Wall clock time and date at job start Wed Apr 1 2020 04:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48496 * 109.47187 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47141 * 119.99967 * 3 2 1 6 6 H 1.48498 * 109.47018 * 240.00013 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.47426 * 125.64675 * 359.68852 * 9 7 2 11 11 C 1.55131 * 104.71847 * 155.81671 * 10 9 7 12 12 C 1.55153 * 101.48647 * 37.29562 * 11 10 9 13 13 H 1.09008 * 110.71987 * 82.69509 * 12 11 10 14 14 C 1.50705 * 110.72354 * 205.96741 * 12 11 10 15 15 N 1.30834 * 125.89692 * 54.99718 * 14 12 11 16 16 N 1.40085 * 108.20595 * 179.97438 * 15 14 12 17 17 H 0.97000 * 126.04122 * 180.02562 * 16 15 14 18 18 C 1.34953 * 107.92392 * 359.97438 * 16 15 14 19 19 C 1.35313 * 107.74485 * 359.75378 * 18 16 15 20 20 C 1.50705 * 126.04209 * 180.27076 * 19 18 16 21 21 N 1.46500 * 109.47169 * 260.14446 * 20 19 18 22 22 C 1.34774 * 120.00082 * 179.97438 * 21 20 19 23 23 O 1.21289 * 119.99849 * 359.97438 * 22 21 20 24 24 C 1.50692 * 120.00261 * 179.97438 * 22 21 20 25 25 C 1.50696 * 109.47412 * 180.02562 * 24 22 21 26 26 C 1.34671 * 126.59282 * 85.02412 * 25 24 22 27 27 N 1.34129 * 108.02027 * 179.97438 * 26 25 24 28 28 C 1.30496 * 109.25878 * 0.02562 * 27 26 25 29 29 N 1.35047 * 108.70174 * 359.76614 * 28 27 26 30 30 H 0.96994 * 126.40372 * 180.26755 * 29 28 27 31 31 C 1.47026 * 125.64697 * 179.97438 * 9 7 2 32 32 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 33 33 H 1.08994 * 110.36510 * 274.74946 * 10 9 7 34 34 H 1.09001 * 110.36249 * 37.07349 * 10 9 7 35 35 H 1.08999 * 111.19687 * 279.19300 * 11 10 9 36 36 H 1.08999 * 110.93608 * 155.29072 * 11 10 9 37 37 H 1.08001 * 126.12764 * 179.97438 * 18 16 15 38 38 H 1.09005 * 109.46616 * 20.13805 * 20 19 18 39 39 H 1.08997 * 109.47079 * 140.13966 * 20 19 18 40 40 H 0.97004 * 119.99881 * 359.97438 * 21 20 19 41 41 H 1.09004 * 109.47627 * 299.99924 * 24 22 21 42 42 H 1.08997 * 109.47047 * 60.00264 * 24 22 21 43 43 H 1.07995 * 125.99057 * 359.96359 * 26 25 24 44 44 H 1.08007 * 125.65243 * 179.97438 * 28 27 26 45 45 H 1.09003 * 109.87851 * 300.43791 * 31 9 7 46 46 H 1.08997 * 109.87950 * 61.60369 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 1.2852 2.7465 -0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 -0.1415 -2.5331 0.0065 11 6 -0.4016 -3.9325 -0.6105 12 6 0.7785 -4.7524 -0.0255 13 1 0.5462 -5.0977 0.9820 14 6 1.1180 -5.9139 -0.9238 15 7 1.4103 -5.8392 -2.1969 16 7 1.6635 -7.1351 -2.6646 17 1 1.9048 -7.3773 -3.5724 18 6 1.5135 -7.9872 -1.6289 19 6 1.1818 -7.2570 -0.5389 20 6 0.9235 -7.7962 0.8445 21 7 -0.5210 -7.8978 1.0671 22 6 -0.9907 -8.3593 2.2430 23 8 -0.2176 -8.6909 3.1167 24 6 -2.4765 -8.4633 2.4722 25 6 -2.7349 -9.0025 3.8555 26 6 -2.7903 -8.2905 4.9973 27 7 -3.0413 -9.1402 6.0043 28 6 -3.1430 -10.3517 5.5301 29 7 -2.9631 -10.3095 4.1923 30 1 -2.9895 -11.0645 3.5839 31 6 1.9319 -3.7275 0.0005 32 1 -0.4850 0.8401 0.0004 33 1 -0.5228 -2.4888 1.0266 34 1 -0.6018 -1.7576 -0.6056 35 1 -0.3522 -3.8987 -1.6989 36 1 -1.3589 -4.3332 -0.2772 37 1 1.6394 -9.0593 -1.6629 38 1 1.3761 -8.7832 0.9401 39 1 1.3586 -7.1237 1.5836 40 1 -1.1392 -7.6329 0.3681 41 1 -2.9289 -7.4761 2.3772 42 1 -2.9120 -9.1352 1.7328 43 1 -2.6560 -7.2227 5.0865 44 1 -3.3418 -11.2404 6.1108 45 1 2.5579 -3.8510 -0.8833 46 1 2.5289 -3.8641 0.9022 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130426430.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:27 Heat of formation + Delta-G solvation = 96.316584 kcal Electronic energy + Delta-G solvation = -29316.059003 eV Core-core repulsion = 25242.878620 eV Total energy + Delta-G solvation = -4073.180382 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.91567 -42.33043 -40.36090 -39.00741 -35.96684 -34.88733 -33.79348 -32.94165 -32.64541 -31.52675 -30.88516 -29.12488 -28.28880 -26.63416 -26.14234 -23.40322 -22.53862 -22.10861 -22.01792 -21.40060 -21.14406 -20.03238 -19.16513 -18.84213 -18.58357 -17.86550 -16.88615 -16.71218 -16.48241 -16.24079 -15.74158 -15.67645 -15.41778 -15.25101 -14.84282 -14.45760 -14.40120 -14.37861 -14.05567 -13.96882 -13.74612 -13.53374 -13.38555 -13.27919 -12.95030 -12.85284 -12.68133 -12.30225 -12.04604 -11.88240 -11.71032 -11.62282 -11.16483 -11.07441 -10.92387 -10.84794 -10.72937 -10.28196 -9.97530 -9.55976 -9.26217 -8.86727 -7.75866 -5.20344 0.96951 1.10512 1.45739 1.49578 1.55686 1.57485 1.74334 2.04371 2.23085 2.32890 2.50624 2.70563 3.32469 3.56988 3.71869 3.78248 3.86441 3.99977 4.05018 4.13736 4.17086 4.21045 4.23661 4.37517 4.57804 4.61406 4.69743 4.70054 4.71707 4.72903 4.83106 4.90627 5.07003 5.08512 5.16557 5.30399 5.34737 5.46659 5.53626 5.59690 5.69275 5.82116 5.82985 6.33342 6.52594 6.62497 6.70030 6.79458 7.12610 7.19163 7.36826 7.79337 8.43385 9.25512 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010569 B = 0.002610 C = 0.002190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2648.688212 B =10725.796602 C =12782.154418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.066 4.066 3 Si 0.981 3.019 4 H -0.290 1.290 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.075 0.925 9 N -0.625 5.625 10 C 0.153 3.847 11 C -0.111 4.111 12 C -0.010 4.010 13 H 0.097 0.903 14 C 0.105 3.895 15 N -0.325 5.325 16 N -0.466 5.466 17 H 0.454 0.546 18 C 0.107 3.893 19 C -0.271 4.271 20 C 0.209 3.791 21 N -0.710 5.710 22 C 0.511 3.489 23 O -0.582 6.582 24 C -0.059 4.059 25 C -0.002 4.002 26 C -0.047 4.047 27 N -0.544 5.544 28 C 0.188 3.812 29 N -0.552 5.552 30 H 0.435 0.565 31 C 0.145 3.855 32 H 0.248 0.752 33 H -0.007 1.007 34 H 0.073 0.927 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.225 0.775 38 H 0.084 0.916 39 H 0.049 0.951 40 H 0.414 0.586 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.159 0.841 44 H 0.244 0.756 45 H 0.017 0.983 46 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.768 -28.870 -2.921 29.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.258 4.258 3 Si 0.808 3.192 4 H -0.216 1.216 5 H -0.205 1.205 6 H -0.204 1.204 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.351 5.351 10 C 0.028 3.972 11 C -0.150 4.150 12 C -0.030 4.030 13 H 0.115 0.885 14 C -0.062 4.062 15 N -0.148 5.148 16 N -0.174 5.174 17 H 0.301 0.699 18 C -0.043 4.043 19 C -0.283 4.283 20 C 0.085 3.915 21 N -0.363 5.363 22 C 0.298 3.702 23 O -0.462 6.462 24 C -0.100 4.100 25 C -0.119 4.119 26 C -0.195 4.195 27 N -0.264 5.264 28 C -0.096 4.096 29 N -0.157 5.157 30 H 0.276 0.724 31 C 0.019 3.981 32 H 0.058 0.942 33 H 0.010 0.990 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.110 0.890 37 H 0.242 0.758 38 H 0.102 0.898 39 H 0.068 0.932 40 H 0.250 0.750 41 H 0.154 0.846 42 H 0.158 0.842 43 H 0.176 0.824 44 H 0.260 0.740 45 H 0.035 0.965 46 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -6.152 -27.865 -2.493 28.645 hybrid contribution 0.573 0.395 -0.878 1.120 sum -5.579 -27.471 -3.371 28.233 Atomic orbital electron populations 1.70034 1.06065 1.25112 1.58435 1.25617 0.96720 1.00852 1.02619 0.85124 0.77174 0.78764 0.78092 1.21555 1.20518 1.20435 1.19384 0.90872 0.83951 1.42877 0.90719 1.44781 1.02960 1.00605 1.86744 1.21801 0.83811 0.94931 0.96617 1.22875 0.97353 0.95211 0.99547 1.20460 0.95545 0.90063 0.96959 0.88490 1.21866 0.97917 0.94778 0.91676 1.77448 1.24030 1.00527 1.12837 1.46360 1.54805 1.03871 1.12364 0.69929 1.23025 0.96599 0.98619 0.86048 1.19917 1.19437 0.91608 0.97306 1.19221 0.81092 1.00365 0.90847 1.46062 1.08173 1.65557 1.16470 1.20964 0.91519 0.76336 0.81377 1.90746 1.60207 1.50750 1.44490 1.20139 0.91955 1.05987 0.91920 1.20687 1.09213 0.84813 0.97189 1.22213 1.08227 1.00173 0.88857 1.70205 1.21007 1.01678 1.33513 1.25643 1.03575 0.98577 0.81828 1.43148 1.54116 1.08571 1.09854 0.72416 1.21372 0.94655 0.84921 0.97130 0.94228 0.98952 0.90890 0.92528 0.88967 0.75824 0.89818 0.93234 0.74995 0.84572 0.84225 0.82383 0.74011 0.96477 0.96497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.68 10.08 21.65 0.22 -57.46 16 2 C -0.07 -3.85 5.49 84.86 0.47 -3.38 16 3 Si 0.98 47.16 29.55 68.60 2.03 49.18 16 4 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 5 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 6 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 7 C -0.24 -14.28 10.27 84.03 0.86 -13.42 16 8 H 0.07 4.27 7.83 -2.91 -0.02 4.25 16 9 N -0.62 -34.05 3.39 -691.55 -2.35 -36.40 16 10 C 0.15 7.76 5.91 86.93 0.51 8.28 16 11 C -0.11 -4.18 6.53 32.06 0.21 -3.97 16 12 C -0.01 -0.33 3.36 -10.35 -0.03 -0.37 16 13 H 0.10 3.18 7.32 -2.38 -0.02 3.16 16 14 C 0.10 2.98 5.76 43.10 0.25 3.23 16 15 N -0.33 -9.59 12.33 -47.38 -0.58 -10.17 16 16 N -0.47 -8.10 7.36 -57.59 -0.42 -8.52 16 17 H 0.45 4.72 8.96 -213.33 -1.91 2.81 16 18 C 0.11 1.40 11.90 83.54 0.99 2.39 16 19 C -0.27 -5.34 5.47 -20.14 -0.11 -5.45 16 20 C 0.21 3.98 5.65 85.63 0.48 4.46 16 21 N -0.71 -11.02 5.55 -466.78 -2.59 -13.61 16 22 C 0.51 9.59 7.82 87.65 0.69 10.28 16 23 O -0.58 -16.97 16.03 -3.06 -0.05 -17.02 16 24 C -0.06 -0.69 6.26 29.10 0.18 -0.50 16 25 C 0.00 -0.04 5.73 40.95 0.23 0.20 16 26 C -0.05 -1.19 11.79 83.52 0.98 -0.20 16 27 N -0.54 -14.10 11.25 -200.31 -2.25 -16.35 16 28 C 0.19 3.08 13.04 180.26 2.35 5.43 16 29 N -0.55 -7.20 6.15 -186.48 -1.15 -8.35 16 30 H 0.43 2.18 8.96 -92.71 -0.83 1.35 16 31 C 0.15 6.53 6.83 86.73 0.59 7.13 16 32 H 0.25 14.62 8.31 -92.71 -0.77 13.84 16 33 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 34 H 0.07 4.21 5.86 -2.39 -0.01 4.20 16 35 H 0.06 2.25 7.88 -2.39 -0.02 2.24 16 36 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.23 0.60 8.06 -2.91 -0.02 0.57 16 38 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.05 1.24 7.77 -2.39 -0.02 1.22 16 40 H 0.41 4.61 8.46 -92.71 -0.78 3.82 16 41 H 0.14 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.14 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.16 3.94 8.06 -2.91 -0.02 3.92 16 44 H 0.24 1.66 8.06 -2.91 -0.02 1.63 16 45 H 0.02 0.81 7.67 -2.39 -0.02 0.79 16 46 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 Total: -1.00 -91.32 386.87 -0.96 -92.28 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -2.47 Total: 12.30 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: 8.66 Total: 14.11 kcal Atomic # 7 Polarization: -141.73 SS G_CDS: -9.13 Total: -150.85 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.05 Total: -17.02 kcal Atomic # 14 Polarization: 47.16 SS G_CDS: 2.03 Total: 49.18 kcal Total: -91.32 -0.96 -92.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130426430.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 188.599 kcal (2) G-P(sol) polarization free energy of solvation -91.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds