Wall clock time and date at job start Wed Apr 1 2020 04:08:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86809 * 119.99920 * 2 1 4 4 H 1.48495 * 109.47127 * 269.99630 * 3 2 1 5 5 H 1.48503 * 109.46672 * 29.99793 * 3 2 1 6 6 H 1.48502 * 109.47240 * 149.99145 * 3 2 1 7 7 C 1.38812 * 120.00375 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99726 * 0.02562 * 7 2 1 9 9 N 1.36937 * 120.00163 * 180.02562 * 7 2 1 10 10 C 1.46500 * 119.99977 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47110 * 180.02562 * 10 9 7 12 12 N 1.46500 * 109.47110 * 179.97438 * 11 10 9 13 13 C 1.46499 * 120.00123 * 269.99619 * 12 11 10 14 14 C 1.53000 * 109.47268 * 270.00262 * 13 12 11 15 15 C 1.50703 * 109.47445 * 179.97438 * 14 13 12 16 16 C 1.38233 * 119.99803 * 269.73051 * 15 14 13 17 17 C 1.38228 * 119.99918 * 179.76782 * 16 15 14 18 18 C 1.38239 * 119.99787 * 0.49775 * 17 16 15 19 19 C 1.38228 * 119.99949 * 359.75115 * 18 17 16 20 20 C 1.38230 * 119.99892 * 89.99613 * 15 14 13 21 21 C 1.34779 * 120.00169 * 89.99951 * 12 11 10 22 22 O 1.21282 * 119.99922 * 359.97438 * 21 12 11 23 23 C 1.50699 * 120.00037 * 179.97438 * 21 12 11 24 24 N 1.46506 * 109.46928 * 179.97438 * 23 21 12 25 25 C 1.34603 * 126.43535 * 124.99928 * 24 23 21 26 26 N 1.31073 * 106.67603 * 179.97438 * 25 24 23 27 27 N 1.28838 * 107.99186 * 0.02562 * 26 25 24 28 28 N 1.28739 * 109.39871 * 359.73566 * 27 26 25 29 29 H 0.96997 * 120.00271 * 0.02562 * 1 2 3 30 30 H 0.96995 * 119.99936 * 0.02562 * 9 7 2 31 31 H 1.08993 * 109.47349 * 60.00210 * 10 9 7 32 32 H 1.09005 * 109.47039 * 300.00035 * 10 9 7 33 33 H 1.08998 * 109.47682 * 59.99499 * 11 10 9 34 34 H 1.09005 * 109.46797 * 299.99692 * 11 10 9 35 35 H 1.09004 * 109.46865 * 29.99581 * 13 12 11 36 36 H 1.08998 * 109.47138 * 150.00131 * 13 12 11 37 37 H 1.09007 * 109.46973 * 300.00153 * 14 13 12 38 38 H 1.08998 * 109.47148 * 59.99875 * 14 13 12 39 39 H 1.08005 * 120.00076 * 359.97438 * 16 15 14 40 40 H 1.08001 * 120.00271 * 180.23035 * 17 16 15 41 41 H 1.08004 * 119.99858 * 179.72995 * 18 17 16 42 42 H 1.08008 * 119.99616 * 179.97438 * 19 18 17 43 43 H 1.08001 * 120.00066 * 0.02562 * 20 15 14 44 44 H 1.09004 * 109.47103 * 59.99751 * 23 21 12 45 45 H 1.09000 * 109.47247 * 299.99628 * 23 21 12 46 46 H 1.07999 * 126.65761 * 359.97088 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4475 2.6527 0.7000 6 1 3.5477 1.4404 0.7002 7 6 2.0103 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0005 9 7 3.3797 -1.2020 0.0011 10 6 4.1122 -2.4708 0.0011 11 6 5.6164 -2.1911 0.0024 12 7 6.3489 -3.4598 0.0030 13 6 6.7142 -4.0942 1.2720 14 6 8.0906 -3.5937 1.7148 15 6 8.4661 -4.2457 3.0206 16 6 8.1243 -3.6438 4.2171 17 6 8.4645 -4.2443 5.4148 18 6 9.1555 -5.4415 5.4159 19 6 9.5018 -6.0408 4.2194 20 6 9.1571 -5.4429 3.0217 21 6 6.6869 -4.0435 -1.1639 22 8 6.3842 -3.5185 -2.2145 23 6 7.4410 -5.3482 -1.1633 24 7 7.6857 -5.7715 -2.5443 25 6 8.8802 -6.0656 -3.0906 26 7 8.6520 -6.3967 -4.3381 27 7 7.3837 -6.3099 -4.5473 28 7 6.7962 -5.9375 -3.4640 29 1 -0.4850 0.8400 -0.0004 30 1 3.8646 -0.3620 0.0014 31 1 3.8493 -3.0421 -0.8891 32 1 3.8485 -3.0426 0.8909 33 1 5.8791 -1.6199 0.8927 34 1 5.8803 -1.6192 -0.8873 35 1 5.9741 -3.8409 2.0311 36 1 6.7456 -5.1759 1.1417 37 1 8.8307 -3.8469 0.9557 38 1 8.0592 -2.5120 1.8451 39 1 7.5885 -2.7060 4.2162 40 1 8.1942 -3.7759 6.3496 41 1 9.4252 -5.9085 6.3517 42 1 10.0421 -6.9760 4.2203 43 1 9.4283 -5.9108 2.0868 44 1 6.8518 -6.1081 -0.6497 45 1 8.3930 -5.2174 -0.6489 46 1 9.8402 -6.0346 -2.5968 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001162689149.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:41 Heat of formation + Delta-G solvation = 109.327141 kcal Electronic energy + Delta-G solvation = -29243.767446 eV Core-core repulsion = 25171.151244 eV Total energy + Delta-G solvation = -4072.616202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -45.15330 -41.33367 -40.00270 -37.82410 -36.65890 -36.41279 -34.20826 -33.48312 -33.36119 -31.64695 -31.20266 -29.73031 -28.69046 -25.71717 -24.98911 -24.80857 -24.16087 -23.34790 -23.16620 -21.84719 -20.65728 -19.66320 -18.90942 -18.65468 -17.65629 -17.57690 -17.18909 -16.93720 -16.55420 -16.24976 -16.01910 -15.86136 -15.75807 -15.39332 -14.89694 -14.72419 -14.55427 -14.32234 -14.11402 -14.02040 -13.72396 -13.63586 -13.36295 -13.19567 -13.07773 -13.00231 -12.75603 -12.42007 -12.20419 -12.17008 -12.13004 -12.08321 -11.86142 -11.81435 -11.63180 -11.46119 -11.05419 -10.96457 -10.03149 -9.69304 -9.41835 -9.39195 -8.07680 -5.43712 0.28651 0.53487 0.62914 0.96813 1.28009 1.33463 1.34191 1.40650 1.46762 1.80108 2.44787 2.95106 3.04573 3.23667 3.41763 3.51489 3.66314 3.83554 3.95606 3.99947 4.02427 4.08686 4.11289 4.21564 4.27668 4.35315 4.39279 4.42511 4.51147 4.59639 4.69154 4.73322 4.76120 4.89931 4.97564 5.03640 5.10790 5.22934 5.29037 5.33033 5.39242 5.68668 5.69628 5.76795 5.81481 6.14998 6.19046 6.25282 6.92395 7.01641 7.60079 7.74380 7.94839 9.13751 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.005974 B = 0.003624 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4686.046672 B = 7724.675284 C =11855.004702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.063 4.063 3 Si 0.959 3.041 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.241 1.241 7 C -0.242 4.242 8 H 0.051 0.949 9 N -0.755 5.755 10 C 0.148 3.852 11 C 0.120 3.880 12 N -0.591 5.591 13 C 0.101 3.899 14 C -0.092 4.092 15 C -0.086 4.086 16 C -0.132 4.132 17 C -0.136 4.136 18 C -0.137 4.137 19 C -0.129 4.129 20 C -0.116 4.116 21 C 0.493 3.507 22 O -0.567 6.567 23 C 0.096 3.904 24 N -0.299 5.299 25 C 0.186 3.814 26 N -0.347 5.347 27 N -0.121 5.121 28 N -0.101 5.101 29 H 0.260 0.740 30 H 0.369 0.631 31 H 0.000 1.000 32 H 0.036 0.964 33 H 0.108 0.892 34 H 0.067 0.933 35 H 0.085 0.915 36 H 0.116 0.884 37 H 0.102 0.898 38 H 0.073 0.927 39 H 0.120 0.880 40 H 0.123 0.877 41 H 0.129 0.871 42 H 0.139 0.861 43 H 0.157 0.843 44 H 0.167 0.833 45 H 0.207 0.793 46 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.117 -14.778 13.116 36.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.254 4.254 3 Si 0.785 3.215 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.165 1.165 7 C -0.373 4.373 8 H 0.069 0.931 9 N -0.401 5.401 10 C 0.020 3.980 11 C -0.004 4.004 12 N -0.323 5.323 13 C -0.020 4.020 14 C -0.130 4.130 15 C -0.086 4.086 16 C -0.151 4.151 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.146 4.146 20 C -0.134 4.134 21 C 0.280 3.720 22 O -0.444 6.444 23 C -0.027 4.027 24 N -0.102 5.102 25 C -0.111 4.111 26 N -0.195 5.195 27 N -0.115 5.115 28 N -0.089 5.089 29 H 0.069 0.931 30 H 0.202 0.798 31 H 0.018 0.982 32 H 0.054 0.946 33 H 0.126 0.874 34 H 0.085 0.915 35 H 0.103 0.897 36 H 0.134 0.866 37 H 0.121 0.879 38 H 0.091 0.909 39 H 0.138 0.862 40 H 0.141 0.859 41 H 0.147 0.853 42 H 0.157 0.843 43 H 0.175 0.825 44 H 0.184 0.816 45 H 0.224 0.776 46 H 0.316 0.684 Dipole moment (debyes) X Y Z Total from point charges 29.933 -14.844 11.437 35.315 hybrid contribution -0.275 1.560 0.824 1.785 sum 29.658 -13.285 12.261 34.734 Atomic orbital electron populations 1.69890 1.07300 1.26966 1.59130 1.25589 0.96212 1.01590 1.02044 0.85360 0.79062 0.79037 0.78026 1.21007 1.21711 1.16500 1.18967 0.82585 0.93464 1.42280 0.93113 1.42488 1.02563 1.03952 1.91121 1.20977 0.91554 0.87694 0.97731 1.21425 0.89530 0.85638 1.03781 1.47802 1.54860 1.23177 1.06415 1.22078 0.96971 0.99210 0.83731 1.21000 0.96540 1.00993 0.94499 1.19793 0.98834 0.95815 0.94200 1.21313 1.00394 1.00527 0.92820 1.21370 0.99118 0.96442 0.98504 1.21442 0.98873 0.95893 0.99319 1.21485 0.99960 1.00646 0.92550 1.21416 0.97857 0.94641 0.99440 1.20999 0.80219 0.87103 0.83652 1.90889 1.55400 1.65361 1.32799 1.22664 1.08255 0.95511 0.76293 1.48445 1.05787 1.43419 1.12509 1.28861 0.94495 0.97459 0.90327 1.74864 1.08392 1.20764 1.15434 1.78671 1.00219 1.15912 1.16694 1.79017 1.19706 1.15593 0.94553 0.93131 0.79800 0.98199 0.94646 0.87414 0.91464 0.89668 0.86571 0.87927 0.90872 0.86180 0.85877 0.85342 0.84270 0.82543 0.81595 0.77607 0.68412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.20 13.97 21.65 0.30 -63.90 16 2 C -0.06 -3.77 5.50 84.86 0.47 -3.30 16 3 Si 0.96 45.54 27.74 68.60 1.90 47.44 16 4 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 6 H -0.24 -9.88 6.52 99.48 0.65 -9.23 16 7 C -0.24 -14.26 10.47 84.03 0.88 -13.38 16 8 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 9 N -0.75 -35.76 5.41 -343.46 -1.86 -37.61 16 10 C 0.15 5.60 6.58 86.38 0.57 6.17 16 11 C 0.12 3.14 5.52 86.38 0.48 3.62 16 12 N -0.59 -10.10 2.47 -821.81 -2.03 -12.13 16 13 C 0.10 0.79 5.19 86.38 0.45 1.24 16 14 C -0.09 -0.43 5.67 29.85 0.17 -0.27 16 15 C -0.09 -0.61 5.13 -19.87 -0.10 -0.71 16 16 C -0.13 -1.49 9.70 22.27 0.22 -1.27 16 17 C -0.14 -1.57 10.05 22.27 0.22 -1.35 16 18 C -0.14 -1.32 10.05 22.27 0.22 -1.09 16 19 C -0.13 -0.86 10.05 22.27 0.22 -0.64 16 20 C -0.12 -0.50 9.70 22.27 0.22 -0.29 16 21 C 0.49 9.80 7.69 87.66 0.67 10.47 16 22 O -0.57 -19.33 15.29 -3.04 -0.05 -19.38 16 23 C 0.10 0.67 5.52 85.63 0.47 1.14 16 24 N -0.30 -5.00 3.19 -355.54 -1.13 -6.13 16 25 C 0.19 2.26 12.79 180.27 2.31 4.57 16 26 N -0.35 -8.47 12.36 -60.29 -0.74 -9.21 16 27 N -0.12 -3.86 13.43 37.01 0.50 -3.36 16 28 N -0.10 -3.00 12.30 37.02 0.46 -2.54 16 29 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 30 H 0.37 16.21 5.53 -92.71 -0.51 15.70 16 31 H 0.00 -0.01 8.14 -2.39 -0.02 -0.02 16 32 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.11 2.26 8.07 -2.39 -0.02 2.25 16 34 H 0.07 2.07 7.42 -2.38 -0.02 2.05 16 35 H 0.08 0.93 8.07 -2.38 -0.02 0.91 16 36 H 0.12 0.13 6.44 -2.39 -0.02 0.11 16 37 H 0.10 -0.09 7.16 -2.38 -0.02 -0.11 16 38 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 39 H 0.12 1.33 8.06 -2.91 -0.02 1.31 16 40 H 0.12 1.22 8.06 -2.91 -0.02 1.20 16 41 H 0.13 0.88 8.06 -2.91 -0.02 0.85 16 42 H 0.14 0.37 8.06 -2.91 -0.02 0.35 16 43 H 0.16 -0.51 8.06 -2.91 -0.02 -0.54 16 44 H 0.17 0.25 7.40 -2.38 -0.02 0.23 16 45 H 0.21 -1.40 7.12 -2.39 -0.02 -1.42 16 46 H 0.30 -1.18 8.06 -2.91 -0.02 -1.20 16 Total: -1.00 -100.18 392.81 5.24 -94.94 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: 0.43 Total: 6.98 kcal Atomic # 6 Polarization: -2.55 SS G_CDS: 7.46 Total: 4.91 kcal Atomic # 7 Polarization: -130.38 SS G_CDS: -4.51 Total: -134.90 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: -0.05 Total: -19.38 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.44 kcal Total: -100.18 5.24 -94.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162689149.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.266 kcal (2) G-P(sol) polarization free energy of solvation -100.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.327 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds