 1.73006 1.85510 2.50429 2.56462 2.83569 2.89401 3.03329 3.44764 3.45627 3.49413 3.50840 4.33694 4.53608 4.59530 4.62113 4.66686 4.69195 4.79233 5.07499 5.11517 5.23833 5.30393 5.38814 5.46634 5.54876 5.56440 5.67926 5.76156 5.93270 5.95375 6.00082 6.04443 6.30536 6.41768 6.52231 6.58076 6.60972 6.72016 6.77792 6.98815 7.15542 7.22263 7.39317 7.58013 7.69185 7.75373 7.90362 7.91757 8.10333 8.43360 9.29170 9.89920 10.54948 11.45381 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010569 B = 0.002610 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.688212 B =10725.796602 C =12782.154418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C -0.012 4.012 3 Si 0.914 3.086 4 H -0.290 1.290 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.219 4.219 8 H 0.076 0.924 9 N -0.603 5.603 10 C 0.152 3.848 11 C -0.130 4.130 12 C -0.029 4.029 13 H 0.088 0.912 14 C 0.121 3.879 15 N -0.277 5.277 16 N -0.481 5.481 17 H 0.438 0.562 18 C 0.074 3.926 19 C -0.263 4.263 20 C 0.203 3.797 21 N -0.723 5.723 22 C 0.510 3.490 23 O -0.531 6.531 24 C -0.066 4.066 25 C -0.007 4.007 26 C -0.004 4.004 27 N -0.494 5.494 28 C 0.184 3.816 29 N -0.565 5.565 30 H 0.416 0.584 31 C 0.148 3.852 32 H 0.252 0.748 33 H 0.013 0.987 34 H 0.108 0.892 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.174 0.826 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.402 0.598 41 H 0.121 0.879 42 H 0.099 0.901 43 H 0.169 0.831 44 H 0.206 0.794 45 H 0.028 0.972 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.488 -25.651 -1.381 26.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.207 4.207 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.347 4.347 8 H 0.094 0.906 9 N -0.329 5.329 10 C 0.027 3.973 11 C -0.170 4.170 12 C -0.050 4.050 13 H 0.106 0.894 14 C -0.047 4.047 15 N -0.098 5.098 16 N -0.186 5.186 17 H 0.282 0.718 18 C -0.075 4.075 19 C -0.275 4.275 20 C 0.079 3.921 21 N -0.375 5.375 22 C 0.295 3.705 23 O -0.407 6.407 24 C -0.107 4.107 25 C -0.123 4.123 26 C -0.152 4.152 27 N -0.213 5.213 28 C -0.100 4.100 29 N -0.168 5.168 30 H 0.254 0.746 31 C 0.022 3.978 32 H 0.062 0.938 33 H 0.031 0.969 34 H 0.125 0.875 35 H 0.084 0.916 36 H 0.075 0.925 37 H 0.191 0.809 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.236 0.764 41 H 0.139 0.861 42 H 0.117 0.883 43 H 0.187 0.813 44 H 0.223 0.777 45 H 0.046 0.954 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -5.865 -24.622 -0.890 25.326 hybrid contribution 0.433 -0.525 -1.319 1.484 sum -5.432 -25.147 -2.209 25.822 Atomic orbital electron populations 1.69774 1.04838 1.24763 1.57880 1.24762 0.95729 0.97620 1.02626 0.86153 0.78392 0.83115 0.77855 1.21600 1.21239 1.21260 1.19029 0.90472 0.82460 1.42742 0.90627 1.44464 1.01957 0.99602 1.86829 1.21995 0.84747 0.92447 0.98083 1.23110 0.94930 0.98363 1.00572 1.20761 0.98346 0.90158 0.95692 0.89365 1.22287 0.96244 0.94385 0.91800 1.77554 1.22511 0.97396 1.12347 1.46389 1.55928 1.05193 1.11135 0.71799 1.22349 1.00274 0.96910 0.87975 1.19944 1.18251 0.93063 0.96285 1.19372 0.80323 1.00416 0.91950 1.46169 1.08477 1.66402 1.16453 1.20479 0.90538 0.77466 0.81989 1.90758 1.58707 1.48341 1.42916 1.20046 0.94150 1.04167 0.92386 1.20441 1.10730 0.84303 0.96798 1.22099 1.05730 0.99952 0.87465 1.70286 1.18910 0.99930 1.32128 1.24922 1.05429 0.98558 0.81104 1.43178 1.55187 1.08597 1.09840 0.74637 1.21267 0.93080 0.85382 0.98107 0.93751 0.96930 0.87463 0.91558 0.92501 0.80930 0.91232 0.90403 0.76391 0.86109 0.88317 0.81341 0.77702 0.95356 0.96075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.19 10.08 55.49 0.56 -26.63 16 2 C -0.01 -0.35 5.49 -17.43 -0.10 -0.45 16 3 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 4 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.22 -6.25 10.27 -15.06 -0.15 -6.40 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 9 N -0.60 -15.82 3.39 -169.93 -0.58 -16.39 16 10 C 0.15 3.71 5.91 -2.41 -0.01 3.70 16 11 C -0.13 -2.46 6.53 -24.46 -0.16 -2.62 16 12 C -0.03 -0.50 3.36 -89.94 -0.30 -0.80 16 13 H 0.09 1.46 7.32 -51.92 -0.38 1.08 16 14 C 0.12 1.82 5.76 -82.40 -0.47 1.34 16 15 N -0.28 -4.29 12.33 33.67 0.42 -3.87 16 16 N -0.48 -4.99 7.36 30.45 0.22 -4.77 16 17 H 0.44 3.06 8.96 -182.61 -1.64 1.43 16 18 C 0.07 0.66 11.90 -17.22 -0.20 0.45 16 19 C -0.26 -2.99 5.47 -105.05 -0.57 -3.56 16 20 C 0.20 2.17 5.65 -5.19 -0.03 2.14 16 21 N -0.72 -6.59 5.55 -61.47 -0.34 -6.93 16 22 C 0.51 5.30 7.82 -10.99 -0.09 5.22 16 23 O -0.53 -7.93 16.03 5.55 0.09 -7.84 16 24 C -0.07 -0.47 6.26 -29.04 -0.18 -0.66 16 25 C -0.01 -0.07 5.73 -81.60 -0.47 -0.54 16 26 C 0.00 -0.05 11.79 -17.81 -0.21 -0.26 16 27 N -0.49 -6.32 11.25 -14.66 -0.16 -6.49 16 28 C 0.18 1.64 13.04 -90.37 -1.18 0.46 16 29 N -0.56 -4.30 6.15 -10.29 -0.06 -4.37 16 30 H 0.42 1.71 8.96 -40.82 -0.37 1.35 16 31 C 0.15 3.24 6.83 -3.06 -0.02 3.22 16 32 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.11 2.95 5.86 -51.93 -0.30 2.65 16 35 H 0.07 1.32 7.88 -51.93 -0.41 0.91 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 37 H 0.17 0.83 8.06 -52.49 -0.42 0.40 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.00 7.77 -51.93 -0.40 0.60 16 40 H 0.40 2.97 8.46 -40.82 -0.35 2.62 16 41 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.17 1.92 8.06 -52.49 -0.42 1.49 16 44 H 0.21 0.96 8.06 -52.48 -0.42 0.54 16 45 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 46 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -39.00 386.87 -10.80 -49.80 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -7.59 Total: 2.97 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -4.15 Total: 1.23 kcal Atomic # 7 Polarization: -69.50 SS G_CDS: 0.05 Total: -69.45 kcal Atomic # 8 Polarization: -7.93 SS G_CDS: 0.09 Total: -7.84 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.00 -10.80 -49.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130426430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.580 kcal (2) G-P(sol) polarization free energy of solvation -38.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds