Wall clock time and date at job start Wed Apr 1 2020 04:05:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30629 * 1 3 3 Si 1.86803 * 120.00480 * 2 1 4 4 H 1.48495 * 109.46934 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.46731 * 299.99946 * 3 2 1 6 6 H 1.48493 * 109.46827 * 59.99945 * 3 2 1 7 7 C 1.40141 * 119.99665 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.46144 * 120.00021 * 359.97438 * 7 2 1 10 10 O 1.21731 * 119.99783 * 0.02562 * 9 7 2 11 11 N 1.34775 * 119.99925 * 179.97438 * 9 7 2 12 12 C 1.38742 * 119.99844 * 180.02562 * 11 9 7 13 13 N 1.31739 * 119.79799 * 359.97438 * 12 11 9 14 14 C 1.33971 * 119.80560 * 180.02562 * 13 12 11 15 15 C 1.40506 * 120.86568 * 179.97438 * 14 13 12 16 16 C 1.36162 * 119.75246 * 180.02562 * 15 14 13 17 17 C 1.39288 * 120.91353 * 0.05314 * 16 15 14 18 18 C 1.36206 * 120.92452 * 359.95034 * 17 16 15 19 19 C 1.40422 * 119.76344 * 0.02562 * 18 17 16 20 20 N 1.34061 * 120.87732 * 180.22993 * 19 18 17 21 21 C 1.31733 * 119.78256 * 180.27531 * 20 19 18 22 22 N 1.38592 * 119.80340 * 179.77401 * 21 20 19 23 23 C 1.46499 * 119.99770 * 359.44907 * 22 21 20 24 24 H 1.09005 * 109.47207 * 345.27205 * 23 22 21 25 25 N 1.46897 * 109.47345 * 105.27503 * 23 22 21 26 26 C 1.53009 * 109.47337 * 225.27847 * 23 22 21 27 27 C 1.52992 * 109.47277 * 180.02562 * 26 23 22 28 28 C 1.53002 * 109.47364 * 179.97438 * 27 26 23 29 29 N 1.46893 * 109.47424 * 179.97438 * 28 27 26 30 30 H 0.97002 * 119.99475 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00132 * 0.02562 * 11 9 7 32 32 H 1.08001 * 120.11813 * 0.05388 * 15 14 13 33 33 H 1.07996 * 119.54330 * 180.02562 * 16 15 14 34 34 H 1.08006 * 119.54208 * 179.97438 * 17 16 15 35 35 H 1.08004 * 120.11884 * 180.02562 * 18 17 16 36 36 H 0.97001 * 120.00381 * 179.72994 * 22 21 20 37 37 H 1.00900 * 110.99621 * 60.00259 * 25 23 22 38 38 H 1.00894 * 111.00573 * 183.94986 * 25 23 22 39 39 H 1.09005 * 109.46448 * 299.99823 * 26 23 22 40 40 H 1.08996 * 109.46736 * 59.99584 * 26 23 22 41 41 H 1.09003 * 109.47079 * 299.99757 * 27 26 23 42 42 H 1.09001 * 109.47205 * 59.99554 * 27 26 23 43 43 H 1.09003 * 109.47052 * 300.00052 * 28 27 26 44 44 H 1.09005 * 109.46673 * 59.99535 * 28 27 26 45 45 H 1.00900 * 110.99846 * 56.04602 * 29 28 27 46 46 H 1.00902 * 110.99974 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2404 1.6177 0.0000 4 1 3.7004 1.3462 -0.0006 5 1 1.8817 2.3963 -1.2125 6 1 1.8817 2.3963 1.2125 7 6 2.0069 -1.2137 -0.0005 8 1 3.0869 -1.2138 -0.0001 9 6 1.2761 -2.4793 -0.0005 10 8 0.0588 -2.4792 -0.0005 11 7 1.9500 -3.6465 -0.0016 12 6 1.2562 -4.8480 -0.0021 13 7 -0.0612 -4.8433 -0.0011 14 6 -0.7313 -6.0034 -0.0011 15 6 -2.1362 -6.0243 0.0005 16 6 -2.7942 -7.2164 0.0010 17 6 -2.0938 -8.4203 0.0010 18 6 -0.7319 -8.4379 -0.0004 19 6 -0.0192 -7.2279 -0.0015 20 7 1.3214 -7.2191 -0.0075 21 6 1.9682 -6.0715 -0.0029 22 7 3.3541 -6.0619 -0.0044 23 6 4.0953 -7.3255 0.0010 24 1 3.4221 -8.1405 0.2670 25 7 4.6564 -7.5699 -1.3344 26 6 5.2300 -7.2469 1.0244 27 6 6.0045 -8.5663 1.0296 28 6 7.1396 -8.4874 2.0525 29 7 7.8828 -9.7544 2.0579 30 1 -0.4849 0.8401 -0.0004 31 1 2.9199 -3.6466 -0.0020 32 1 -2.6920 -5.0983 0.0009 33 1 -3.8741 -7.2285 0.0018 34 1 -2.6382 -9.3532 0.0019 35 1 -0.2020 -9.3790 -0.0008 36 1 3.8333 -5.2185 -0.0050 37 1 5.2844 -6.8276 -1.6041 38 1 5.1179 -8.4662 -1.3744 39 1 5.9032 -6.4318 0.7584 40 1 4.8137 -7.0655 2.0152 41 1 5.3315 -9.3815 1.2953 42 1 6.4208 -8.7471 0.0386 43 1 7.8125 -7.6722 1.7864 44 1 6.7235 -8.3063 3.0436 45 1 8.2240 -9.9775 1.1349 46 1 8.6383 -9.7276 2.7263 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170896564.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:58 Heat of formation + Delta-G solvation = 19.611885 kcal Electronic energy + Delta-G solvation = -29522.113575 eV Core-core repulsion = 25445.607027 eV Total energy + Delta-G solvation = -4076.506548 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.34069 -39.90453 -39.22492 -37.91353 -36.39253 -35.70535 -34.93103 -34.56315 -33.33564 -31.41571 -30.97529 -30.15419 -28.52713 -27.15230 -25.56810 -24.43717 -23.27181 -22.76284 -22.16221 -21.92118 -20.20005 -19.70880 -18.57890 -18.32584 -17.41531 -17.27618 -16.77061 -16.67831 -16.54209 -16.25987 -16.19107 -15.79000 -15.54796 -15.39065 -15.22518 -14.79121 -14.76342 -14.68290 -14.50600 -13.58701 -13.31730 -13.24130 -13.01484 -12.89880 -12.76866 -12.70431 -12.64664 -12.60548 -12.44898 -12.28432 -12.02483 -11.92055 -11.67537 -11.11182 -10.98776 -10.71522 -10.37498 -9.66007 -9.62258 -9.45160 -9.14050 -8.44374 -8.33736 -6.94066 -0.46066 -0.12465 1.15805 1.40174 1.40663 1.58803 1.86744 1.99329 2.12108 2.40682 2.48644 3.21120 3.22802 3.38607 3.56467 3.63054 3.70340 3.80488 3.86184 3.93817 4.07575 4.17584 4.26813 4.38551 4.41305 4.49479 4.55767 4.66406 4.75101 4.84101 4.90188 5.09879 5.21466 5.25456 5.27563 5.30880 5.35629 5.52806 5.56808 5.65291 5.80666 6.00692 6.12721 6.18614 6.21637 6.23799 6.57771 6.69163 6.72394 6.78359 6.96663 7.38868 8.38935 8.58640 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.006887 B = 0.003701 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4064.397235 B = 7564.078162 C =11245.658019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.027 3.973 3 Si 1.004 2.996 4 H -0.240 1.240 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.560 4.560 8 H 0.100 0.900 9 C 0.516 3.484 10 O -0.561 6.561 11 N -0.654 5.654 12 C 0.311 3.689 13 N -0.464 5.464 14 C 0.034 3.966 15 C -0.107 4.107 16 C -0.103 4.103 17 C -0.095 4.095 18 C -0.096 4.096 19 C 0.067 3.933 20 N -0.488 5.488 21 C 0.370 3.630 22 N -0.691 5.691 23 C 0.329 3.671 24 H 0.096 0.904 25 N -0.860 5.860 26 C -0.153 4.153 27 C -0.107 4.107 28 C 0.063 3.937 29 N -0.862 5.862 30 H 0.277 0.723 31 H 0.412 0.588 32 H 0.111 0.889 33 H 0.162 0.838 34 H 0.174 0.826 35 H 0.153 0.847 36 H 0.409 0.591 37 H 0.346 0.654 38 H 0.361 0.639 39 H 0.080 0.920 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.034 0.966 44 H 0.063 0.937 45 H 0.347 0.653 46 H 0.349 0.651 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.163 -18.025 1.403 22.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.189 4.189 3 Si 0.823 3.177 4 H -0.163 1.163 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.596 4.596 8 H 0.118 0.882 9 C 0.321 3.679 10 O -0.440 6.440 11 N -0.303 5.303 12 C 0.054 3.946 13 N -0.186 5.186 14 C -0.090 4.090 15 C -0.127 4.127 16 C -0.123 4.123 17 C -0.115 4.115 18 C -0.116 4.116 19 C -0.056 4.056 20 N -0.213 5.213 21 C 0.111 3.889 22 N -0.330 5.330 23 C 0.133 3.867 24 H 0.114 0.886 25 N -0.396 5.396 26 C -0.195 4.195 27 C -0.145 4.145 28 C -0.068 4.068 29 N -0.393 5.393 30 H 0.087 0.913 31 H 0.249 0.751 32 H 0.129 0.871 33 H 0.179 0.821 34 H 0.192 0.808 35 H 0.170 0.830 36 H 0.247 0.753 37 H 0.160 0.840 38 H 0.179 0.821 39 H 0.098 0.902 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.093 0.907 43 H 0.052 0.948 44 H 0.082 0.918 45 H 0.160 0.840 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 10.547 -18.416 1.361 21.266 hybrid contribution 2.364 2.177 0.182 3.218 sum 12.910 -16.239 1.544 20.803 Atomic orbital electron populations 1.70181 1.09728 1.29266 1.35217 1.27053 0.95542 1.05122 0.91214 0.84870 0.79550 0.74901 0.78375 1.16276 1.19593 1.19537 1.21397 0.95112 0.88878 1.54184 0.88235 1.19026 0.87719 0.83283 0.77898 1.90717 1.15171 1.85917 1.52161 1.43946 1.09744 1.02988 1.73630 1.19856 0.89747 0.87116 0.97837 1.68904 1.06342 1.28116 1.15229 1.19888 0.96438 0.88586 1.04041 1.20845 0.91006 0.99887 1.00969 1.21191 1.01745 0.90837 0.98549 1.21289 0.93240 0.99336 0.97638 1.20886 0.94586 0.95469 1.00641 1.19571 0.89140 0.94735 1.02181 1.68166 1.07765 1.24229 1.21150 1.19060 0.87488 0.88082 0.94309 1.44311 0.99555 1.09867 1.79227 1.21113 0.91706 0.85874 0.88025 0.88593 1.58751 1.44542 1.08622 1.27693 1.22487 0.97537 0.99282 1.00166 1.21450 0.97017 0.96298 0.99778 1.21729 0.95185 0.90424 0.99494 1.58678 1.32970 1.34326 1.13320 0.91332 0.75075 0.87080 0.82063 0.80838 0.82981 0.75278 0.84049 0.82141 0.90176 0.91641 0.91780 0.90654 0.94797 0.91847 0.83969 0.83752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.44 11.82 21.85 0.26 -49.18 16 2 C 0.03 1.45 5.50 85.33 0.47 1.92 16 3 Si 1.00 39.47 29.56 68.60 2.03 41.50 16 4 H -0.24 -8.45 7.11 99.48 0.71 -7.75 16 5 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 6 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 7 C -0.56 -30.50 9.53 24.79 0.24 -30.27 16 8 H 0.10 4.65 7.85 -2.91 -0.02 4.63 16 9 C 0.52 30.06 7.70 86.29 0.66 30.72 16 10 O -0.56 -38.25 13.26 -4.45 -0.06 -38.31 16 11 N -0.65 -30.22 5.35 -311.38 -1.67 -31.88 16 12 C 0.31 14.50 7.46 133.95 1.00 15.50 16 13 N -0.46 -24.52 7.94 -184.95 -1.47 -25.99 16 14 C 0.03 1.52 6.59 40.21 0.26 1.78 16 15 C -0.11 -4.16 9.98 22.34 0.22 -3.94 16 16 C -0.10 -2.82 9.95 22.04 0.22 -2.60 16 17 C -0.10 -2.21 9.95 22.05 0.22 -1.99 16 18 C -0.10 -2.73 9.97 22.33 0.22 -2.51 16 19 C 0.07 2.55 6.59 40.18 0.26 2.81 16 20 N -0.49 -18.06 8.99 -185.08 -1.66 -19.73 16 21 C 0.37 13.82 7.52 134.00 1.01 14.82 16 22 N -0.69 -18.51 5.29 -332.32 -1.76 -20.27 16 23 C 0.33 6.79 3.59 129.42 0.46 7.25 16 24 H 0.10 2.42 6.96 -2.38 -0.02 2.40 16 25 N -0.86 -15.16 9.34 -177.13 -1.65 -16.82 16 26 C -0.15 -2.27 5.20 30.59 0.16 -2.11 16 27 C -0.11 -1.29 5.14 30.59 0.16 -1.14 16 28 C 0.06 0.74 6.79 86.31 0.59 1.33 16 29 N -0.86 -9.36 9.62 -186.72 -1.80 -11.15 16 30 H 0.28 15.19 8.29 -92.71 -0.77 14.42 16 31 H 0.41 14.89 6.81 -92.71 -0.63 14.26 16 32 H 0.11 4.66 8.06 -2.91 -0.02 4.63 16 33 H 0.16 3.12 8.06 -2.91 -0.02 3.10 16 34 H 0.17 2.35 8.06 -2.91 -0.02 2.32 16 35 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 36 H 0.41 9.58 6.94 -92.71 -0.64 8.94 16 37 H 0.35 5.12 9.04 -89.69 -0.81 4.30 16 38 H 0.36 4.77 7.39 -89.70 -0.66 4.11 16 39 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 40 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 42 H 0.07 0.69 6.76 -2.39 -0.02 0.68 16 43 H 0.03 0.35 8.14 -2.39 -0.02 0.34 16 44 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 45 H 0.35 2.80 8.99 -89.69 -0.81 1.99 16 46 H 0.35 2.89 9.08 -89.69 -0.81 2.08 16 Total: -1.00 -86.85 385.01 -4.89 -91.74 By element: Atomic # 1 Polarization: 51.77 SS G_CDS: -3.26 Total: 48.51 kcal Atomic # 6 Polarization: 25.42 SS G_CDS: 6.16 Total: 31.58 kcal Atomic # 7 Polarization: -165.27 SS G_CDS: -9.75 Total: -175.02 kcal Atomic # 8 Polarization: -38.25 SS G_CDS: -0.06 Total: -38.31 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 2.03 Total: 41.50 kcal Total: -86.85 -4.89 -91.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170896564.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.354 kcal (2) G-P(sol) polarization free energy of solvation -86.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds