Wall clock time and date at job start Wed Apr 1 2020 04:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86809 * 119.99920 * 2 1 4 4 H 1.48495 * 109.47127 * 269.99630 * 3 2 1 5 5 H 1.48503 * 109.46672 * 29.99793 * 3 2 1 6 6 H 1.48502 * 109.47240 * 149.99145 * 3 2 1 7 7 C 1.38812 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99726 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00163 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99977 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47110 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47110 * 179.97438 * 11 10 9 13 13 C 1.46499 * 120.00123 * 269.99619 * 12 11 10 14 14 C 1.53000 * 109.47268 * 270.00262 * 13 12 11 15 15 C 1.50703 * 109.47445 * 179.97438 * 14 13 12 16 16 C 1.38233 * 119.99803 * 269.73051 * 15 14 13 17 17 C 1.38228 * 119.99918 * 179.76782 * 16 15 14 18 18 C 1.38239 * 119.99787 * 0.49775 * 17 16 15 19 19 C 1.38228 * 119.99949 * 359.75115 * 18 17 16 20 20 C 1.38230 * 119.99892 * 89.99613 * 15 14 13 21 21 C 1.34779 * 120.00169 * 89.99951 * 12 11 10 22 22 O 1.21282 * 119.99922 * 359.97438 * 21 12 11 23 23 C 1.50699 * 120.00037 * 179.97438 * 21 12 11 24 24 N 1.46506 * 109.46928 * 179.97438 * 23 21 12 25 25 C 1.34603 * 126.43535 * 124.99928 * 24 23 21 26 26 N 1.31073 * 106.67603 * 179.97438 * 25 24 23 27 27 N 1.28838 * 107.99186 * 0.02562 * 26 25 24 28 28 N 1.28739 * 109.39871 * 359.73566 * 27 26 25 29 29 H 0.96997 * 120.00271 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99936 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47349 * 60.00210 * 10 9 7 32 32 H 1.09005 * 109.47039 * 300.00035 * 10 9 7 33 33 H 1.08998 * 109.47682 * 59.99499 * 11 10 9 34 34 H 1.09005 * 109.46797 * 299.99692 * 11 10 9 35 35 H 1.09004 * 109.46865 * 29.99581 * 13 12 11 36 36 H 1.08998 * 109.47138 * 150.00131 * 13 12 11 37 37 H 1.09007 * 109.46973 * 300.00153 * 14 13 12 38 38 H 1.08998 * 109.47148 * 59.99875 * 14 13 12 39 39 H 1.08005 * 120.00076 * 359.97438 * 16 15 14 40 40 H 1.08001 * 120.00271 * 180.23035 * 17 16 15 41 41 H 1.08004 * 119.99858 * 179.72995 * 18 17 16 42 42 H 1.08008 * 119.99616 * 179.97438 * 19 18 17 43 43 H 1.08001 * 120.00066 * 0.02562 * 20 15 14 44 44 H 1.09004 * 109.47103 * 59.99751 * 23 21 12 45 45 H 1.09000 * 109.47247 * 299.99628 * 23 21 12 46 46 H 1.07999 * 126.65761 * 359.97088 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1911 0.0024 12 7 6.3489 -3.4598 0.0030 13 6 6.7142 -4.0942 1.2720 14 6 8.0906 -3.5937 1.7148 15 6 8.4661 -4.2457 3.0206 16 6 8.1243 -3.6438 4.2171 17 6 8.4645 -4.2443 5.4148 18 6 9.1555 -5.4415 5.4159 19 6 9.5018 -6.0408 4.2194 20 6 9.1571 -5.4429 3.0217 21 6 6.6869 -4.0435 -1.1639 22 8 6.3842 -3.5185 -2.2145 23 6 7.4410 -5.3482 -1.1633 24 7 7.6857 -5.7715 -2.5443 25 6 8.8802 -6.0656 -3.0906 26 7 8.6520 -6.3967 -4.3381 27 7 7.3837 -6.3099 -4.5473 28 7 6.7962 -5.9375 -3.4640 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0014 31 1 3.8493 -3.0421 -0.8891 32 1 3.8485 -3.0426 0.8909 33 1 5.8791 -1.6199 0.8927 34 1 5.8803 -1.6192 -0.8873 35 1 5.9741 -3.8409 2.0311 36 1 6.7456 -5.1759 1.1417 37 1 8.8307 -3.8469 0.9557 38 1 8.0592 -2.5120 1.8451 39 1 7.5885 -2.7060 4.2162 40 1 8.1942 -3.7759 6.3496 41 1 9.4252 -5.9085 6.3517 42 1 10.0421 -6.9760 4.2203 43 1 9.4283 -5.9108 2.0868 44 1 6.8518 -6.1081 -0.6497 45 1 8.3930 -5.2174 -0.6489 46 1 9.8402 -6.0346 -2.5968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162689149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:42 Heat of formation + Delta-G solvation = 138.482463 kcal Electronic energy + Delta-G solvation = -29242.503176 eV Core-core repulsion = 25171.151244 eV Total energy + Delta-G solvation = -4071.351933 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.34843 -40.52596 -39.59633 -36.81722 -35.71901 -34.99545 -33.31606 -32.63141 -31.65366 -31.30476 -30.07952 -29.08380 -27.62760 -24.46103 -24.27038 -24.01173 -23.02468 -22.99674 -21.58159 -21.41589 -19.71337 -18.29764 -17.94697 -17.61641 -17.22358 -16.76875 -16.40944 -16.12416 -15.69240 -15.54802 -15.43847 -14.52678 -14.30650 -14.15858 -14.03340 -13.83974 -13.71113 -13.59424 -13.45748 -13.08257 -12.92745 -12.67072 -12.55854 -12.28648 -11.78068 -11.77373 -11.47447 -11.39589 -11.32453 -11.27458 -11.25133 -11.18388 -10.81688 -10.59816 -10.22456 -10.10064 -9.63879 -9.33716 -9.31194 -8.94228 -8.83462 -7.29745 -5.79428 -3.16606 0.90101 0.98779 1.02850 1.54666 2.11465 2.12321 2.56751 3.33161 3.35268 3.38248 3.43238 3.63433 3.85453 3.92776 4.18187 4.34222 4.38607 4.50365 4.56130 4.58088 4.58644 4.68939 4.73934 4.90937 5.07036 5.09838 5.18440 5.19108 5.28562 5.36851 5.46299 5.50792 5.52526 5.59523 5.63043 5.65050 5.77580 5.79090 6.04102 6.12000 6.13317 6.19037 6.47690 6.58362 6.66546 6.99120 7.72492 7.95022 8.38357 8.44609 9.16210 9.88116 10.06285 11.38772 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.005974 B = 0.003624 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4686.046672 B = 7724.675284 C =11855.004702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.006 3.994 3 Si 0.886 3.114 4 H -0.283 1.283 5 H -0.290 1.290 6 H -0.278 1.278 7 C -0.246 4.246 8 H 0.090 0.910 9 N -0.753 5.753 10 C 0.146 3.854 11 C 0.105 3.895 12 N -0.599 5.599 13 C 0.106 3.894 14 C -0.101 4.101 15 C -0.083 4.083 16 C -0.112 4.112 17 C -0.116 4.116 18 C -0.123 4.123 19 C -0.119 4.119 20 C -0.118 4.118 21 C 0.500 3.500 22 O -0.498 6.498 23 C 0.095 3.905 24 N -0.300 5.300 25 C 0.156 3.844 26 N -0.307 5.307 27 N -0.078 5.078 28 N -0.057 5.057 29 H 0.260 0.740 30 H 0.361 0.639 31 H 0.033 0.967 32 H 0.027 0.973 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.084 0.916 39 H 0.125 0.875 40 H 0.123 0.877 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.120 0.880 44 H 0.136 0.864 45 H 0.140 0.860 46 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.674 -14.026 11.390 32.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.190 4.190 3 Si 0.716 3.284 4 H -0.209 1.209 5 H -0.216 1.216 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.108 0.892 9 N -0.399 5.399 10 C 0.018 3.982 11 C -0.017 4.017 12 N -0.332 5.332 13 C -0.017 4.017 14 C -0.139 4.139 15 C -0.083 4.083 16 C -0.130 4.130 17 C -0.134 4.134 18 C -0.141 4.141 19 C -0.137 4.137 20 C -0.136 4.136 21 C 0.284 3.716 22 O -0.370 6.370 23 C -0.031 4.031 24 N -0.103 5.103 25 C -0.143 4.143 26 N -0.154 5.154 27 N -0.072 5.072 28 N -0.043 5.043 29 H 0.070 0.930 30 H 0.193 0.807 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.102 0.898 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.138 0.862 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 25.430 -14.043 9.648 30.610 hybrid contribution 1.101 1.438 1.246 2.198 sum 26.531 -12.605 10.894 31.328 Atomic orbital electron populations 1.69696 1.05105 1.25908 1.57279 1.24673 0.95249 0.97228 1.01835 0.86537 0.79055 0.84922 0.77894 1.20945 1.21634 1.20420 1.19011 0.80291 0.94830 1.43407 0.89202 1.42528 1.04162 1.01816 1.91388 1.20883 0.88223 0.89918 0.99191 1.21825 0.92915 0.83429 1.03502 1.47801 1.56077 1.24431 1.04906 1.21779 0.96378 0.97474 0.86099 1.21081 0.96971 1.01705 0.94187 1.19716 0.98669 0.95374 0.94568 1.21154 0.99669 1.00201 0.91958 1.21211 0.98260 0.95727 0.98213 1.21197 0.98800 0.95926 0.98188 1.21149 1.00061 0.99935 0.92564 1.21014 0.99146 0.95323 0.98144 1.20074 0.80921 0.85946 0.84705 1.90900 1.52574 1.63189 1.30364 1.22124 1.05085 0.98301 0.77547 1.48205 1.05925 1.44157 1.11985 1.27702 0.93280 1.01442 0.91864 1.74983 1.09229 1.18797 1.12440 1.78709 0.98720 1.14317 1.15496 1.79105 1.17603 1.14108 0.93485 0.92962 0.80669 0.94913 0.95472 0.90035 0.89496 0.88546 0.90106 0.90867 0.89761 0.85705 0.85936 0.86159 0.86079 0.86184 0.84630 0.84251 0.74991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.48 13.97 55.49 0.78 -28.71 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 3 Si 0.89 22.03 27.74 -169.99 -4.71 17.32 16 4 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.34 6.52 56.52 0.37 -5.98 16 7 C -0.25 -7.02 10.47 -15.06 -0.16 -7.18 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.34 16 9 N -0.75 -17.79 5.41 -59.91 -0.32 -18.12 16 10 C 0.15 2.75 6.58 -4.04 -0.03 2.72 16 11 C 0.11 1.45 5.52 -4.04 -0.02 1.43 16 12 N -0.60 -5.97 2.47 -173.69 -0.43 -6.40 16 13 C 0.11 0.64 5.19 -4.04 -0.02 0.62 16 14 C -0.10 -0.49 5.67 -27.88 -0.16 -0.65 16 15 C -0.08 -0.46 5.13 -104.63 -0.54 -1.00 16 16 C -0.11 -0.73 9.70 -39.59 -0.38 -1.11 16 17 C -0.12 -0.73 10.05 -39.58 -0.40 -1.13 16 18 C -0.12 -0.71 10.05 -39.58 -0.40 -1.11 16 19 C -0.12 -0.62 10.05 -39.59 -0.40 -1.02 16 20 C -0.12 -0.57 9.70 -39.59 -0.38 -0.95 16 21 C 0.50 5.61 7.69 -10.99 -0.08 5.53 16 22 O -0.50 -8.50 15.29 5.56 0.08 -8.42 16 23 C 0.10 0.58 5.52 -5.19 -0.03 0.55 16 24 N -0.30 -3.00 3.19 -63.73 -0.20 -3.21 16 25 C 0.16 1.28 12.79 -90.38 -1.16 0.12 16 26 N -0.31 -3.97 12.36 29.59 0.37 -3.61 16 27 N -0.08 -1.24 13.43 60.35 0.81 -0.42 16 28 N -0.06 -0.85 12.30 60.35 0.74 -0.10 16 29 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 30 H 0.36 8.19 5.53 -40.82 -0.23 7.96 16 31 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.97 8.07 -51.93 -0.42 0.55 16 34 H 0.09 1.36 7.42 -51.93 -0.39 0.98 16 35 H 0.10 0.68 8.07 -51.93 -0.42 0.26 16 36 H 0.08 0.29 6.44 -51.93 -0.33 -0.04 16 37 H 0.07 0.23 7.16 -51.93 -0.37 -0.14 16 38 H 0.08 0.48 8.08 -51.93 -0.42 0.06 16 39 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 40 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.12 0.50 8.06 -52.48 -0.42 0.08 16 42 H 0.12 0.42 8.06 -52.48 -0.42 0.00 16 43 H 0.12 0.27 8.06 -52.49 -0.42 -0.15 16 44 H 0.14 0.52 7.40 -51.93 -0.38 0.13 16 45 H 0.14 0.14 7.12 -51.93 -0.37 -0.23 16 46 H 0.23 0.42 8.06 -52.49 -0.42 0.00 16 LS Contribution 392.81 15.07 5.92 5.92 Total: -1.00 -40.69 392.81 -7.53 -48.22 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -6.30 Total: 0.62 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -4.25 Total: -3.10 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 1.74 Total: -60.56 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.32 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -40.69 -7.53 -48.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162689149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.702 kcal (2) G-P(sol) polarization free energy of solvation -40.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds