Wall clock time and date at job start Wed Apr 1 2020 04:16:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86810 * 120.00040 * 2 1 4 4 H 1.48502 * 109.46940 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.46948 * 300.00276 * 3 2 1 6 6 H 1.48498 * 109.46741 * 60.00140 * 3 2 1 7 7 C 1.38816 * 120.00315 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00072 * 179.97438 * 7 2 1 9 9 N 1.36937 * 119.99733 * 359.97438 * 7 2 1 10 10 C 1.46492 * 120.00130 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47472 * 180.02562 * 10 9 7 12 12 C 1.35343 * 126.75239 * 95.00303 * 11 10 9 13 13 N 1.35315 * 106.17825 * 180.02562 * 12 11 10 14 14 C 1.46498 * 125.87173 * 179.73736 * 13 12 11 15 15 H 1.09001 * 109.50148 * 205.06259 * 14 13 12 16 16 C 1.53043 * 109.49847 * 84.99769 * 14 13 12 17 17 C 1.53044 * 109.53681 * 178.68602 * 16 14 13 18 18 C 1.53190 * 109.31519 * 61.36613 * 17 16 14 19 19 N 1.46930 * 108.77197 * 305.36203 * 18 17 16 20 20 C 1.34770 * 120.63128 * 233.62666 * 19 18 17 21 21 O 1.21702 * 120.00140 * 173.21250 * 20 19 18 22 22 C 1.46681 * 120.00043 * 353.21867 * 20 19 18 23 23 C 1.37872 * 126.23503 * 155.97652 * 22 20 19 24 24 C 1.39835 * 107.08501 * 179.84668 * 23 22 20 25 25 C 1.35444 * 107.86360 * 0.41466 * 24 23 22 26 26 N 1.35530 * 108.87512 * 359.74207 * 25 24 23 27 27 H 0.97004 * 125.68322 * 179.97438 * 26 25 24 28 28 C 1.46931 * 118.73864 * 53.61288 * 19 18 17 29 29 N 1.28716 * 108.26386 * 359.97438 * 13 12 11 30 30 N 1.28635 * 110.17551 * 0.02562 * 29 13 12 31 31 H 0.96998 * 120.00174 * 359.97438 * 1 2 3 32 32 H 0.97004 * 119.99618 * 359.97438 * 9 7 2 33 33 H 1.09005 * 109.46881 * 59.99927 * 10 9 7 34 34 H 1.09000 * 109.47653 * 300.00594 * 10 9 7 35 35 H 1.08003 * 126.91717 * 0.02562 * 12 11 10 36 36 H 1.08997 * 109.46037 * 298.70229 * 16 14 13 37 37 H 1.09002 * 109.45698 * 58.67898 * 16 14 13 38 38 H 1.09004 * 109.49588 * 181.31716 * 17 16 14 39 39 H 1.08999 * 109.49593 * 301.40986 * 17 16 14 40 40 H 1.09000 * 109.58738 * 65.14635 * 18 17 16 41 41 H 1.09001 * 109.58613 * 185.43924 * 18 17 16 42 42 H 1.08006 * 126.45536 * 359.96178 * 23 22 20 43 43 H 1.07998 * 126.06574 * 180.13900 * 24 23 22 44 44 H 1.08003 * 125.56237 * 179.77817 * 25 24 23 45 45 H 1.08998 * 109.58603 * 186.59986 * 28 19 18 46 46 H 1.09001 * 109.59042 * 66.17541 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 -0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8914 2.3964 1.2125 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 2.0581 -3.6567 -0.0017 11 6 1.0788 -4.8022 -0.0021 12 6 0.6241 -5.4785 -1.0826 13 7 -0.2309 -6.4144 -0.6092 14 6 -0.9751 -7.3841 -1.4167 15 1 -1.8729 -7.6914 -0.8804 16 6 -0.0959 -8.6079 -1.6842 17 6 -0.8837 -9.6356 -2.5000 18 6 -1.2775 -9.0196 -3.8462 19 7 -1.9995 -7.7641 -3.5986 20 6 -3.2161 -7.5536 -4.1388 21 8 -3.8571 -6.5666 -3.8289 22 6 -3.7679 -8.5142 -5.1003 23 6 -5.1034 -8.7112 -5.3804 24 6 -5.1756 -9.7126 -6.3537 25 6 -3.9117 -10.1078 -6.6379 26 7 -3.0469 -9.3873 -5.8830 27 1 -2.0807 -9.4729 -5.8924 28 6 -1.3700 -6.7426 -2.7507 29 7 -0.2818 -6.3031 0.6721 30 7 0.4879 -5.3505 1.0656 31 1 -0.4850 0.8400 0.0004 32 1 0.3556 -2.3880 0.0002 33 1 2.6854 -3.7148 0.8878 34 1 2.6841 -3.7141 -0.8921 35 1 0.8900 -5.3059 -2.1151 36 1 0.7899 -8.3037 -2.2417 37 1 0.2065 -9.0520 -0.7358 38 1 -0.2649 -10.5166 -2.6701 39 1 -1.7826 -9.9217 -1.9539 40 1 -0.3807 -8.8161 -4.4313 41 1 -1.9200 -9.7117 -4.3907 42 1 -5.9366 -8.1889 -4.9338 43 1 -6.0792 -10.1048 -6.7965 44 1 -3.6376 -10.8719 -7.3503 45 1 -2.0754 -5.9312 -2.5714 46 1 -0.4807 -6.3534 -3.2464 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185864707.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:25 Heat of formation + Delta-G solvation = 121.135377 kcal Electronic energy + Delta-G solvation = -29429.621164 eV Core-core repulsion = 25357.517006 eV Total energy + Delta-G solvation = -4072.104159 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.36198 -42.54175 -40.75199 -38.85949 -36.88489 -35.77964 -33.82842 -33.48796 -32.34181 -31.67321 -31.36239 -30.05963 -27.75232 -26.89856 -25.55429 -24.78727 -23.57754 -22.96869 -22.15800 -21.83273 -21.28230 -20.93648 -19.42249 -19.00604 -18.17616 -17.68805 -17.31146 -16.76548 -16.58233 -16.41042 -16.09541 -15.70460 -15.55690 -15.33439 -15.08911 -14.96180 -14.70420 -14.50767 -14.38741 -14.22245 -13.99763 -13.73282 -13.50013 -13.20621 -13.09409 -12.82719 -12.76159 -12.57717 -12.43258 -12.23926 -12.08128 -12.03516 -11.89022 -11.84680 -11.38321 -11.06237 -10.98225 -10.26632 -10.08066 -9.92691 -9.20301 -9.03390 -7.94016 -5.24999 0.39793 0.55170 1.07008 1.41896 1.49654 1.50941 1.61195 1.74109 1.77555 2.07401 2.35331 2.58737 3.01120 3.27274 3.36857 3.44984 3.56674 3.62783 3.72123 3.81367 3.95367 4.11503 4.19953 4.23795 4.28244 4.35065 4.36283 4.41390 4.44881 4.49316 4.51648 4.64382 4.79876 4.84812 4.90487 5.07593 5.10376 5.12145 5.14932 5.19043 5.26757 5.50551 5.60729 5.71270 5.88196 6.11328 6.25209 6.53415 6.86241 7.31644 7.46634 8.03201 8.28710 9.30247 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.015050 B = 0.002250 C = 0.002049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.072347 B =12440.693767 C =13661.675902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.975 5.975 2 C -0.082 4.082 3 Si 0.980 3.020 4 H -0.258 1.258 5 H -0.292 1.292 6 H -0.298 1.298 7 C -0.240 4.240 8 H 0.088 0.912 9 N -0.741 5.741 10 C 0.235 3.765 11 C -0.034 4.034 12 C -0.020 4.020 13 N -0.278 5.278 14 C 0.133 3.867 15 H 0.103 0.897 16 C -0.122 4.122 17 C -0.120 4.120 18 C 0.078 3.922 19 N -0.603 5.603 20 C 0.586 3.414 21 O -0.577 6.577 22 C -0.078 4.078 23 C -0.129 4.129 24 C -0.229 4.229 25 C 0.050 3.950 26 N -0.527 5.527 27 H 0.435 0.565 28 C 0.109 3.891 29 N -0.113 5.113 30 N -0.297 5.297 31 H 0.250 0.750 32 H 0.369 0.631 33 H 0.031 0.969 34 H 0.066 0.934 35 H 0.226 0.774 36 H 0.097 0.903 37 H 0.077 0.923 38 H 0.126 0.874 39 H 0.067 0.933 40 H 0.112 0.888 41 H 0.110 0.890 42 H 0.129 0.871 43 H 0.159 0.841 44 H 0.219 0.781 45 H 0.072 0.928 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -32.961 -19.429 38.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.626 5.626 2 C -0.274 4.274 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.219 1.219 6 H -0.225 1.225 7 C -0.372 4.372 8 H 0.106 0.894 9 N -0.383 5.383 10 C 0.108 3.892 11 C -0.172 4.172 12 C -0.172 4.172 13 N -0.072 5.072 14 C 0.031 3.969 15 H 0.121 0.879 16 C -0.161 4.161 17 C -0.158 4.158 18 C -0.043 4.043 19 N -0.336 5.336 20 C 0.378 3.622 21 O -0.456 6.456 22 C -0.190 4.190 23 C -0.157 4.157 24 C -0.252 4.252 25 C -0.087 4.087 26 N -0.130 5.130 27 H 0.280 0.720 28 C -0.015 4.015 29 N -0.091 5.091 30 N -0.163 5.163 31 H 0.059 0.941 32 H 0.200 0.800 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.242 0.758 36 H 0.115 0.885 37 H 0.095 0.905 38 H 0.144 0.856 39 H 0.085 0.915 40 H 0.130 0.870 41 H 0.128 0.872 42 H 0.147 0.853 43 H 0.176 0.824 44 H 0.235 0.765 45 H 0.090 0.910 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -2.692 -32.919 -17.920 37.577 hybrid contribution 0.124 1.889 -0.231 1.907 sum -2.568 -31.029 -18.151 36.040 Atomic orbital electron populations 1.69877 1.07035 1.26001 1.59700 1.25701 0.96381 1.01558 1.03715 0.84967 0.78457 0.79215 0.76461 1.18228 1.21944 1.22509 1.19757 0.91870 0.84677 1.40883 0.89448 1.42552 1.05448 1.00828 1.89503 1.18997 0.90292 0.80066 0.99857 1.22322 1.03906 1.01423 0.89573 1.23733 0.97222 0.93625 1.02624 1.47546 1.29333 1.24394 1.05891 1.22225 0.95925 0.88122 0.90668 0.87863 1.21991 0.98598 0.92826 1.02680 1.21893 1.01158 0.98428 0.94332 1.22677 0.98544 0.83782 0.99343 1.47922 1.17659 1.18991 1.49008 1.17600 0.80207 0.84266 0.80170 1.90879 1.60008 1.31016 1.63746 1.19841 0.92691 1.01969 1.04526 1.21521 0.94053 1.00135 0.99961 1.21213 0.98887 1.02100 1.02999 1.22814 0.88853 0.98849 0.98169 1.42662 1.10086 1.28720 1.31535 0.72020 1.21733 0.99880 0.91053 0.88845 1.78192 1.19820 1.17052 0.94046 1.75033 1.08013 1.05310 1.27961 0.94146 0.80014 0.95124 0.91612 0.75766 0.88488 0.90477 0.85610 0.91455 0.86973 0.87240 0.85350 0.82353 0.76488 0.90969 0.87340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.15 13.06 21.65 0.28 -62.86 16 2 C -0.08 -4.89 5.50 84.86 0.47 -4.42 16 3 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 4 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 5 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 6 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 7 C -0.24 -13.79 9.99 84.03 0.84 -12.95 16 8 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 9 N -0.74 -40.07 5.59 -347.20 -1.94 -42.01 16 10 C 0.24 9.99 6.82 85.63 0.58 10.57 16 11 C -0.03 -1.30 6.61 41.59 0.28 -1.03 16 12 C -0.02 -0.59 10.60 83.49 0.89 0.29 16 13 N -0.28 -7.81 3.26 -326.80 -1.06 -8.88 16 14 C 0.13 2.52 3.28 45.07 0.15 2.67 16 15 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 16 C -0.12 -1.26 5.49 30.62 0.17 -1.09 16 17 C -0.12 -0.50 6.08 30.67 0.19 -0.32 16 18 C 0.08 0.32 5.32 86.36 0.46 0.78 16 19 N -0.60 -9.00 2.97 -823.59 -2.45 -11.45 16 20 C 0.59 13.18 7.62 86.45 0.66 13.84 16 21 O -0.58 -19.50 16.39 -4.35 -0.07 -19.57 16 22 C -0.08 -1.30 6.38 40.35 0.26 -1.05 16 23 C -0.13 -2.34 10.74 22.57 0.24 -2.10 16 24 C -0.23 -2.47 10.81 22.01 0.24 -2.23 16 25 C 0.05 0.23 11.89 83.48 0.99 1.22 16 26 N -0.53 -3.41 4.75 -183.62 -0.87 -4.28 16 27 H 0.43 -0.10 6.39 -92.71 -0.59 -0.70 16 28 C 0.11 2.06 5.48 86.36 0.47 2.53 16 29 N -0.11 -4.18 13.17 37.02 0.49 -3.70 16 30 N -0.30 -12.71 12.41 -48.60 -0.60 -13.31 16 31 H 0.25 15.63 8.31 -92.71 -0.77 14.86 16 32 H 0.37 22.10 7.66 -92.71 -0.71 21.39 16 33 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.23 4.53 7.18 -2.91 -0.02 4.51 16 36 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 39 H 0.07 0.47 8.14 -2.39 -0.02 0.46 16 40 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.11 0.16 4.21 -2.39 -0.01 0.15 16 42 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 43 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.22 -0.98 8.06 -2.91 -0.02 -1.01 16 45 H 0.07 1.99 7.00 -2.39 -0.02 1.98 16 46 H 0.11 1.54 6.92 -2.39 -0.02 1.52 16 Total: -1.00 -91.49 379.88 2.40 -89.08 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -0.27 Total: 20.78 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: 6.87 Total: 6.73 kcal Atomic # 7 Polarization: -140.33 SS G_CDS: -6.16 Total: -146.49 kcal Atomic # 8 Polarization: -19.50 SS G_CDS: -0.07 Total: -19.57 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -91.49 2.40 -89.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185864707.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.217 kcal (2) G-P(sol) polarization free energy of solvation -91.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds