Wall clock time and date at job start Wed Apr 1 2020 04:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 120.00040 * 2 1 4 4 H 1.48502 * 109.46940 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46948 * 300.00276 * 3 2 1 6 6 H 1.48498 * 109.46741 * 60.00140 * 3 2 1 7 7 C 1.38816 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00072 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99733 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00130 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47472 * 180.02562 * 10 9 7 12 12 C 1.35343 * 126.75239 * 95.00303 * 11 10 9 13 13 N 1.35315 * 106.17825 * 180.02562 * 12 11 10 14 14 C 1.46498 * 125.87173 * 179.73736 * 13 12 11 15 15 H 1.09001 * 109.50148 * 205.06259 * 14 13 12 16 16 C 1.53043 * 109.49847 * 84.99769 * 14 13 12 17 17 C 1.53044 * 109.53681 * 178.68602 * 16 14 13 18 18 C 1.53190 * 109.31519 * 61.36613 * 17 16 14 19 19 N 1.46930 * 108.77197 * 305.36203 * 18 17 16 20 20 C 1.34770 * 120.63128 * 233.62666 * 19 18 17 21 21 O 1.21702 * 120.00140 * 173.21250 * 20 19 18 22 22 C 1.46681 * 120.00043 * 353.21867 * 20 19 18 23 23 C 1.37872 * 126.23503 * 155.97652 * 22 20 19 24 24 C 1.39835 * 107.08501 * 179.84668 * 23 22 20 25 25 C 1.35444 * 107.86360 * 0.41466 * 24 23 22 26 26 N 1.35530 * 108.87512 * 359.74207 * 25 24 23 27 27 H 0.97004 * 125.68322 * 179.97438 * 26 25 24 28 28 C 1.46931 * 118.73864 * 53.61288 * 19 18 17 29 29 N 1.28716 * 108.26386 * 359.97438 * 13 12 11 30 30 N 1.28635 * 110.17551 * 0.02562 * 29 13 12 31 31 H 0.96998 * 120.00174 * 359.97438 * 1 2 3 32 32 H 0.97004 * 119.99618 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.46881 * 59.99927 * 10 9 7 34 34 H 1.09000 * 109.47653 * 300.00594 * 10 9 7 35 35 H 1.08003 * 126.91717 * 0.02562 * 12 11 10 36 36 H 1.08997 * 109.46037 * 298.70229 * 16 14 13 37 37 H 1.09002 * 109.45698 * 58.67898 * 16 14 13 38 38 H 1.09004 * 109.49588 * 181.31716 * 17 16 14 39 39 H 1.08999 * 109.49593 * 301.40986 * 17 16 14 40 40 H 1.09000 * 109.58738 * 65.14635 * 18 17 16 41 41 H 1.09001 * 109.58613 * 185.43924 * 18 17 16 42 42 H 1.08006 * 126.45536 * 359.96178 * 23 22 20 43 43 H 1.07998 * 126.06574 * 180.13900 * 24 23 22 44 44 H 1.08003 * 125.56237 * 179.77817 * 25 24 23 45 45 H 1.08998 * 109.58603 * 186.59986 * 28 19 18 46 46 H 1.09001 * 109.59042 * 66.17541 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0788 -4.8022 -0.0021 12 6 0.6241 -5.4785 -1.0826 13 7 -0.2309 -6.4144 -0.6092 14 6 -0.9751 -7.3841 -1.4167 15 1 -1.8729 -7.6914 -0.8804 16 6 -0.0959 -8.6079 -1.6842 17 6 -0.8837 -9.6356 -2.5000 18 6 -1.2775 -9.0196 -3.8462 19 7 -1.9995 -7.7641 -3.5986 20 6 -3.2161 -7.5536 -4.1388 21 8 -3.8571 -6.5666 -3.8289 22 6 -3.7679 -8.5142 -5.1003 23 6 -5.1034 -8.7112 -5.3804 24 6 -5.1756 -9.7126 -6.3537 25 6 -3.9117 -10.1078 -6.6379 26 7 -3.0469 -9.3873 -5.8830 27 1 -2.0807 -9.4729 -5.8924 28 6 -1.3700 -6.7426 -2.7507 29 7 -0.2818 -6.3031 0.6721 30 7 0.4879 -5.3505 1.0656 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 0.0002 33 1 2.6854 -3.7148 0.8878 34 1 2.6841 -3.7141 -0.8921 35 1 0.8900 -5.3059 -2.1151 36 1 0.7899 -8.3037 -2.2417 37 1 0.2065 -9.0520 -0.7358 38 1 -0.2649 -10.5166 -2.6701 39 1 -1.7826 -9.9217 -1.9539 40 1 -0.3807 -8.8161 -4.4313 41 1 -1.9200 -9.7117 -4.3907 42 1 -5.9366 -8.1889 -4.9338 43 1 -6.0792 -10.1048 -6.7965 44 1 -3.6376 -10.8719 -7.3503 45 1 -2.0754 -5.9312 -2.5714 46 1 -0.4807 -6.3534 -3.2464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185864707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:26 Heat of formation + Delta-G solvation = 150.092070 kcal Electronic energy + Delta-G solvation = -29428.365508 eV Core-core repulsion = 25357.517006 eV Total energy + Delta-G solvation = -4070.848502 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.05061 -41.99000 -40.07922 -38.02877 -35.29244 -34.46226 -32.87833 -31.99344 -31.67464 -30.57957 -29.90310 -29.41697 -26.38505 -25.85067 -24.63177 -23.01728 -22.78582 -21.99324 -21.35445 -20.71337 -20.58032 -20.31268 -18.41507 -17.45693 -17.02678 -16.84439 -16.23683 -16.04595 -15.61362 -15.27758 -14.75565 -14.60556 -14.59517 -14.40371 -14.18395 -13.90032 -13.69210 -13.54901 -13.43125 -13.09136 -13.00396 -12.73945 -12.62773 -12.37435 -11.87358 -11.77250 -11.65490 -11.49477 -11.23119 -10.86304 -10.80022 -10.58895 -10.41342 -10.03834 -9.88929 -9.70592 -9.47007 -9.33517 -8.86728 -8.82542 -8.70678 -6.88351 -5.70214 -3.00198 1.02648 1.79836 1.98661 2.24720 2.54190 2.62417 2.92569 2.93944 3.48067 3.53057 3.55904 3.82833 3.95083 4.04425 4.14936 4.22559 4.48247 4.56337 4.60592 4.63106 4.67576 4.83690 4.90656 4.94892 4.98209 5.09580 5.10794 5.26673 5.29843 5.42400 5.49941 5.56117 5.61455 5.65735 5.66339 5.78464 5.87122 6.20566 6.22458 6.41584 6.43304 6.66715 6.72071 6.76235 6.80785 6.85814 7.62236 7.74581 8.46678 8.84871 9.58446 10.14361 10.50111 11.52488 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.002250 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.072347 B =12440.693767 C =13661.675902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.240 4.240 8 H 0.074 0.926 9 N -0.726 5.726 10 C 0.233 3.767 11 C -0.002 4.002 12 C -0.047 4.047 13 N -0.294 5.294 14 C 0.137 3.863 15 H 0.116 0.884 16 C -0.130 4.130 17 C -0.128 4.128 18 C 0.083 3.917 19 N -0.612 5.612 20 C 0.592 3.408 21 O -0.513 6.513 22 C -0.054 4.054 23 C -0.105 4.105 24 C -0.209 4.209 25 C 0.019 3.981 26 N -0.544 5.544 27 H 0.419 0.581 28 C 0.106 3.894 29 N -0.093 5.093 30 N -0.252 5.252 31 H 0.255 0.745 32 H 0.386 0.614 33 H 0.039 0.961 34 H 0.037 0.963 35 H 0.186 0.814 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.172 0.828 45 H 0.112 0.888 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.597 -29.855 -16.345 34.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.371 4.371 8 H 0.092 0.908 9 N -0.371 5.371 10 C 0.104 3.896 11 C -0.140 4.140 12 C -0.197 4.197 13 N -0.088 5.088 14 C 0.034 3.966 15 H 0.134 0.866 16 C -0.169 4.169 17 C -0.167 4.167 18 C -0.040 4.040 19 N -0.347 5.347 20 C 0.381 3.619 21 O -0.387 6.387 22 C -0.166 4.166 23 C -0.131 4.131 24 C -0.233 4.233 25 C -0.117 4.117 26 N -0.146 5.146 27 H 0.261 0.739 28 C -0.018 4.018 29 N -0.071 5.071 30 N -0.120 5.120 31 H 0.065 0.935 32 H 0.219 0.781 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.203 0.797 36 H 0.097 0.903 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.113 0.887 42 H 0.166 0.834 43 H 0.162 0.838 44 H 0.189 0.811 45 H 0.130 0.870 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.263 -29.713 -14.843 33.629 hybrid contribution 0.947 1.125 -1.116 1.846 sum -4.315 -28.589 -15.959 33.025 Atomic orbital electron populations 1.69691 1.05162 1.25556 1.57467 1.24776 0.95522 0.97739 1.02941 0.86091 0.78734 0.84045 0.77149 1.20484 1.21923 1.21852 1.19264 0.91093 0.83803 1.42925 0.90843 1.42317 1.06016 0.99243 1.89495 1.18944 0.90046 0.81428 0.99217 1.22471 1.02514 1.00620 0.88357 1.23313 0.99079 0.95320 1.01987 1.47206 1.30402 1.24599 1.06612 1.21835 0.95724 0.87614 0.91468 0.86634 1.21969 0.98485 0.94299 1.02167 1.21876 1.01353 0.98248 0.95184 1.22286 0.97460 0.85605 0.98629 1.47863 1.18337 1.18039 1.50416 1.17186 0.79964 0.84688 0.80042 1.90918 1.58115 1.28294 1.61394 1.20238 0.92426 1.00680 1.03263 1.21385 0.94022 0.98967 0.98740 1.20947 0.96978 1.02246 1.03118 1.22119 0.89962 0.99941 0.99634 1.42718 1.09265 1.29982 1.32613 0.73880 1.21875 1.00113 0.91387 0.88423 1.78292 1.19598 1.17032 0.92184 1.75107 1.06639 1.03961 1.26268 0.93526 0.78063 0.94335 0.94552 0.79655 0.90285 0.89777 0.89174 0.90422 0.90375 0.88716 0.83396 0.83761 0.81056 0.86972 0.89593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.31 13.06 55.49 0.72 -28.58 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 6 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 7 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 8 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 9 N -0.73 -19.37 5.59 -61.09 -0.34 -19.71 16 10 C 0.23 4.96 6.82 -5.20 -0.04 4.93 16 11 C 0.00 -0.04 6.61 -82.78 -0.55 -0.58 16 12 C -0.05 -0.71 10.60 -17.05 -0.18 -0.89 16 13 N -0.29 -4.19 3.26 -54.64 -0.18 -4.37 16 14 C 0.14 1.36 3.28 -67.81 -0.22 1.14 16 15 H 0.12 1.21 8.14 -51.93 -0.42 0.78 16 16 C -0.13 -0.86 5.49 -26.69 -0.15 -1.01 16 17 C -0.13 -0.51 6.08 -26.61 -0.16 -0.68 16 18 C 0.08 0.33 5.32 -3.71 -0.02 0.31 16 19 N -0.61 -4.93 2.97 -174.30 -0.52 -5.45 16 20 C 0.59 6.46 7.62 -12.86 -0.10 6.36 16 21 O -0.51 -7.91 16.39 5.19 0.09 -7.83 16 22 C -0.05 -0.47 6.38 -81.98 -0.52 -0.99 16 23 C -0.10 -0.92 10.74 -39.12 -0.42 -1.34 16 24 C -0.21 -1.32 10.81 -39.98 -0.43 -1.75 16 25 C 0.02 0.08 11.89 -16.92 -0.20 -0.12 16 26 N -0.54 -2.68 4.75 -9.39 -0.04 -2.73 16 27 H 0.42 0.93 6.39 -40.82 -0.26 0.67 16 28 C 0.11 1.03 5.48 -3.71 -0.02 1.01 16 29 N -0.09 -1.68 13.17 60.35 0.79 -0.88 16 30 N -0.25 -5.25 12.41 33.29 0.41 -4.84 16 31 H 0.25 7.72 8.31 -40.82 -0.34 7.38 16 32 H 0.39 11.17 7.66 -40.82 -0.31 10.86 16 33 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.19 2.18 7.18 -52.48 -0.38 1.80 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 41 H 0.10 0.27 4.21 -51.93 -0.22 0.05 16 42 H 0.15 1.32 8.06 -52.48 -0.42 0.90 16 43 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 44 H 0.17 0.16 8.06 -52.48 -0.42 -0.26 16 45 H 0.11 1.44 7.00 -51.93 -0.36 1.08 16 46 H 0.09 0.72 6.92 -51.93 -0.36 0.36 16 LS Contribution 379.88 15.07 5.72 5.72 Total: -1.00 -38.66 379.88 -7.71 -46.37 By element: Atomic # 1 Polarization: 11.66 SS G_CDS: -6.09 Total: 5.57 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -3.26 Total: -1.14 kcal Atomic # 7 Polarization: -67.41 SS G_CDS: 0.85 Total: -66.56 kcal Atomic # 8 Polarization: -7.91 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.66 -7.71 -46.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185864707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 196.461 kcal (2) G-P(sol) polarization free energy of solvation -38.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 157.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 150.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds