Wall clock time and date at job start Wed Apr 1 2020 04:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99841 * 3 2 1 5 5 H 1.48502 * 109.47495 * 30.00355 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00178 * 3 2 1 7 7 C 1.40131 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99807 * 180.27712 * 7 2 1 9 9 C 1.46146 * 120.00073 * 359.97438 * 7 2 1 10 10 O 1.21726 * 119.99838 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00072 * 180.02562 * 9 7 2 12 12 C 1.38735 * 120.00055 * 179.97438 * 11 9 7 13 13 N 1.31742 * 119.79644 * 359.73662 * 12 11 9 14 14 C 1.33973 * 119.79902 * 179.72711 * 13 12 11 15 15 C 1.40505 * 120.86709 * 180.31029 * 14 13 12 16 16 C 1.36174 * 119.74971 * 180.22118 * 15 14 13 17 17 C 1.39289 * 120.91830 * 0.02562 * 16 15 14 18 18 C 1.36203 * 120.91586 * 359.97438 * 17 16 15 19 19 C 1.40426 * 119.76748 * 0.02562 * 18 17 16 20 20 N 1.34052 * 120.86619 * 180.02562 * 19 18 17 21 21 C 1.31733 * 119.78427 * 179.97438 * 20 19 18 22 22 N 1.38592 * 119.80696 * 180.02562 * 21 20 19 23 23 C 1.46499 * 119.99777 * 359.97064 * 22 21 20 24 24 H 1.09001 * 109.47093 * 15.00617 * 23 22 21 25 25 N 1.46892 * 109.47536 * 255.00450 * 23 22 21 26 26 C 1.53001 * 109.46786 * 135.00399 * 23 22 21 27 27 C 1.53008 * 109.47143 * 185.00426 * 26 23 22 28 28 C 1.53001 * 109.47143 * 179.97438 * 27 26 23 29 29 N 1.46901 * 109.46839 * 179.97438 * 28 27 26 30 30 H 0.97000 * 120.00895 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00047 * 0.02562 * 11 9 7 32 32 H 1.08000 * 120.13005 * 0.20456 * 15 14 13 33 33 H 1.07996 * 119.53893 * 179.97438 * 16 15 14 34 34 H 1.07999 * 119.54174 * 179.97438 * 17 16 15 35 35 H 1.08001 * 120.11797 * 180.02562 * 18 17 16 36 36 H 0.96994 * 120.00250 * 179.97438 * 22 21 20 37 37 H 1.00902 * 111.00285 * 300.00052 * 25 23 22 38 38 H 1.00902 * 111.00005 * 63.95654 * 25 23 22 39 39 H 1.09005 * 109.47239 * 304.99908 * 26 23 22 40 40 H 1.08998 * 109.47171 * 65.00459 * 26 23 22 41 41 H 1.09005 * 109.46630 * 299.99855 * 27 26 23 42 42 H 1.08998 * 109.47061 * 59.99965 * 27 26 23 43 43 H 1.08996 * 109.47029 * 299.99599 * 28 27 26 44 44 H 1.08996 * 109.46870 * 59.99595 * 28 27 26 45 45 H 1.00900 * 110.99742 * 56.04711 * 29 28 27 46 46 H 1.00901 * 110.99481 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 2.4877 2.0466 -1.4001 5 1 1.4376 2.6527 0.7001 6 1 3.5378 1.4403 0.7000 7 6 2.0070 -1.2135 -0.0005 8 1 3.0871 -1.2134 0.0040 9 6 1.2764 -2.4792 -0.0005 10 8 0.0591 -2.4793 -0.0005 11 7 1.9503 -3.6464 -0.0005 12 6 1.2567 -4.8479 0.0000 13 7 -0.0607 -4.8433 0.0058 14 6 -0.7306 -6.0036 0.0007 15 6 -2.1354 -6.0248 0.0002 16 6 -2.7932 -7.2172 -0.0004 17 6 -2.0926 -8.4210 0.0001 18 6 -0.7306 -8.4381 0.0006 19 6 -0.0182 -7.2279 0.0013 20 7 1.3222 -7.2190 0.0013 21 6 1.9690 -6.0713 0.0014 22 7 3.3549 -6.0616 0.0009 23 6 4.0962 -7.3251 0.0009 24 1 3.4239 -8.1409 -0.2648 25 7 4.6536 -7.5658 1.3385 26 6 5.2338 -7.2489 -1.0195 27 6 5.9299 -8.6085 -1.1098 28 6 7.0670 -8.5325 -2.1306 29 7 7.7356 -9.8376 -2.2168 30 1 -0.4851 0.8400 0.0004 31 1 2.9203 -3.6464 -0.0002 32 1 -2.6916 -5.0991 0.0005 33 1 -3.8731 -7.2295 -0.0004 34 1 -2.6368 -9.3539 0.0000 35 1 -0.2004 -9.3790 0.0006 36 1 3.8339 -5.2182 0.0006 37 1 5.2808 -6.8228 1.6080 38 1 3.9193 -7.6844 2.0203 39 1 4.8288 -6.9826 -1.9959 40 1 5.9532 -6.4925 -0.7058 41 1 6.3348 -8.8748 -0.1334 42 1 5.2105 -9.3649 -1.4234 43 1 6.6616 -8.2663 -3.1068 44 1 7.7864 -7.7759 -1.8174 45 1 7.0764 -10.5674 -2.4426 46 1 8.4909 -9.8134 -2.8854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170896565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:03 Heat of formation + Delta-G solvation = 44.711454 kcal Electronic energy + Delta-G solvation = -29540.430264 eV Core-core repulsion = 25465.012116 eV Total energy + Delta-G solvation = -4075.418149 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.96657 -38.47487 -37.85213 -36.56441 -35.48435 -34.16996 -33.51099 -32.61326 -31.90261 -30.89564 -29.64470 -28.79160 -26.64344 -26.21252 -24.19284 -23.13925 -22.06956 -21.64279 -21.03984 -20.42669 -18.65801 -18.43523 -17.14153 -16.73859 -16.36191 -15.95418 -15.64643 -15.50402 -15.29282 -15.09654 -14.96885 -14.78486 -14.68096 -14.09293 -13.91413 -13.57954 -13.45337 -13.00515 -12.79141 -12.61955 -12.14224 -11.76940 -11.71615 -11.58371 -11.44603 -11.32902 -11.31175 -11.17703 -10.96371 -10.91239 -10.76446 -10.62036 -10.36618 -9.94625 -9.43997 -9.21925 -9.00743 -8.90571 -8.66767 -7.83957 -7.56975 -7.04865 -6.38425 -4.88735 0.84695 1.20647 2.51145 3.02392 3.06381 3.09208 3.12733 3.27801 3.72877 4.06928 4.22856 4.36572 4.41747 4.52838 4.63501 4.70697 4.76450 4.84333 5.05074 5.12780 5.16122 5.23066 5.33602 5.34611 5.51299 5.57545 5.61455 5.68523 5.70513 5.81905 5.90556 6.06979 6.22970 6.33715 6.44891 6.62304 6.73299 6.79198 6.81141 6.88043 7.03387 7.09798 7.21036 7.22142 7.25828 7.44049 7.72197 7.96176 8.07899 8.45602 8.77839 9.09589 10.34105 10.51433 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.006953 B = 0.003690 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4025.876052 B = 7585.827553 C =11192.818104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.086 3.914 3 Si 0.914 3.086 4 H -0.270 1.270 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.538 4.538 8 H 0.071 0.929 9 C 0.529 3.471 10 O -0.504 6.504 11 N -0.660 5.660 12 C 0.338 3.662 13 N -0.411 5.411 14 C 0.077 3.923 15 C -0.073 4.073 16 C -0.124 4.124 17 C -0.118 4.118 18 C -0.091 4.091 19 C 0.075 3.925 20 N -0.495 5.495 21 C 0.355 3.645 22 N -0.739 5.739 23 C 0.313 3.687 24 H 0.115 0.885 25 N -0.837 5.837 26 C -0.120 4.120 27 C -0.106 4.106 28 C 0.059 3.941 29 N -0.852 5.852 30 H 0.273 0.727 31 H 0.393 0.607 32 H 0.134 0.866 33 H 0.124 0.876 34 H 0.122 0.878 35 H 0.126 0.874 36 H 0.399 0.601 37 H 0.337 0.663 38 H 0.346 0.654 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.023 0.977 44 H 0.070 0.930 45 H 0.340 0.660 46 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.379 -15.634 -1.971 17.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.385 5.385 2 C -0.136 4.136 3 Si 0.738 3.262 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.575 4.575 8 H 0.090 0.910 9 C 0.333 3.667 10 O -0.379 6.379 11 N -0.308 5.308 12 C 0.081 3.919 13 N -0.134 5.134 14 C -0.047 4.047 15 C -0.093 4.093 16 C -0.145 4.145 17 C -0.138 4.138 18 C -0.111 4.111 19 C -0.048 4.048 20 N -0.219 5.219 21 C 0.097 3.903 22 N -0.382 5.382 23 C 0.118 3.882 24 H 0.133 0.867 25 N -0.368 5.368 26 C -0.160 4.160 27 C -0.145 4.145 28 C -0.072 4.072 29 N -0.381 5.381 30 H 0.084 0.916 31 H 0.227 0.773 32 H 0.152 0.848 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.144 0.856 36 H 0.236 0.764 37 H 0.150 0.850 38 H 0.159 0.841 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.042 0.958 44 H 0.089 0.911 45 H 0.152 0.848 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.639 -16.206 -1.507 17.979 hybrid contribution 0.422 2.139 -0.787 2.318 sum 8.061 -14.067 -2.294 16.374 Atomic orbital electron populations 1.69970 1.07128 1.27953 1.33406 1.25719 0.94728 1.00473 0.92637 0.86264 0.80054 0.80881 0.78995 1.19563 1.20250 1.18784 1.20782 0.93656 0.88693 1.54341 0.91050 1.18609 0.88043 0.81476 0.78599 1.90762 1.12870 1.84417 1.49801 1.44632 1.09070 1.03812 1.73287 1.19721 0.89732 0.86332 0.96080 1.69134 1.04513 1.25315 1.14430 1.19508 0.95348 0.88430 1.01389 1.20774 0.91661 0.98819 0.98010 1.20752 0.99901 0.92027 1.01801 1.20724 0.93842 0.97998 1.01283 1.20489 0.93606 0.95948 1.01056 1.19084 0.88637 0.94230 1.02849 1.68020 1.08114 1.24868 1.20898 1.19305 0.86376 0.89574 0.95081 1.45686 1.01487 1.09989 1.81006 1.21593 0.91225 0.86117 0.89267 0.86745 1.59428 1.22898 1.49841 1.04649 1.21783 0.96990 0.98406 0.98784 1.21411 0.96258 0.96195 1.00623 1.21845 0.96391 0.91421 0.97533 1.58719 1.15494 1.06150 1.57785 0.91587 0.77276 0.84817 0.85829 0.85961 0.85646 0.76423 0.84963 0.84056 0.91203 0.91587 0.89609 0.92293 0.95843 0.91149 0.84805 0.84873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.68 11.82 55.55 0.66 -21.02 16 2 C 0.09 2.26 5.50 -17.35 -0.10 2.17 16 3 Si 0.91 18.99 29.56 -169.99 -5.02 13.96 16 4 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 7 C -0.54 -14.16 9.53 -35.70 -0.34 -14.50 16 8 H 0.07 1.66 7.85 -52.48 -0.41 1.25 16 9 C 0.53 14.36 7.70 -13.09 -0.10 14.26 16 10 O -0.50 -15.80 13.26 5.17 0.07 -15.73 16 11 N -0.66 -14.16 5.35 -12.41 -0.07 -14.22 16 12 C 0.34 7.20 7.46 -154.90 -1.16 6.04 16 13 N -0.41 -9.84 7.94 -9.81 -0.08 -9.92 16 14 C 0.08 1.60 6.59 -84.78 -0.56 1.04 16 15 C -0.07 -1.31 9.98 -39.47 -0.39 -1.70 16 16 C -0.12 -1.76 9.95 -39.93 -0.40 -2.15 16 17 C -0.12 -1.53 9.95 -39.92 -0.40 -1.93 16 18 C -0.09 -1.34 9.97 -39.49 -0.39 -1.73 16 19 C 0.07 1.36 6.59 -84.77 -0.56 0.80 16 20 N -0.49 -8.56 8.99 -9.85 -0.09 -8.65 16 21 C 0.36 6.12 7.52 -155.05 -1.17 4.95 16 22 N -0.74 -9.36 5.29 -56.40 -0.30 -9.65 16 23 C 0.31 3.36 3.47 -127.21 -0.44 2.92 16 24 H 0.11 1.47 6.96 -51.93 -0.36 1.11 16 25 N -0.84 -8.03 8.90 -7.35 -0.07 -8.10 16 26 C -0.12 -1.08 5.17 -26.73 -0.14 -1.21 16 27 C -0.11 -0.92 5.36 -26.73 -0.14 -1.06 16 28 C 0.06 0.47 6.79 -3.82 -0.03 0.44 16 29 N -0.85 -6.36 9.62 -10.37 -0.10 -6.46 16 30 H 0.27 7.10 8.29 -40.82 -0.34 6.76 16 31 H 0.39 6.71 6.81 -40.82 -0.28 6.43 16 32 H 0.13 2.47 8.06 -52.49 -0.42 2.05 16 33 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 36 H 0.40 4.52 6.94 -40.82 -0.28 4.24 16 37 H 0.34 2.85 9.04 -39.29 -0.36 2.49 16 38 H 0.35 3.64 9.08 -39.29 -0.36 3.28 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 0.85 7.75 -51.93 -0.40 0.44 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.34 2.22 8.99 -39.29 -0.35 1.87 16 46 H 0.34 2.00 9.08 -39.29 -0.36 1.64 16 LS Contribution 387.31 15.07 5.84 5.84 Total: -1.00 -34.55 387.31 -11.56 -46.12 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -6.10 Total: 19.52 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: -6.31 Total: 8.32 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -0.04 Total: -78.03 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: 0.07 Total: -15.73 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.02 Total: 13.96 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.55 -11.56 -46.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170896565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.827 kcal (2) G-P(sol) polarization free energy of solvation -34.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds