Wall clock time and date at job start Wed Apr 1 2020 04:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99901 * 2 1 4 4 H 1.48503 * 109.46569 * 270.00040 * 3 2 1 5 5 H 1.48500 * 109.47019 * 30.00091 * 3 2 1 6 6 H 1.48498 * 109.46887 * 150.00116 * 3 2 1 7 7 C 1.38813 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99784 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99858 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00034 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47394 * 179.97438 * 10 9 7 12 12 C 1.35351 * 126.75082 * 95.24768 * 11 10 9 13 13 N 1.35321 * 106.17280 * 180.12793 * 12 11 10 14 14 C 1.46503 * 125.86141 * 179.90631 * 13 12 11 15 15 H 1.09005 * 109.52258 * 154.79966 * 14 13 12 16 16 C 1.53043 * 109.49485 * 274.87180 * 14 13 12 17 17 C 1.53043 * 109.53672 * 181.32175 * 16 14 13 18 18 C 1.53188 * 109.31303 * 298.63846 * 17 16 14 19 19 N 1.46930 * 108.77779 * 54.63209 * 18 17 16 20 20 C 1.34773 * 120.62896 * 126.41311 * 19 18 17 21 21 O 1.21697 * 120.00132 * 179.82280 * 20 19 18 22 22 C 1.46682 * 120.00056 * 359.83039 * 20 19 18 23 23 C 1.37877 * 126.22927 * 209.61779 * 22 20 19 24 24 C 1.39841 * 107.08385 * 179.97438 * 23 22 20 25 25 C 1.35451 * 107.86243 * 0.02562 * 24 23 22 26 26 N 1.35539 * 108.87579 * 359.72828 * 25 24 23 27 27 H 0.96994 * 125.68111 * 180.30698 * 26 25 24 28 28 C 1.46922 * 118.73887 * 306.39492 * 19 18 17 29 29 N 1.28710 * 108.26550 * 359.63738 * 13 12 11 30 30 N 1.28631 * 110.17696 * 0.23044 * 29 13 12 31 31 H 0.96997 * 120.00108 * 359.97438 * 1 2 3 32 32 H 0.97003 * 120.00091 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47206 * 59.99986 * 10 9 7 34 34 H 1.09004 * 109.47407 * 300.00358 * 10 9 7 35 35 H 1.07997 * 126.91427 * 0.02562 * 12 11 10 36 36 H 1.08993 * 109.46085 * 61.30205 * 16 14 13 37 37 H 1.09000 * 109.46558 * 301.33968 * 16 14 13 38 38 H 1.09003 * 109.49812 * 178.68417 * 17 16 14 39 39 H 1.09001 * 109.49952 * 58.58408 * 17 16 14 40 40 H 1.09007 * 109.58785 * 294.84902 * 18 17 16 41 41 H 1.08997 * 109.70509 * 174.49237 * 18 17 16 42 42 H 1.07997 * 126.45790 * 359.96200 * 23 22 20 43 43 H 1.07992 * 126.06605 * 179.97438 * 24 23 22 44 44 H 1.08003 * 125.56493 * 180.02562 * 25 24 23 45 45 H 1.08992 * 109.58485 * 173.39514 * 28 19 18 46 46 H 1.08997 * 109.58410 * 293.81808 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.5937 -2.1955 -0.0023 12 6 6.4089 -2.1446 1.0770 13 7 7.6456 -1.8677 0.6025 14 6 8.8594 -1.7142 1.4083 15 1 9.7333 -1.9398 0.7971 16 6 8.9530 -0.2755 1.9217 17 6 10.2375 -0.1053 2.7362 18 6 10.2008 -1.0479 3.9431 19 7 9.9655 -2.4177 3.4663 20 6 10.7965 -3.4191 3.8173 21 8 10.5890 -4.5500 3.4185 22 6 11.9508 -3.1459 4.6800 23 6 13.1493 -3.8276 4.6777 24 6 13.9594 -3.2375 5.6530 25 6 13.2571 -2.2286 6.2217 26 7 12.0370 -2.1588 5.6355 27 1 11.3400 -1.5207 5.8541 28 6 8.8070 -2.6750 2.6001 29 7 7.5731 -1.7681 -0.6787 30 7 6.3629 -1.9583 -1.0708 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3621 -0.0014 33 1 3.8485 -3.0426 -0.8908 34 1 3.8491 -3.0423 0.8891 35 1 6.1284 -2.2932 2.1092 36 1 8.0914 -0.0583 2.5529 37 1 8.9657 0.4119 1.0758 38 1 10.3152 0.9256 3.0819 39 1 11.0984 -0.3462 2.1125 40 1 9.3947 -0.7512 4.6142 41 1 11.1522 -1.0038 4.4730 42 1 13.4127 -4.6604 4.0426 43 1 14.9660 -3.5342 5.9080 44 1 13.6130 -1.5818 7.0101 45 1 8.8402 -3.7039 2.2418 46 1 7.8874 -2.5109 3.1617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185864708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:30 Heat of formation + Delta-G solvation = 154.613951 kcal Electronic energy + Delta-G solvation = -29486.151658 eV Core-core repulsion = 25415.499239 eV Total energy + Delta-G solvation = -4070.652419 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.19918 -42.08317 -40.17786 -38.13501 -35.47098 -34.63779 -32.95079 -32.08219 -31.78303 -30.70589 -30.33408 -29.51707 -26.53781 -26.15332 -24.74403 -23.07872 -22.48594 -22.06801 -21.45639 -20.82886 -20.67715 -20.38992 -18.55821 -17.87862 -17.22994 -16.97615 -16.38774 -16.11315 -15.73831 -15.34052 -14.85606 -14.77755 -14.54385 -14.46349 -14.26441 -14.04692 -13.94102 -13.64917 -13.49043 -13.10591 -13.04818 -12.81509 -12.72876 -12.46249 -12.06248 -11.80833 -11.74460 -11.63819 -11.48206 -11.11505 -10.88595 -10.71137 -10.54294 -10.18462 -9.98869 -9.59308 -9.55034 -9.44074 -9.02252 -8.89765 -8.78114 -7.23312 -5.75804 -3.11381 0.96039 1.66616 1.84463 2.15473 2.44750 2.51482 2.75988 2.83579 3.37695 3.43268 3.46259 3.73059 3.84755 3.99315 4.08045 4.15513 4.38128 4.50924 4.54373 4.56094 4.60727 4.74824 4.83104 4.89604 4.90747 4.99581 5.02266 5.12974 5.20257 5.34690 5.37546 5.52781 5.53726 5.55621 5.56702 5.68241 5.73318 5.74240 6.15081 6.25804 6.35382 6.56698 6.60115 6.63988 6.68661 6.77284 7.49633 7.98964 8.42897 8.69846 9.20933 9.93425 10.13685 11.42337 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020400 B = 0.002197 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.240492 B =12739.868240 C =13144.627179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.006 3.994 3 Si 0.885 3.115 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.094 0.906 9 N -0.749 5.749 10 C 0.237 3.763 11 C -0.008 4.008 12 C -0.046 4.046 13 N -0.294 5.294 14 C 0.137 3.863 15 H 0.116 0.884 16 C -0.134 4.134 17 C -0.127 4.127 18 C 0.081 3.919 19 N -0.609 5.609 20 C 0.594 3.406 21 O -0.518 6.518 22 C -0.054 4.054 23 C -0.106 4.106 24 C -0.208 4.208 25 C 0.019 3.981 26 N -0.544 5.544 27 H 0.420 0.580 28 C 0.106 3.894 29 N -0.091 5.091 30 N -0.253 5.253 31 H 0.259 0.741 32 H 0.362 0.638 33 H 0.048 0.952 34 H 0.047 0.953 35 H 0.189 0.811 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.096 0.904 42 H 0.148 0.852 43 H 0.145 0.855 44 H 0.173 0.827 45 H 0.110 0.890 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 31.864 -1.363 16.550 35.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.190 4.190 3 Si 0.715 3.285 4 H -0.210 1.210 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.372 4.372 8 H 0.111 0.889 9 N -0.395 5.395 10 C 0.108 3.892 11 C -0.146 4.146 12 C -0.196 4.196 13 N -0.088 5.088 14 C 0.033 3.967 15 H 0.134 0.866 16 C -0.172 4.172 17 C -0.166 4.166 18 C -0.042 4.042 19 N -0.343 5.343 20 C 0.383 3.617 21 O -0.392 6.392 22 C -0.166 4.166 23 C -0.133 4.133 24 C -0.232 4.232 25 C -0.116 4.116 26 N -0.146 5.146 27 H 0.262 0.738 28 C -0.017 4.017 29 N -0.069 5.069 30 N -0.120 5.120 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.206 0.794 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.114 0.886 42 H 0.165 0.835 43 H 0.163 0.837 44 H 0.190 0.810 45 H 0.129 0.871 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 32.142 -1.731 15.036 35.527 hybrid contribution -0.201 1.570 1.216 1.997 sum 31.941 -0.160 16.252 35.838 Atomic orbital electron populations 1.69698 1.05003 1.25799 1.57567 1.24637 0.95203 0.97112 1.02024 0.86543 0.78940 0.85068 0.77926 1.20964 1.21755 1.20681 1.19049 0.80216 0.94919 1.43024 0.88852 1.42646 1.03907 1.01776 1.91217 1.18924 0.80183 0.89857 1.00196 1.22523 0.98987 1.04667 0.88425 1.23377 0.84470 1.09623 1.02150 1.47244 1.08241 1.46700 1.06610 1.21857 0.85401 0.97356 0.92044 0.86580 1.21992 0.99246 0.94539 1.01445 1.21869 0.97988 1.00248 0.96508 1.22356 1.02952 0.81220 0.97639 1.47884 1.27550 1.08670 1.50239 1.17183 0.80391 0.84294 0.79866 1.90890 1.71935 1.20981 1.55436 1.20202 0.98273 0.97760 1.00392 1.21355 0.91635 1.00127 1.00168 1.20947 1.01292 0.99863 1.01108 1.22139 0.85628 1.02402 1.01440 1.42748 1.14864 1.27031 1.29935 0.73765 1.21848 0.88886 1.00989 0.90024 1.78302 1.16408 1.20082 0.92154 1.75118 0.95848 1.14918 1.26166 0.93046 0.80537 0.93374 0.93564 0.79448 0.90109 0.89668 0.89070 0.90427 0.90154 0.88632 0.83471 0.83731 0.81004 0.87147 0.89542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.45 13.97 55.49 0.78 -28.68 16 2 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 3 Si 0.88 22.66 27.73 -169.99 -4.71 17.94 16 4 H -0.28 -7.33 7.11 56.52 0.40 -6.93 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.80 6.52 56.52 0.37 -6.43 16 7 C -0.24 -6.94 10.47 -15.06 -0.16 -7.09 16 8 H 0.09 2.81 8.06 -52.49 -0.42 2.39 16 9 N -0.75 -18.44 5.40 -61.09 -0.33 -18.77 16 10 C 0.24 4.80 6.82 -5.20 -0.04 4.76 16 11 C -0.01 -0.15 6.62 -82.78 -0.55 -0.70 16 12 C -0.05 -0.65 10.61 -17.04 -0.18 -0.83 16 13 N -0.29 -3.90 3.26 -54.64 -0.18 -4.07 16 14 C 0.14 1.23 3.28 -67.81 -0.22 1.01 16 15 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 16 C -0.13 -0.94 5.49 -26.69 -0.15 -1.08 16 17 C -0.13 -0.53 6.08 -26.61 -0.16 -0.69 16 18 C 0.08 0.30 5.58 -3.71 -0.02 0.28 16 19 N -0.61 -4.30 2.97 -174.32 -0.52 -4.81 16 20 C 0.59 5.68 7.63 -12.85 -0.10 5.58 16 21 O -0.52 -7.00 16.42 5.19 0.09 -6.92 16 22 C -0.05 -0.42 6.36 -81.98 -0.52 -0.94 16 23 C -0.11 -0.83 10.77 -39.11 -0.42 -1.25 16 24 C -0.21 -1.16 10.81 -39.98 -0.43 -1.59 16 25 C 0.02 0.07 11.89 -16.91 -0.20 -0.13 16 26 N -0.54 -2.34 4.74 -9.39 -0.04 -2.38 16 27 H 0.42 0.74 6.48 -40.82 -0.26 0.47 16 28 C 0.11 0.87 5.46 -3.72 -0.02 0.85 16 29 N -0.09 -1.55 13.16 60.35 0.79 -0.75 16 30 N -0.25 -4.96 12.41 33.29 0.41 -4.55 16 31 H 0.26 7.79 8.31 -40.82 -0.34 7.46 16 32 H 0.36 8.97 5.52 -40.82 -0.23 8.74 16 33 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.19 1.99 7.17 -52.49 -0.38 1.62 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 41 H 0.10 0.24 3.87 -51.93 -0.20 0.04 16 42 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 43 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 44 H 0.17 0.09 8.06 -52.48 -0.42 -0.33 16 45 H 0.11 1.13 7.00 -51.93 -0.36 0.76 16 46 H 0.09 0.61 6.91 -51.93 -0.36 0.25 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -38.24 376.80 -7.33 -45.58 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -6.03 Total: 3.46 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -3.26 Total: -1.72 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: 0.91 Total: -64.02 kcal Atomic # 8 Polarization: -7.00 SS G_CDS: 0.09 Total: -6.92 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.71 Total: 17.94 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -38.24 -7.33 -45.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185864708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.190 kcal (2) G-P(sol) polarization free energy of solvation -38.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 161.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds