Wall clock time and date at job start Wed Apr 1 2020 04:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86800 * 119.99576 * 2 1 4 4 H 1.48501 * 109.47483 * 269.99841 * 3 2 1 5 5 H 1.48502 * 109.47495 * 30.00355 * 3 2 1 6 6 H 1.48507 * 109.46904 * 150.00178 * 3 2 1 7 7 C 1.40131 * 120.00325 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99807 * 180.27712 * 7 2 1 9 9 C 1.46146 * 120.00073 * 359.97438 * 7 2 1 10 10 O 1.21726 * 119.99838 * 0.02562 * 9 7 2 11 11 N 1.34777 * 120.00072 * 180.02562 * 9 7 2 12 12 C 1.38735 * 120.00055 * 179.97438 * 11 9 7 13 13 N 1.31742 * 119.79644 * 359.73662 * 12 11 9 14 14 C 1.33973 * 119.79902 * 179.72711 * 13 12 11 15 15 C 1.40505 * 120.86709 * 180.31029 * 14 13 12 16 16 C 1.36174 * 119.74971 * 180.22118 * 15 14 13 17 17 C 1.39289 * 120.91830 * 0.02562 * 16 15 14 18 18 C 1.36203 * 120.91586 * 359.97438 * 17 16 15 19 19 C 1.40426 * 119.76748 * 0.02562 * 18 17 16 20 20 N 1.34052 * 120.86619 * 180.02562 * 19 18 17 21 21 C 1.31733 * 119.78427 * 179.97438 * 20 19 18 22 22 N 1.38592 * 119.80696 * 180.02562 * 21 20 19 23 23 C 1.46499 * 119.99777 * 359.97064 * 22 21 20 24 24 H 1.09001 * 109.47093 * 15.00617 * 23 22 21 25 25 N 1.46892 * 109.47536 * 255.00450 * 23 22 21 26 26 C 1.53001 * 109.46786 * 135.00399 * 23 22 21 27 27 C 1.53008 * 109.47143 * 185.00426 * 26 23 22 28 28 C 1.53001 * 109.47143 * 179.97438 * 27 26 23 29 29 N 1.46901 * 109.46839 * 179.97438 * 28 27 26 30 30 H 0.97000 * 120.00895 * 359.97438 * 1 2 3 31 31 H 0.96999 * 120.00047 * 0.02562 * 11 9 7 32 32 H 1.08000 * 120.13005 * 0.20456 * 15 14 13 33 33 H 1.07996 * 119.53893 * 179.97438 * 16 15 14 34 34 H 1.07999 * 119.54174 * 179.97438 * 17 16 15 35 35 H 1.08001 * 120.11797 * 180.02562 * 18 17 16 36 36 H 0.96994 * 120.00250 * 179.97438 * 22 21 20 37 37 H 1.00902 * 111.00285 * 300.00052 * 25 23 22 38 38 H 1.00902 * 111.00005 * 63.95654 * 25 23 22 39 39 H 1.09005 * 109.47239 * 304.99908 * 26 23 22 40 40 H 1.08998 * 109.47171 * 65.00459 * 26 23 22 41 41 H 1.09005 * 109.46630 * 299.99855 * 27 26 23 42 42 H 1.08998 * 109.47061 * 59.99965 * 27 26 23 43 43 H 1.08996 * 109.47029 * 299.99599 * 28 27 26 44 44 H 1.08996 * 109.46870 * 59.99595 * 28 27 26 45 45 H 1.00900 * 110.99742 * 56.04711 * 29 28 27 46 46 H 1.00901 * 110.99481 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2401 1.6178 0.0000 4 1 2.4877 2.0466 -1.4001 5 1 1.4376 2.6527 0.7001 6 1 3.5378 1.4403 0.7000 7 6 2.0070 -1.2135 -0.0005 8 1 3.0871 -1.2134 0.0040 9 6 1.2764 -2.4792 -0.0005 10 8 0.0591 -2.4793 -0.0005 11 7 1.9503 -3.6464 -0.0005 12 6 1.2567 -4.8479 0.0000 13 7 -0.0607 -4.8433 0.0058 14 6 -0.7306 -6.0036 0.0007 15 6 -2.1354 -6.0248 0.0002 16 6 -2.7932 -7.2172 -0.0004 17 6 -2.0926 -8.4210 0.0001 18 6 -0.7306 -8.4381 0.0006 19 6 -0.0182 -7.2279 0.0013 20 7 1.3222 -7.2190 0.0013 21 6 1.9690 -6.0713 0.0014 22 7 3.3549 -6.0616 0.0009 23 6 4.0962 -7.3251 0.0009 24 1 3.4239 -8.1409 -0.2648 25 7 4.6536 -7.5658 1.3385 26 6 5.2338 -7.2489 -1.0195 27 6 5.9299 -8.6085 -1.1098 28 6 7.0670 -8.5325 -2.1306 29 7 7.7356 -9.8376 -2.2168 30 1 -0.4851 0.8400 0.0004 31 1 2.9203 -3.6464 -0.0002 32 1 -2.6916 -5.0991 0.0005 33 1 -3.8731 -7.2295 -0.0004 34 1 -2.6368 -9.3539 0.0000 35 1 -0.2004 -9.3790 0.0006 36 1 3.8339 -5.2182 0.0006 37 1 5.2808 -6.8228 1.6080 38 1 3.9193 -7.6844 2.0203 39 1 4.8288 -6.9826 -1.9959 40 1 5.9532 -6.4925 -0.7058 41 1 6.3348 -8.8748 -0.1334 42 1 5.2105 -9.3649 -1.4234 43 1 6.6616 -8.2663 -3.1068 44 1 7.7864 -7.7759 -1.8174 45 1 7.0764 -10.5674 -2.4426 46 1 8.4909 -9.8134 -2.8854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170896565.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:06:02 Heat of formation + Delta-G solvation = 16.117809 kcal Electronic energy + Delta-G solvation = -29541.670178 eV Core-core repulsion = 25465.012116 eV Total energy + Delta-G solvation = -4076.658062 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.37943 -39.92941 -39.18918 -37.82209 -36.39568 -35.73378 -34.89770 -34.57113 -33.17928 -31.64898 -30.99705 -30.10260 -28.54800 -27.11206 -25.58514 -24.43941 -23.27123 -22.62162 -22.16683 -21.92074 -20.23422 -19.71616 -18.56001 -18.37550 -17.39748 -17.19951 -16.97983 -16.61836 -16.55259 -16.29285 -15.98658 -15.80947 -15.69256 -15.59823 -15.24841 -14.80711 -14.79157 -14.52802 -14.33485 -13.54937 -13.27791 -13.26997 -12.97253 -12.77868 -12.74175 -12.63256 -12.61822 -12.54488 -12.43498 -12.18372 -12.02844 -11.87290 -11.58208 -11.12786 -11.00969 -10.77365 -10.47702 -10.06052 -9.58302 -9.45672 -9.17230 -8.47823 -8.35403 -6.96094 -0.49543 -0.15906 1.12305 1.39240 1.40813 1.56451 1.89945 1.95837 2.10419 2.38698 2.46718 3.18568 3.19298 3.38553 3.57273 3.60687 3.64135 3.72765 3.96627 4.00761 4.10835 4.15355 4.35647 4.38528 4.48776 4.53903 4.63175 4.71016 4.81544 4.95324 4.95871 5.07217 5.23342 5.26940 5.31329 5.35553 5.50948 5.51435 5.55463 5.65116 5.75025 5.95592 6.03466 6.12786 6.20131 6.26411 6.49277 6.61260 6.70082 6.76355 6.92312 7.36345 8.36686 8.56591 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.006953 B = 0.003690 C = 0.002501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4025.876052 B = 7585.827553 C =11192.818104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.028 3.972 3 Si 1.003 2.997 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.243 1.243 7 C -0.561 4.561 8 H 0.099 0.901 9 C 0.516 3.484 10 O -0.561 6.561 11 N -0.654 5.654 12 C 0.310 3.690 13 N -0.465 5.465 14 C 0.035 3.965 15 C -0.108 4.108 16 C -0.103 4.103 17 C -0.095 4.095 18 C -0.095 4.095 19 C 0.067 3.933 20 N -0.489 5.489 21 C 0.363 3.637 22 N -0.721 5.721 23 C 0.316 3.684 24 H 0.098 0.902 25 N -0.828 5.828 26 C -0.112 4.112 27 C -0.097 4.097 28 C 0.061 3.939 29 N -0.861 5.861 30 H 0.277 0.723 31 H 0.412 0.588 32 H 0.110 0.890 33 H 0.161 0.839 34 H 0.174 0.826 35 H 0.154 0.846 36 H 0.406 0.594 37 H 0.347 0.653 38 H 0.343 0.657 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.345 0.655 46 H 0.348 0.652 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.109 -17.673 -2.053 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.189 4.189 3 Si 0.822 3.178 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.166 1.166 7 C -0.597 4.597 8 H 0.117 0.883 9 C 0.321 3.679 10 O -0.440 6.440 11 N -0.303 5.303 12 C 0.053 3.947 13 N -0.187 5.187 14 C -0.088 4.088 15 C -0.128 4.128 16 C -0.123 4.123 17 C -0.115 4.115 18 C -0.115 4.115 19 C -0.056 4.056 20 N -0.215 5.215 21 C 0.104 3.896 22 N -0.364 5.364 23 C 0.122 3.878 24 H 0.116 0.884 25 N -0.359 5.359 26 C -0.152 4.152 27 C -0.136 4.136 28 C -0.070 4.070 29 N -0.391 5.391 30 H 0.087 0.913 31 H 0.249 0.751 32 H 0.128 0.872 33 H 0.179 0.821 34 H 0.191 0.809 35 H 0.171 0.829 36 H 0.244 0.756 37 H 0.161 0.839 38 H 0.156 0.844 39 H 0.084 0.916 40 H 0.098 0.902 41 H 0.095 0.905 42 H 0.073 0.927 43 H 0.043 0.957 44 H 0.090 0.910 45 H 0.157 0.843 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 9.456 -18.320 -1.589 20.678 hybrid contribution -0.209 2.523 -0.751 2.641 sum 9.248 -15.797 -2.340 18.454 Atomic orbital electron populations 1.70164 1.09714 1.29365 1.35131 1.27036 0.95528 1.05104 0.91193 0.84930 0.78827 0.74579 0.79454 1.18613 1.20116 1.16630 1.21371 0.95113 0.88923 1.54253 0.88263 1.19008 0.87704 0.83292 0.77921 1.90718 1.15167 1.85912 1.52172 1.43951 1.09760 1.03017 1.73597 1.19912 0.89755 0.87246 0.97778 1.68908 1.06463 1.28162 1.15161 1.19877 0.96403 0.88597 1.03931 1.20851 0.91079 0.99863 1.01006 1.21199 1.01758 0.90860 0.98439 1.21294 0.93306 0.99307 0.97593 1.20889 0.94552 0.95490 1.00566 1.19537 0.89135 0.94664 1.02266 1.68171 1.07803 1.24088 1.21411 1.19195 0.87867 0.88035 0.94497 1.45829 0.99659 1.11312 1.79583 1.21678 0.91262 0.84469 0.90383 0.88393 1.59404 1.22574 1.49966 1.03978 1.21714 0.96438 0.99156 0.97851 1.21302 0.96295 0.95628 1.00349 1.21787 0.96101 0.91774 0.97296 1.58714 1.15960 1.06059 1.58369 0.91305 0.75067 0.87158 0.82127 0.80855 0.82871 0.75633 0.83877 0.84436 0.91622 0.90217 0.90528 0.92743 0.95655 0.91039 0.84276 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -49.06 11.82 21.85 0.26 -48.80 16 2 C 0.03 1.48 5.50 85.33 0.47 1.95 16 3 Si 1.00 39.15 29.56 68.60 2.03 41.18 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.28 -10.59 7.11 99.48 0.71 -9.89 16 6 H -0.24 -8.61 7.11 99.48 0.71 -7.90 16 7 C -0.56 -30.23 9.53 24.78 0.24 -30.00 16 8 H 0.10 4.58 7.85 -2.91 -0.02 4.56 16 9 C 0.52 29.62 7.70 86.30 0.66 30.29 16 10 O -0.56 -37.79 13.26 -4.43 -0.06 -37.85 16 11 N -0.65 -29.45 5.35 -311.38 -1.67 -31.12 16 12 C 0.31 13.94 7.46 133.95 1.00 14.94 16 13 N -0.46 -23.93 7.94 -184.96 -1.47 -25.40 16 14 C 0.04 1.53 6.59 40.21 0.26 1.79 16 15 C -0.11 -4.08 9.98 22.34 0.22 -3.86 16 16 C -0.10 -2.69 9.95 22.04 0.22 -2.47 16 17 C -0.10 -2.10 9.95 22.05 0.22 -1.88 16 18 C -0.10 -2.55 9.97 22.33 0.22 -2.33 16 19 C 0.07 2.43 6.59 40.18 0.26 2.69 16 20 N -0.49 -16.93 8.99 -185.08 -1.66 -18.60 16 21 C 0.36 12.77 7.52 134.01 1.01 13.78 16 22 N -0.72 -17.95 5.29 -332.34 -1.76 -19.70 16 23 C 0.32 6.42 3.47 129.42 0.45 6.87 16 24 H 0.10 2.40 6.96 -2.39 -0.02 2.38 16 25 N -0.83 -14.64 8.90 -177.16 -1.58 -16.21 16 26 C -0.11 -1.82 5.17 30.60 0.16 -1.66 16 27 C -0.10 -1.52 5.36 30.60 0.16 -1.36 16 28 C 0.06 0.86 6.79 86.30 0.59 1.45 16 29 N -0.86 -11.40 9.62 -186.72 -1.80 -13.19 16 30 H 0.28 15.13 8.29 -92.71 -0.77 14.36 16 31 H 0.41 14.45 6.81 -92.71 -0.63 13.82 16 32 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 33 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.17 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.41 8.91 6.94 -92.71 -0.64 8.27 16 37 H 0.35 5.19 9.04 -89.69 -0.81 4.38 16 38 H 0.34 6.78 9.08 -89.69 -0.81 5.96 16 39 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 41 H 0.08 1.37 7.75 -2.38 -0.02 1.35 16 42 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 43 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.34 3.97 8.99 -89.69 -0.81 3.16 16 46 H 0.35 3.51 9.08 -89.69 -0.81 2.70 16 Total: -1.00 -83.13 387.31 -4.97 -88.11 By element: Atomic # 1 Polarization: 54.81 SS G_CDS: -3.42 Total: 51.40 kcal Atomic # 6 Polarization: 24.04 SS G_CDS: 6.15 Total: 30.19 kcal Atomic # 7 Polarization: -163.34 SS G_CDS: -9.67 Total: -173.02 kcal Atomic # 8 Polarization: -37.79 SS G_CDS: -0.06 Total: -37.85 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 2.03 Total: 41.18 kcal Total: -83.13 -4.97 -88.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170896565.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.225 kcal (2) G-P(sol) polarization free energy of solvation -83.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds