Wall clock time and date at job start Wed Apr 1 2020 04:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86794 * 120.00021 * 2 1 4 4 H 1.48501 * 109.46908 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47031 * 299.99591 * 3 2 1 6 6 H 1.48502 * 109.47021 * 59.99935 * 3 2 1 7 7 C 1.38815 * 119.99461 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99398 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00374 * 0.02562 * 7 2 1 10 10 C 1.46498 * 120.00133 * 179.97438 * 9 7 2 11 11 C 1.52994 * 109.47311 * 175.58918 * 10 9 7 12 12 C 1.52993 * 115.55361 * 303.90426 * 11 10 9 13 13 C 1.52999 * 109.47306 * 278.02797 * 12 11 10 14 14 N 1.46498 * 109.47509 * 175.02387 * 13 12 11 15 15 C 1.34784 * 119.99915 * 179.72898 * 14 13 12 16 16 O 1.21280 * 120.00030 * 0.27236 * 15 14 13 17 17 C 1.50700 * 119.99722 * 180.27613 * 15 14 13 18 18 C 1.50694 * 109.46736 * 180.02562 * 17 15 14 19 19 N 1.32613 * 125.19048 * 90.02399 * 18 17 15 20 20 C 1.32828 * 109.75740 * 179.97438 * 19 18 17 21 21 N 1.33821 * 132.49695 * 180.02562 * 20 19 18 22 22 C 1.31358 * 120.86051 * 179.97438 * 21 20 19 23 23 C 1.40041 * 120.31035 * 359.97438 * 22 21 20 24 24 C 1.35777 * 119.24475 * 0.02562 * 23 22 21 25 25 N 1.35981 * 119.02076 * 359.97438 * 24 23 22 26 26 N 1.31185 * 125.18249 * 269.71285 * 18 17 15 27 27 C 1.53007 * 117.51672 * 89.60190 * 11 10 9 28 28 C 1.53001 * 60.00079 * 107.48042 * 27 11 10 29 29 H 0.97009 * 120.00052 * 0.02562 * 1 2 3 30 30 H 0.97001 * 120.00206 * 359.97438 * 9 7 2 31 31 H 1.09004 * 109.47082 * 55.59316 * 10 9 7 32 32 H 1.08994 * 109.47230 * 295.59536 * 10 9 7 33 33 H 1.09006 * 109.47424 * 158.03503 * 12 11 10 34 34 H 1.08996 * 109.47426 * 38.03080 * 12 11 10 35 35 H 1.09007 * 109.46803 * 55.02077 * 13 12 11 36 36 H 1.09004 * 109.47419 * 295.02529 * 13 12 11 37 37 H 0.96993 * 120.00092 * 0.02562 * 14 13 12 38 38 H 1.09004 * 109.46992 * 299.99483 * 17 15 14 39 39 H 1.09003 * 109.47312 * 59.99599 * 17 15 14 40 40 H 1.07996 * 119.83854 * 179.97438 * 22 21 20 41 41 H 1.08004 * 120.37703 * 180.02562 * 23 22 21 42 42 H 1.07997 * 120.49487 * 180.02562 * 24 23 22 43 43 H 1.08991 * 117.49896 * 214.97327 * 27 11 10 44 44 H 1.09005 * 117.49414 * 359.97438 * 27 11 10 45 45 H 1.08996 * 117.49992 * 252.50878 * 28 27 11 46 46 H 1.09004 * 117.49813 * 107.49126 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8915 2.3963 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0005 11 6 1.0674 -4.8176 0.1115 12 6 0.1319 -4.7735 1.3213 13 6 0.8588 -5.3269 2.5485 14 7 0.0066 -5.1755 3.7305 15 6 0.4407 -5.6013 4.9333 16 8 1.5388 -6.1054 5.0381 17 6 -0.4385 -5.4512 6.1480 18 6 0.2757 -6.0006 7.3559 19 7 1.0671 -5.3026 8.1590 20 6 1.5334 -6.0878 9.1235 21 7 2.3517 -5.8608 10.1577 22 6 2.6686 -6.8257 10.9907 23 6 2.1516 -8.1145 10.8089 24 6 1.3205 -8.3543 9.7623 25 7 1.0119 -7.3341 8.9179 26 7 0.2046 -7.2412 7.7766 27 6 0.5122 -5.3999 -1.1900 28 6 1.5334 -6.1926 -0.3715 29 1 -0.4851 0.8401 -0.0004 30 1 0.3555 -2.3881 0.0005 31 1 2.7425 -3.6812 0.8484 32 1 2.6240 -3.7495 -0.9262 33 1 -0.7521 -5.3784 1.1193 34 1 -0.1685 -3.7430 1.5109 35 1 1.7886 -4.7781 2.6982 36 1 1.0811 -6.3828 2.3938 37 1 -0.8718 -4.7727 3.6467 38 1 -0.6615 -4.3961 6.3070 39 1 -1.3678 -5.9998 5.9941 40 1 3.3308 -6.6242 11.8196 41 1 2.4111 -8.9086 11.4934 42 1 0.9100 -9.3404 9.6033 43 1 -0.5194 -5.7515 -1.1842 44 1 0.8524 -4.9557 -2.1255 45 1 2.5455 -6.2701 -0.7686 46 1 1.1735 -7.0658 0.1727 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168137481.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:19 Heat of formation + Delta-G solvation = 138.865023 kcal Electronic energy + Delta-G solvation = -28430.234935 eV Core-core repulsion = 24358.899592 eV Total energy + Delta-G solvation = -4071.335344 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.23799 -39.88870 -39.01940 -38.20397 -34.97774 -34.77495 -33.91158 -32.80466 -31.06896 -30.79566 -30.52738 -28.99822 -25.94895 -25.13885 -24.28060 -23.42692 -22.70856 -22.01356 -21.50582 -20.44839 -18.80165 -18.59705 -18.40692 -17.36101 -17.04731 -16.74761 -16.53255 -15.92867 -15.68746 -15.12762 -14.99957 -14.43048 -14.40064 -13.85440 -13.83157 -13.75258 -13.45068 -13.08317 -13.01968 -12.97446 -12.70685 -12.39427 -12.33127 -12.22762 -11.84747 -11.40019 -11.11378 -10.90914 -10.82127 -10.57814 -10.47291 -10.38236 -10.17399 -10.08648 -9.89376 -9.79031 -9.60961 -9.30735 -9.16854 -8.98377 -8.81369 -6.87099 -5.73575 -3.01035 0.00055 0.31988 1.50471 2.11382 2.60961 2.82883 3.03367 3.27609 3.46579 3.52716 3.54478 3.54731 3.82372 4.07330 4.09750 4.36054 4.56001 4.64248 4.70949 4.83687 5.00316 5.05139 5.08794 5.11686 5.17935 5.35449 5.38222 5.56210 5.62803 5.71648 5.74407 5.78851 5.85594 5.88553 5.92492 6.18471 6.21668 6.23160 6.44464 6.47320 6.48171 6.63179 6.79834 6.86296 7.03513 7.48948 7.60703 7.74720 8.19979 8.45799 9.57573 10.15384 10.51157 11.49418 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.012022 B = 0.002084 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.546867 B =13435.136326 C =14966.011488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.905 3.095 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.236 4.236 8 H 0.070 0.930 9 N -0.727 5.727 10 C 0.187 3.813 11 C -0.118 4.118 12 C -0.092 4.092 13 C 0.127 3.873 14 N -0.722 5.722 15 C 0.522 3.478 16 O -0.534 6.534 17 C -0.055 4.055 18 C 0.303 3.697 19 N -0.508 5.508 20 C 0.442 3.558 21 N -0.452 5.452 22 C 0.204 3.796 23 C -0.226 4.226 24 C 0.173 3.827 25 N -0.326 5.326 26 N -0.323 5.323 27 C -0.166 4.166 28 C -0.178 4.178 29 H 0.254 0.746 30 H 0.384 0.616 31 H 0.026 0.974 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.403 0.597 38 H 0.132 0.868 39 H 0.125 0.875 40 H 0.191 0.809 41 H 0.175 0.825 42 H 0.182 0.818 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.092 0.908 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 -21.748 20.544 29.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.367 4.367 8 H 0.088 0.912 9 N -0.372 5.372 10 C 0.060 3.940 11 C -0.119 4.119 12 C -0.130 4.130 13 C 0.004 3.996 14 N -0.374 5.374 15 C 0.306 3.694 16 O -0.410 6.410 17 C -0.098 4.098 18 C 0.021 3.979 19 N -0.240 5.240 20 C 0.082 3.918 21 N -0.166 5.166 22 C 0.018 3.982 23 C -0.252 4.252 24 C 0.035 3.965 25 N -0.105 5.105 26 N -0.154 5.154 27 C -0.203 4.203 28 C -0.216 4.216 29 H 0.063 0.937 30 H 0.219 0.781 31 H 0.044 0.956 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.109 0.891 35 H 0.092 0.908 36 H 0.082 0.918 37 H 0.238 0.762 38 H 0.150 0.850 39 H 0.143 0.857 40 H 0.208 0.792 41 H 0.192 0.808 42 H 0.199 0.801 43 H 0.107 0.893 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.366 -21.152 20.002 29.144 hybrid contribution -0.378 0.219 0.059 0.441 sum -1.744 -20.933 20.061 29.046 Atomic orbital electron populations 1.69668 1.05035 1.25421 1.58143 1.24711 0.95538 0.97600 1.03192 0.86130 0.78848 0.84204 0.77136 1.20595 1.21948 1.21870 1.19281 0.91073 0.84157 1.42178 0.91220 1.42305 1.05874 0.99664 1.89316 1.20179 0.91903 0.84204 0.97752 1.21568 1.00887 0.94863 0.94594 1.21269 0.96698 1.03063 0.91955 1.21367 0.94298 1.00879 0.83061 1.45912 1.21130 1.62696 1.07631 1.19958 0.87117 0.78443 0.83919 1.90749 1.21189 1.43576 1.85471 1.20072 0.98129 1.04881 0.86675 1.23500 0.92454 0.87049 0.94893 1.70714 1.17608 1.30284 1.05348 1.22735 0.93931 0.80707 0.94439 1.68027 1.12678 1.33857 1.02015 1.23603 0.92591 0.87420 0.94625 1.21957 1.02121 1.00702 1.00373 1.22168 0.93832 0.93351 0.87121 1.48780 1.31355 1.10809 1.19586 1.78514 1.18215 1.19569 0.99137 1.22995 0.98213 1.03469 0.95634 1.22964 0.99663 0.94501 1.04445 0.93659 0.78143 0.95620 0.96466 0.91941 0.89067 0.90840 0.91842 0.76246 0.85002 0.85707 0.79243 0.80797 0.80056 0.89307 0.88701 0.88970 0.89245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.81 29.55 -169.99 -5.02 17.79 16 4 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 7 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 8 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 9 N -0.73 -18.33 5.23 -59.91 -0.31 -18.64 16 10 C 0.19 3.85 6.15 -4.05 -0.02 3.82 16 11 C -0.12 -1.91 1.65 -154.51 -0.25 -2.16 16 12 C -0.09 -1.35 5.20 -26.73 -0.14 -1.49 16 13 C 0.13 1.86 5.49 -4.04 -0.02 1.84 16 14 N -0.72 -9.17 5.56 -60.29 -0.33 -9.51 16 15 C 0.52 7.52 7.82 -10.98 -0.09 7.43 16 16 O -0.53 -10.18 16.03 5.56 0.09 -10.09 16 17 C -0.06 -0.61 6.33 -29.04 -0.18 -0.79 16 18 C 0.30 4.39 6.59 -157.01 -1.03 3.35 16 19 N -0.51 -8.34 11.25 -11.80 -0.13 -8.47 16 20 C 0.44 6.27 8.99 -323.14 -2.91 3.37 16 21 N -0.45 -5.19 10.48 -13.82 -0.14 -5.34 16 22 C 0.20 1.12 11.27 -17.08 -0.19 0.92 16 23 C -0.23 -0.76 10.06 -39.79 -0.40 -1.16 16 24 C 0.17 1.08 11.32 -16.59 -0.19 0.90 16 25 N -0.33 -3.89 3.91 -13.84 -0.05 -3.94 16 26 N -0.32 -4.48 12.78 32.39 0.41 -4.06 16 27 C -0.17 -2.42 9.87 -26.73 -0.26 -2.68 16 28 C -0.18 -2.41 9.58 -26.73 -0.26 -2.67 16 29 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 30 H 0.38 10.04 6.80 -40.82 -0.28 9.76 16 31 H 0.03 0.55 7.96 -51.93 -0.41 0.14 16 32 H 0.02 0.37 8.10 -51.93 -0.42 -0.05 16 33 H 0.06 0.78 7.93 -51.93 -0.41 0.37 16 34 H 0.09 1.57 6.94 -51.93 -0.36 1.21 16 35 H 0.07 1.29 7.96 -51.92 -0.41 0.87 16 36 H 0.06 0.91 7.72 -51.93 -0.40 0.51 16 37 H 0.40 3.91 8.47 -40.82 -0.35 3.57 16 38 H 0.13 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.19 0.17 8.06 -52.49 -0.42 -0.25 16 41 H 0.17 -0.21 8.06 -52.48 -0.42 -0.63 16 42 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 43 H 0.09 1.16 8.07 -51.93 -0.42 0.74 16 44 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 45 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.09 1.08 7.90 -51.93 -0.41 0.67 16 LS Contribution 395.70 15.07 5.96 5.96 Total: -1.00 -40.74 395.70 -11.39 -52.13 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -6.38 Total: 8.23 kcal Atomic # 6 Polarization: 9.53 SS G_CDS: -6.20 Total: 3.34 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: 0.16 Total: -77.35 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: 0.09 Total: -10.09 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.79 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -40.74 -11.39 -52.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168137481.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.991 kcal (2) G-P(sol) polarization free energy of solvation -40.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds