Wall clock time and date at job start Wed Apr 1 2020 04:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86797 * 119.99970 * 2 1 4 4 H 1.48503 * 109.47041 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46971 * 299.99496 * 3 2 1 6 6 H 1.48499 * 109.47445 * 59.99855 * 3 2 1 7 7 C 1.38817 * 119.99878 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99639 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99950 * 0.02562 * 7 2 1 10 10 C 1.46499 * 119.99478 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.46936 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47325 * 179.97438 * 11 10 9 13 13 C 1.46493 * 120.00444 * 270.27624 * 12 11 10 14 14 C 1.53000 * 109.47637 * 269.72749 * 13 12 11 15 15 C 1.50697 * 109.47306 * 180.02562 * 14 13 12 16 16 C 1.38239 * 119.99571 * 269.72408 * 15 14 13 17 17 C 1.38236 * 119.99961 * 179.77231 * 16 15 14 18 18 C 1.38241 * 119.99773 * 0.49774 * 17 16 15 19 19 C 1.38235 * 119.99793 * 359.75592 * 18 17 16 20 20 C 1.38227 * 120.00443 * 89.99894 * 15 14 13 21 21 C 1.34784 * 119.99635 * 90.00335 * 12 11 10 22 22 O 1.21283 * 119.99649 * 180.02562 * 21 12 11 23 23 C 1.50694 * 119.99988 * 0.02562 * 21 12 11 24 24 N 1.46497 * 109.47115 * 180.02562 * 23 21 12 25 25 N 1.28885 * 125.45138 * 90.00078 * 24 23 21 26 26 C 1.31044 * 107.91595 * 180.02562 * 25 24 23 27 27 N 1.33311 * 106.90439 * 359.97438 * 26 25 24 28 28 N 1.28781 * 125.44934 * 269.69590 * 24 23 21 29 29 H 0.96996 * 119.99938 * 0.02562 * 1 2 3 30 30 H 0.96994 * 120.00217 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.47587 * 60.00249 * 10 9 7 32 32 H 1.08993 * 109.47307 * 299.99491 * 10 9 7 33 33 H 1.09003 * 109.46903 * 59.99791 * 11 10 9 34 34 H 1.09004 * 109.47175 * 300.00462 * 11 10 9 35 35 H 1.09002 * 109.47192 * 29.72648 * 13 12 11 36 36 H 1.08996 * 109.47342 * 149.72358 * 13 12 11 37 37 H 1.09002 * 109.46747 * 300.00171 * 14 13 12 38 38 H 1.08996 * 109.47074 * 59.99445 * 14 13 12 39 39 H 1.07999 * 120.00046 * 359.97438 * 16 15 14 40 40 H 1.07992 * 120.00459 * 180.23219 * 17 16 15 41 41 H 1.07996 * 120.00037 * 179.72393 * 18 17 16 42 42 H 1.08004 * 119.99948 * 179.97438 * 19 18 17 43 43 H 1.08001 * 120.00123 * 0.02562 * 20 15 14 44 44 H 1.08998 * 109.47224 * 299.99701 * 23 21 12 45 45 H 1.09002 * 109.47054 * 60.00213 * 23 21 12 46 46 H 1.08004 * 126.54434 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8915 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0581 -3.6568 0.0005 11 6 1.0639 -4.8197 0.0012 12 7 1.7963 -6.0884 0.0006 13 6 2.1670 -6.7197 -1.2683 14 6 1.0498 -7.6659 -1.7129 15 6 1.4315 -8.3157 -3.0179 16 6 1.0806 -7.7202 -4.2151 17 6 1.4347 -8.3138 -5.4122 18 6 2.1308 -9.5082 -5.4122 19 6 2.4771 -10.1063 -4.2150 20 6 2.1274 -9.5100 -3.0179 21 6 2.1340 -6.6721 1.1676 22 8 2.7409 -7.7222 1.1671 23 6 1.7577 -6.0199 2.4729 24 7 2.2350 -6.8440 3.5861 25 7 3.3874 -6.7389 4.1535 26 6 3.4530 -7.6399 5.1028 27 7 2.2942 -8.2989 5.0925 28 7 1.5681 -7.7858 4.1578 29 1 -0.4850 0.8400 -0.0004 30 1 0.3556 -2.3881 0.0005 31 1 2.6847 -3.7146 0.8905 32 1 2.6847 -3.7145 -0.8894 33 1 0.4369 -4.7622 -0.8886 34 1 0.4375 -4.7618 0.8914 35 1 2.3154 -5.9511 -2.0269 36 1 3.0903 -7.2839 -1.1374 37 1 0.9015 -8.4345 -0.9544 38 1 0.1265 -7.1017 -1.8438 39 1 0.5326 -6.7896 -4.2151 40 1 1.1639 -7.8468 -6.3475 41 1 2.4036 -9.9743 -6.3474 42 1 3.0206 -11.0396 -4.2149 43 1 2.3974 -9.9777 -2.0826 44 1 2.2147 -5.0321 2.5306 45 1 0.6735 -5.9227 2.5312 46 1 4.2867 -7.8150 5.7668 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001162810633.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:08:46 Heat of formation + Delta-G solvation = 139.239590 kcal Electronic energy + Delta-G solvation = -29134.067769 eV Core-core repulsion = 25062.748668 eV Total energy + Delta-G solvation = -4071.319101 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -44.36312 -40.40120 -39.35739 -36.69857 -35.20150 -34.65435 -33.44160 -33.07634 -31.39030 -31.06035 -30.06186 -28.59299 -27.49866 -24.48864 -24.03313 -23.98662 -22.86311 -22.74475 -21.87422 -21.18228 -19.65879 -18.19733 -17.93997 -17.06955 -17.02495 -16.58828 -16.32514 -15.62033 -15.51013 -15.36673 -15.07663 -14.70997 -14.11571 -13.97470 -13.93999 -13.70916 -13.62054 -13.41940 -13.32591 -13.17540 -12.87182 -12.70967 -12.28280 -12.02275 -11.64920 -11.44055 -11.39857 -11.24534 -11.19041 -11.04584 -11.01126 -10.94149 -10.90408 -10.69751 -10.19631 -9.98738 -9.91739 -9.15115 -9.09735 -9.05892 -8.69122 -7.14265 -5.93064 -3.24062 1.11062 1.16695 1.22529 1.67122 2.19653 2.21970 2.73964 3.34305 3.41193 3.42612 3.60302 3.93337 3.99929 4.30621 4.48141 4.61989 4.63294 4.66633 4.81594 4.82995 4.91818 4.95559 5.00880 5.04542 5.30736 5.33623 5.37900 5.41740 5.42999 5.57916 5.61006 5.63848 5.69796 5.74917 5.86343 5.90178 5.96146 5.98692 6.15672 6.29337 6.33513 6.42696 6.46525 6.49469 6.82665 7.04786 7.56705 7.75025 8.24451 8.31207 9.36791 9.88089 10.22695 11.29199 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.005486 B = 0.003626 C = 0.002280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 5102.783108 B = 7719.262910 C =12278.189256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.009 4.009 3 Si 0.908 3.092 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.290 1.290 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.730 5.730 10 C 0.136 3.864 11 C 0.090 3.910 12 N -0.595 5.595 13 C 0.124 3.876 14 C -0.096 4.096 15 C -0.078 4.078 16 C -0.114 4.114 17 C -0.119 4.119 18 C -0.126 4.126 19 C -0.120 4.120 20 C -0.113 4.113 21 C 0.511 3.489 22 O -0.526 6.526 23 C 0.106 3.894 24 N -0.122 5.122 25 N -0.298 5.298 26 C 0.141 3.859 27 N -0.288 5.288 28 N -0.052 5.052 29 H 0.257 0.743 30 H 0.385 0.615 31 H 0.021 0.979 32 H 0.027 0.973 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.119 0.881 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.153 0.847 45 H 0.149 0.851 46 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.314 -17.919 -3.267 18.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.205 4.205 3 Si 0.738 3.262 4 H -0.205 1.205 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.375 5.375 10 C 0.008 3.992 11 C -0.033 4.033 12 N -0.328 5.328 13 C 0.001 3.999 14 C -0.135 4.135 15 C -0.079 4.079 16 C -0.132 4.132 17 C -0.137 4.137 18 C -0.144 4.144 19 C -0.138 4.138 20 C -0.131 4.131 21 C 0.296 3.704 22 O -0.402 6.402 23 C -0.018 4.018 24 N -0.034 5.034 25 N -0.147 5.147 26 C -0.162 4.162 27 N -0.160 5.160 28 N -0.046 5.046 29 H 0.066 0.934 30 H 0.219 0.781 31 H 0.038 0.962 32 H 0.045 0.955 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.137 0.863 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.171 0.829 45 H 0.166 0.834 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 2.178 -18.407 -3.546 18.872 hybrid contribution 0.688 1.171 0.103 1.362 sum 2.866 -17.237 -3.443 17.809 Atomic orbital electron populations 1.69651 1.05128 1.25875 1.57185 1.24751 0.95549 0.97808 1.02407 0.86115 0.78876 0.83861 0.77306 1.20452 1.21713 1.21710 1.19215 0.91099 0.83769 1.43543 0.91007 1.42204 1.05835 0.99628 1.89859 1.21014 0.93706 0.85626 0.98892 1.22096 0.94975 0.81923 1.04321 1.47823 1.56537 1.23242 1.05183 1.21517 0.97935 0.96376 0.84040 1.20968 0.99181 0.99071 0.94239 1.19760 0.98312 0.95215 0.94618 1.21136 1.00152 0.99983 0.91929 1.21164 0.98661 0.95849 0.98068 1.21156 0.99145 0.96076 0.97994 1.21148 1.00148 1.00005 0.92547 1.21122 0.98307 0.95429 0.98290 1.20154 0.79895 0.85253 0.85115 1.90782 1.40137 1.22331 1.86954 1.22219 1.04175 0.94609 0.80763 1.49529 1.07634 1.22843 1.23357 1.74752 1.04710 1.24726 1.10516 1.27329 0.98779 0.91919 0.98162 1.75854 1.03566 1.22694 1.13852 1.78973 1.21274 1.00144 1.04238 0.93355 0.78119 0.96162 0.95496 0.88959 0.89923 0.89390 0.89586 0.90516 0.90346 0.85764 0.86046 0.86279 0.86197 0.86017 0.82927 0.83380 0.74879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -26.18 13.06 55.49 0.72 -25.46 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.24 29.55 -169.99 -5.02 16.21 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.25 -6.31 9.99 -15.06 -0.15 -6.46 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.41 16 9 N -0.73 -16.06 5.60 -59.91 -0.34 -16.40 16 10 C 0.14 2.25 6.58 -4.04 -0.03 2.22 16 11 C 0.09 1.06 5.32 -4.04 -0.02 1.04 16 12 N -0.60 -6.88 2.47 -173.69 -0.43 -7.31 16 13 C 0.12 1.36 5.39 -4.05 -0.02 1.34 16 14 C -0.10 -0.97 5.67 -27.88 -0.16 -1.12 16 15 C -0.08 -0.81 5.13 -104.63 -0.54 -1.34 16 16 C -0.11 -1.11 9.70 -39.58 -0.38 -1.50 16 17 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 18 C -0.13 -1.11 10.05 -39.58 -0.40 -1.51 16 19 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 20 C -0.11 -1.16 9.70 -39.59 -0.38 -1.55 16 21 C 0.51 6.66 7.74 -10.98 -0.09 6.58 16 22 O -0.53 -8.64 16.01 5.56 0.09 -8.56 16 23 C 0.11 1.21 5.64 -5.20 -0.03 1.18 16 24 N -0.12 -1.69 3.49 -11.72 -0.04 -1.73 16 25 N -0.30 -4.16 12.13 29.34 0.36 -3.80 16 26 C 0.14 1.70 13.26 -91.58 -1.21 0.48 16 27 N -0.29 -4.12 12.50 29.33 0.37 -3.76 16 28 N -0.05 -0.78 13.25 60.35 0.80 0.02 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.38 8.77 7.67 -40.82 -0.31 8.46 16 31 H 0.02 0.34 7.22 -51.93 -0.37 -0.03 16 32 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 1.04 8.07 -51.93 -0.42 0.63 16 34 H 0.08 0.85 6.44 -51.93 -0.33 0.51 16 35 H 0.09 0.93 8.07 -51.93 -0.42 0.51 16 36 H 0.09 1.06 7.42 -51.93 -0.39 0.68 16 37 H 0.08 0.85 8.09 -51.93 -0.42 0.43 16 38 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 40 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.12 0.88 8.06 -52.48 -0.42 0.46 16 43 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 44 H 0.15 1.61 7.19 -51.93 -0.37 1.24 16 45 H 0.15 1.24 7.40 -51.93 -0.38 0.86 16 46 H 0.24 1.62 8.06 -52.48 -0.42 1.20 16 LS Contribution 397.44 15.07 5.99 5.99 Total: -1.00 -33.79 397.44 -8.15 -41.95 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.35 Total: 6.81 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: -4.30 Total: -3.97 kcal Atomic # 7 Polarization: -59.87 SS G_CDS: 1.44 Total: -58.43 kcal Atomic # 8 Polarization: -8.64 SS G_CDS: 0.09 Total: -8.56 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.79 -8.15 -41.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001162810633.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.187 kcal (2) G-P(sol) polarization free energy of solvation -33.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 147.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds