Wall clock time and date at job start Wed Apr 1 2020 03:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 F 1.39905 * 109.47157 * 240.00388 * 2 1 3 5 5 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 6 6 C 1.52997 * 109.47448 * 184.99813 * 5 2 1 7 7 N 1.46910 * 109.47281 * 179.97438 * 6 5 2 8 8 C 1.46843 * 110.99528 * 66.05101 * 7 6 5 9 9 C 1.50145 * 110.27326 * 174.31730 * 8 7 6 10 10 C 1.29822 * 123.27929 * 342.91928 * 9 8 7 11 11 C 1.50700 * 118.55010 * 180.39820 * 10 9 8 12 12 C 1.52998 * 109.47474 * 95.00319 * 11 10 9 13 13 N 1.46493 * 109.47783 * 180.02562 * 12 11 10 14 14 C 1.34774 * 120.00684 * 179.97438 * 13 12 11 15 15 O 1.21284 * 119.99360 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00375 * 179.97438 * 14 13 12 17 17 S 1.81001 * 109.47041 * 179.97438 * 16 14 13 18 18 C 1.76204 * 100.00051 * 179.97438 * 17 16 14 19 19 H 1.08002 * 119.99574 * 0.02562 * 18 17 16 20 20 C 1.38800 * 119.99979 * 180.02562 * 18 17 16 21 21 N 1.31625 * 120.00086 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99647 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47118 * 90.00210 * 22 20 18 24 24 H 1.48496 * 109.47102 * 210.00017 * 22 20 18 25 25 H 1.48499 * 109.47404 * 330.00225 * 22 20 18 26 26 C 1.50302 * 122.89862 * 0.37791 * 10 9 8 27 27 C 1.47234 * 110.99847 * 188.97730 * 7 6 5 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.09001 * 109.47563 * 305.00337 * 5 2 1 32 32 H 1.09004 * 109.47313 * 64.99993 * 5 2 1 33 33 H 1.09000 * 109.47346 * 300.00002 * 6 5 2 34 34 H 1.09007 * 109.46964 * 60.00529 * 6 5 2 35 35 H 1.09003 * 109.33869 * 294.55899 * 8 7 6 36 36 H 1.08997 * 109.34089 * 54.06680 * 8 7 6 37 37 H 1.08000 * 118.35565 * 162.95079 * 9 8 7 38 38 H 1.08997 * 109.47175 * 215.00294 * 11 10 9 39 39 H 1.09002 * 109.47153 * 335.00273 * 11 10 9 40 40 H 1.09006 * 109.47148 * 300.00262 * 12 11 10 41 41 H 1.09002 * 109.46968 * 59.99840 * 12 11 10 42 42 H 0.97007 * 119.99840 * 0.02562 * 13 12 11 43 43 H 1.08997 * 109.47175 * 300.00006 * 16 14 13 44 44 H 1.09002 * 109.47153 * 59.99985 * 16 14 13 45 45 H 0.96997 * 120.00339 * 180.02562 * 21 20 18 46 46 H 1.09009 * 109.43062 * 103.59492 * 26 10 9 47 47 H 1.09000 * 109.43612 * 223.44562 * 26 10 9 48 48 H 1.09004 * 109.64331 * 287.50304 * 27 7 6 49 49 H 1.09005 * 109.63927 * 48.11993 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 9 1.9963 -0.6594 -1.1424 5 6 2.0400 -0.7212 1.2491 6 6 3.5648 -0.6133 1.3135 7 7 4.0545 -1.3054 2.5133 8 6 3.8101 -2.7505 2.4237 9 6 4.4378 -3.4576 3.5901 10 6 5.3495 -2.9204 4.3422 11 6 5.9136 -3.7309 5.4806 12 6 7.2006 -4.4221 5.0259 13 7 7.7487 -5.2105 6.1323 14 6 8.8874 -5.9108 5.9615 15 8 9.4587 -5.8879 4.8919 16 6 9.4515 -6.7214 7.0999 17 16 10.9732 -7.5404 6.5614 18 6 11.4040 -8.3906 8.0434 19 1 10.7777 -8.3012 8.9187 20 6 12.5483 -9.1751 8.0858 21 7 13.3118 -9.2835 7.0192 22 14 13.0046 -10.0769 9.6568 23 1 12.3810 -11.4246 9.6528 24 1 14.4809 -10.2148 9.7373 25 1 12.5145 -9.3082 10.8290 26 6 5.8674 -1.5259 4.1274 27 6 5.4880 -1.0442 2.7250 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 1.6054 -0.2618 2.1369 32 1 1.7517 -1.7715 1.2055 33 1 3.9995 -1.0728 0.4258 34 1 3.8532 0.4370 1.3573 35 1 2.7360 -2.9357 2.4250 36 1 4.2386 -3.1323 1.4971 37 1 4.1151 -4.4636 3.8142 38 1 6.1322 -3.0730 6.3217 39 1 5.1861 -4.4826 5.7869 40 1 6.9820 -5.0801 4.1848 41 1 7.9280 -3.6704 4.7196 42 1 7.2915 -5.2291 6.9877 43 1 9.6707 -6.0634 7.9408 44 1 8.7238 -7.4728 7.4065 45 1 14.1113 -9.8320 7.0487 46 1 5.4306 -0.8583 4.8703 47 1 6.9525 -1.5220 4.2311 48 1 6.0728 -1.5860 1.9816 49 1 5.6821 0.0251 2.6398 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001159332678.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:09 Heat of formation + Delta-G solvation = -113.311880 kcal Electronic energy + Delta-G solvation = -26298.439544 eV Core-core repulsion = 22299.400228 eV Total energy + Delta-G solvation = -3999.039316 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.59716 -40.72394 -40.18684 -37.27053 -35.67200 -34.58544 -34.17581 -31.92527 -31.79486 -30.38125 -28.77796 -27.65706 -25.89634 -24.39271 -23.61492 -22.49522 -21.89724 -21.79930 -19.84676 -18.62269 -17.84597 -17.62228 -17.31003 -16.99677 -16.87647 -16.82019 -16.38578 -16.09294 -15.84524 -15.68189 -15.47843 -15.14575 -14.89121 -14.69035 -14.48576 -14.14133 -14.05469 -13.72536 -13.60400 -13.41798 -13.17154 -13.16187 -13.08468 -12.95288 -12.88457 -12.73990 -12.58962 -12.32964 -12.02594 -11.96390 -11.73182 -11.61451 -11.46576 -11.35600 -11.14118 -10.95454 -10.27625 -10.13827 -9.78711 -9.35345 -8.67129 -8.34491 -6.12951 1.18623 1.30276 1.42970 1.48391 1.58625 1.60483 2.26924 2.32688 2.80387 2.99844 3.32185 3.63243 3.72375 3.80636 3.84479 3.88863 3.97984 4.03217 4.10745 4.13860 4.22637 4.31267 4.33577 4.35784 4.41219 4.49958 4.51185 4.56394 4.58711 4.62017 4.69528 4.84455 4.86244 4.90527 4.91388 5.03335 5.10309 5.11634 5.19070 5.22865 5.29405 5.41754 5.42393 5.51478 5.95782 6.02811 6.15522 6.20011 6.51188 7.06804 7.24470 8.74871 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.039821 B = 0.001333 C = 0.001323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.970906 B =21002.961224 C =21166.710585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.081 3.919 3 H 0.098 0.902 4 F -0.237 7.237 5 C -0.136 4.136 6 C 0.051 3.949 7 N -0.533 5.533 8 C 0.082 3.918 9 C -0.164 4.164 10 C -0.114 4.114 11 C -0.083 4.083 12 C 0.129 3.871 13 N -0.712 5.712 14 C 0.531 3.469 15 O -0.569 6.569 16 C -0.129 4.129 17 S -0.155 6.155 18 C -0.547 4.547 19 H 0.084 0.916 20 C 0.014 3.986 21 N -0.912 5.912 22 Si 0.999 3.001 23 H -0.268 1.268 24 H -0.278 1.278 25 H -0.257 1.257 26 C -0.079 4.079 27 C 0.049 3.951 28 H 0.092 0.908 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.068 0.932 33 H 0.025 0.975 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.035 0.965 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.418 0.582 43 H 0.112 0.888 44 H 0.111 0.889 45 H 0.271 0.729 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.025 0.975 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.983 22.133 -6.706 37.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.045 3.955 3 H 0.116 0.884 4 F -0.218 7.218 5 C -0.174 4.174 6 C -0.077 4.077 7 N -0.257 5.257 8 C -0.046 4.046 9 C -0.182 4.182 10 C -0.115 4.115 11 C -0.121 4.121 12 C 0.005 3.995 13 N -0.367 5.367 14 C 0.317 3.683 15 O -0.447 6.447 16 C -0.280 4.280 17 S 0.072 5.928 18 C -0.695 4.695 19 H 0.102 0.898 20 C -0.191 4.191 21 N -0.549 5.549 22 Si 0.821 3.179 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.181 1.181 26 C -0.116 4.116 27 C -0.079 4.079 28 H 0.111 0.889 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.043 0.957 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.053 0.947 37 H 0.136 0.864 38 H 0.111 0.889 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.255 0.745 43 H 0.130 0.870 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.095 0.905 48 H 0.044 0.956 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -28.162 22.290 -8.179 36.835 hybrid contribution 0.362 -1.247 1.140 1.728 sum -27.800 21.044 -7.038 35.569 Atomic orbital electron populations 1.22360 0.93085 1.03638 1.04395 1.21809 0.95842 0.96765 0.81125 0.88404 1.92788 1.90639 1.83931 1.54428 1.22163 0.95060 1.01998 0.98183 1.22191 0.95574 0.99702 0.90207 1.62503 1.16609 1.08893 1.37683 1.21005 1.01225 0.86993 0.95358 1.22224 0.98649 1.00097 0.97241 1.20846 0.97349 0.96217 0.97097 1.20812 0.94951 0.98905 0.97410 1.21297 0.95335 0.93833 0.89004 1.45758 1.24894 1.48945 1.17058 1.20118 0.80755 0.79111 0.88285 1.90693 1.60728 1.64285 1.29026 1.23375 1.01854 1.02378 1.00418 1.85606 1.25833 1.59980 1.21344 1.23216 1.13386 1.34175 0.98675 0.89816 1.26129 0.94936 0.96791 1.01223 1.70184 1.14908 1.38861 1.30906 0.84946 0.77464 0.78343 0.77185 1.19310 1.20318 1.18103 1.20508 1.00687 0.93430 0.96976 1.22238 0.87515 1.01609 0.96505 0.88869 0.91909 0.91334 0.88005 0.91304 0.95714 0.89372 0.88732 0.94679 0.86445 0.88890 0.89365 0.93219 0.92668 0.74470 0.87021 0.87088 0.91997 0.89208 0.90450 0.95631 0.89018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.07 9.65 71.98 0.69 -0.38 16 2 C 0.08 0.72 3.96 30.59 0.12 0.84 16 3 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 4 F -0.24 -3.85 16.76 44.97 0.75 -3.10 16 5 C -0.14 -1.22 4.90 30.59 0.15 -1.07 16 6 C 0.05 0.60 4.87 86.30 0.42 1.02 16 7 N -0.53 -7.47 4.72 -900.93 -4.25 -11.73 16 8 C 0.08 1.22 5.26 85.39 0.45 1.67 16 9 C -0.16 -2.57 9.50 26.69 0.25 -2.32 16 10 C -0.11 -1.77 5.15 -15.40 -0.08 -1.85 16 11 C -0.08 -1.20 5.38 29.85 0.16 -1.04 16 12 C 0.13 2.89 5.66 86.38 0.49 3.38 16 13 N -0.71 -17.71 5.56 -463.07 -2.57 -20.28 16 14 C 0.53 19.78 7.85 87.66 0.69 20.47 16 15 O -0.57 -26.98 15.86 -3.04 -0.05 -27.02 16 16 C -0.13 -5.10 6.16 71.24 0.44 -4.66 16 17 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 18 C -0.55 -31.30 9.50 67.95 0.65 -30.65 16 19 H 0.08 4.43 7.80 -2.91 -0.02 4.40 16 20 C 0.01 0.79 5.49 84.86 0.47 1.26 16 21 N -0.91 -56.33 13.22 21.65 0.29 -56.04 16 22 Si 1.00 43.56 29.55 68.60 2.03 45.58 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 25 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 26 C -0.08 -1.11 6.04 29.74 0.18 -0.93 16 27 C 0.05 0.70 5.59 86.26 0.48 1.19 16 28 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.72 6.67 -2.39 -0.02 0.71 16 33 H 0.02 0.37 7.85 -2.39 -0.02 0.35 16 34 H 0.09 0.84 7.94 -2.38 -0.02 0.82 16 35 H 0.09 1.20 6.73 -2.39 -0.02 1.19 16 36 H 0.04 0.60 8.06 -2.39 -0.02 0.58 16 37 H 0.12 1.68 7.81 -2.91 -0.02 1.66 16 38 H 0.09 1.09 8.12 -2.39 -0.02 1.07 16 39 H 0.09 1.08 7.85 -2.39 -0.02 1.06 16 40 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 41 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.42 7.15 8.47 -92.70 -0.79 6.37 16 43 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 44 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 45 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.09 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 48 H 0.03 0.44 8.08 -2.39 -0.02 0.42 16 49 H 0.09 1.05 7.92 -2.38 -0.02 1.03 16 Total: -1.00 -78.28 413.69 0.73 -77.55 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.14 Total: 17.94 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: 5.56 Total: -13.08 kcal Atomic # 7 Polarization: -81.51 SS G_CDS: -6.54 Total: -88.05 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -0.05 Total: -27.02 kcal Atomic # 9 Polarization: -3.85 SS G_CDS: 0.75 Total: -3.10 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 2.03 Total: 45.58 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -78.28 0.73 -77.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001159332678.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.758 kcal (2) G-P(sol) polarization free energy of solvation -78.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds