Wall clock time and date at job start Wed Apr 1 2020 04:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86805 * 119.99901 * 2 1 4 4 H 1.48503 * 109.46569 * 270.00040 * 3 2 1 5 5 H 1.48500 * 109.47019 * 30.00091 * 3 2 1 6 6 H 1.48498 * 109.46887 * 150.00116 * 3 2 1 7 7 C 1.38813 * 119.99931 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99784 * 359.97438 * 7 2 1 9 9 N 1.36934 * 119.99858 * 179.97438 * 7 2 1 10 10 C 1.46494 * 120.00034 * 179.97438 * 9 7 2 11 11 C 1.50693 * 109.47394 * 179.97438 * 10 9 7 12 12 C 1.35351 * 126.75082 * 95.24768 * 11 10 9 13 13 N 1.35321 * 106.17280 * 180.12793 * 12 11 10 14 14 C 1.46503 * 125.86141 * 179.90631 * 13 12 11 15 15 H 1.09005 * 109.52258 * 154.79966 * 14 13 12 16 16 C 1.53043 * 109.49485 * 274.87180 * 14 13 12 17 17 C 1.53043 * 109.53672 * 181.32175 * 16 14 13 18 18 C 1.53188 * 109.31303 * 298.63846 * 17 16 14 19 19 N 1.46930 * 108.77779 * 54.63209 * 18 17 16 20 20 C 1.34773 * 120.62896 * 126.41311 * 19 18 17 21 21 O 1.21697 * 120.00132 * 179.82280 * 20 19 18 22 22 C 1.46682 * 120.00056 * 359.83039 * 20 19 18 23 23 C 1.37877 * 126.22927 * 209.61779 * 22 20 19 24 24 C 1.39841 * 107.08385 * 179.97438 * 23 22 20 25 25 C 1.35451 * 107.86243 * 0.02562 * 24 23 22 26 26 N 1.35539 * 108.87579 * 359.72828 * 25 24 23 27 27 H 0.96994 * 125.68111 * 180.30698 * 26 25 24 28 28 C 1.46922 * 118.73887 * 306.39492 * 19 18 17 29 29 N 1.28710 * 108.26550 * 359.63738 * 13 12 11 30 30 N 1.28631 * 110.17696 * 0.23044 * 29 13 12 31 31 H 0.96997 * 120.00108 * 359.97438 * 1 2 3 32 32 H 0.97003 * 120.00091 * 359.97438 * 9 7 2 33 33 H 1.09004 * 109.47206 * 59.99986 * 10 9 7 34 34 H 1.09004 * 109.47407 * 300.00358 * 10 9 7 35 35 H 1.07997 * 126.91427 * 0.02562 * 12 11 10 36 36 H 1.08993 * 109.46085 * 61.30205 * 16 14 13 37 37 H 1.09000 * 109.46558 * 301.33968 * 16 14 13 38 38 H 1.09003 * 109.49812 * 178.68417 * 17 16 14 39 39 H 1.09001 * 109.49952 * 58.58408 * 17 16 14 40 40 H 1.09007 * 109.58785 * 294.84902 * 18 17 16 41 41 H 1.08997 * 109.70509 * 174.49237 * 18 17 16 42 42 H 1.07997 * 126.45790 * 359.96200 * 23 22 20 43 43 H 1.07992 * 126.06605 * 179.97438 * 24 23 22 44 44 H 1.08003 * 125.56493 * 180.02562 * 25 24 23 45 45 H 1.08992 * 109.58485 * 173.39514 * 28 19 18 46 46 H 1.08997 * 109.58410 * 293.81808 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7001 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1121 -2.4708 -0.0011 11 6 5.5937 -2.1955 -0.0023 12 6 6.4089 -2.1446 1.0770 13 7 7.6456 -1.8677 0.6025 14 6 8.8594 -1.7142 1.4083 15 1 9.7333 -1.9398 0.7971 16 6 8.9530 -0.2755 1.9217 17 6 10.2375 -0.1053 2.7362 18 6 10.2008 -1.0479 3.9431 19 7 9.9655 -2.4177 3.4663 20 6 10.7965 -3.4191 3.8173 21 8 10.5890 -4.5500 3.4185 22 6 11.9508 -3.1459 4.6800 23 6 13.1493 -3.8276 4.6777 24 6 13.9594 -3.2375 5.6530 25 6 13.2571 -2.2286 6.2217 26 7 12.0370 -2.1588 5.6355 27 1 11.3400 -1.5207 5.8541 28 6 8.8070 -2.6750 2.6001 29 7 7.5731 -1.7681 -0.6787 30 7 6.3629 -1.9583 -1.0708 31 1 -0.4850 0.8400 0.0004 32 1 3.8646 -0.3621 -0.0014 33 1 3.8485 -3.0426 -0.8908 34 1 3.8491 -3.0423 0.8891 35 1 6.1284 -2.2932 2.1092 36 1 8.0914 -0.0583 2.5529 37 1 8.9657 0.4119 1.0758 38 1 10.3152 0.9256 3.0819 39 1 11.0984 -0.3462 2.1125 40 1 9.3947 -0.7512 4.6142 41 1 11.1522 -1.0038 4.4730 42 1 13.4127 -4.6604 4.0426 43 1 14.9660 -3.5342 5.9080 44 1 13.6130 -1.5818 7.0101 45 1 8.8402 -3.7039 2.2418 46 1 7.8874 -2.5109 3.1617 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001185864708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:16:29 Heat of formation + Delta-G solvation = 126.361555 kcal Electronic energy + Delta-G solvation = -29487.376774 eV Core-core repulsion = 25415.499239 eV Total energy + Delta-G solvation = -4071.877535 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.41107 -42.55129 -40.75942 -38.86939 -37.05833 -35.81299 -33.93546 -33.52870 -32.39268 -32.02512 -31.38029 -30.07337 -28.01779 -26.91395 -25.56906 -24.39842 -23.59253 -22.99999 -22.23709 -21.86327 -21.29174 -20.93388 -19.95053 -19.06391 -18.15799 -17.71450 -17.40793 -16.71103 -16.57280 -16.44328 -16.17662 -15.79941 -15.71839 -15.30475 -15.02899 -14.92703 -14.71148 -14.55222 -14.47878 -14.23293 -14.04022 -13.89109 -13.52218 -13.46342 -13.20437 -12.92665 -12.79709 -12.62251 -12.43225 -12.27748 -12.12963 -12.09105 -11.92544 -11.81887 -11.38336 -11.10722 -11.02641 -10.32313 -10.09247 -9.92611 -9.33157 -9.20007 -8.02664 -5.36571 0.42547 0.51768 1.02327 1.32970 1.38193 1.40317 1.46377 1.71267 1.76191 2.04863 2.35956 2.47266 2.99991 3.24805 3.27414 3.38014 3.53942 3.61036 3.69411 3.76491 3.82156 3.94045 4.09119 4.21132 4.25538 4.33654 4.35188 4.39785 4.43217 4.48233 4.51985 4.60777 4.76526 4.81880 4.87647 5.05533 5.07860 5.09080 5.11970 5.15855 5.26323 5.56817 5.71908 5.74768 5.88896 6.09115 6.20518 6.51411 6.84656 7.04785 7.42241 7.79228 7.99712 9.18395 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.020400 B = 0.002197 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.240492 B =12739.868240 C =13144.627179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.980 5.980 2 C -0.060 4.060 3 Si 0.953 3.047 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.232 4.232 8 H 0.066 0.934 9 N -0.751 5.751 10 C 0.239 3.761 11 C -0.038 4.038 12 C -0.018 4.018 13 N -0.278 5.278 14 C 0.134 3.866 15 H 0.111 0.889 16 C -0.129 4.129 17 C -0.119 4.119 18 C 0.078 3.922 19 N -0.601 5.601 20 C 0.590 3.410 21 O -0.572 6.572 22 C -0.077 4.077 23 C -0.129 4.129 24 C -0.228 4.228 25 C 0.045 3.955 26 N -0.529 5.529 27 H 0.434 0.566 28 C 0.110 3.890 29 N -0.109 5.109 30 N -0.295 5.295 31 H 0.259 0.741 32 H 0.363 0.637 33 H 0.034 0.966 34 H 0.069 0.931 35 H 0.228 0.772 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.132 0.868 43 H 0.158 0.842 44 H 0.215 0.785 45 H 0.085 0.915 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.564 1.105 19.803 39.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.630 5.630 2 C -0.251 4.251 3 Si 0.781 3.219 4 H -0.215 1.215 5 H -0.215 1.215 6 H -0.181 1.181 7 C -0.362 4.362 8 H 0.084 0.916 9 N -0.397 5.397 10 C 0.111 3.889 11 C -0.176 4.176 12 C -0.170 4.170 13 N -0.072 5.072 14 C 0.032 3.968 15 H 0.129 0.871 16 C -0.168 4.168 17 C -0.158 4.158 18 C -0.044 4.044 19 N -0.334 5.334 20 C 0.381 3.619 21 O -0.451 6.451 22 C -0.189 4.189 23 C -0.157 4.157 24 C -0.251 4.251 25 C -0.091 4.091 26 N -0.132 5.132 27 H 0.279 0.721 28 C -0.014 4.014 29 N -0.088 5.088 30 N -0.161 5.161 31 H 0.068 0.932 32 H 0.196 0.804 33 H 0.052 0.948 34 H 0.086 0.914 35 H 0.245 0.755 36 H 0.108 0.892 37 H 0.090 0.910 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.150 0.850 43 H 0.176 0.824 44 H 0.232 0.768 45 H 0.104 0.896 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 34.900 0.764 18.297 39.413 hybrid contribution -0.916 0.703 0.256 1.183 sum 33.984 1.468 18.552 38.746 Atomic orbital electron populations 1.69864 1.06867 1.26663 1.59610 1.25421 0.96071 1.00943 1.02704 0.85443 0.78563 0.80223 0.77705 1.21476 1.21508 1.18056 1.19046 0.82057 0.93902 1.41238 0.91577 1.42644 1.02544 1.03470 1.91050 1.18916 0.81584 0.88014 1.00346 1.22254 0.98178 1.07517 0.89672 1.23801 0.83778 1.06593 1.02823 1.47569 1.09290 1.44441 1.05908 1.22214 0.83435 0.99431 0.91762 0.87142 1.22012 1.01260 0.92033 1.01454 1.21867 0.95976 1.01880 0.96033 1.22666 1.04876 0.78875 0.97944 1.47927 1.26515 1.09706 1.49245 1.17506 0.80787 0.83939 0.79688 1.90855 1.73354 1.23227 1.57702 1.19891 0.97568 0.99583 1.01885 1.21504 0.92783 1.00331 1.01063 1.21210 1.02133 1.00706 1.01051 1.22788 0.84499 1.01265 1.00571 1.42707 1.15534 1.26210 1.28787 0.72072 1.21748 0.90246 0.99344 0.90071 1.78218 1.15534 1.21089 0.93923 1.75055 0.96914 1.16440 1.27714 0.93238 0.80445 0.94840 0.91368 0.75534 0.89230 0.90961 0.86284 0.91013 0.87414 0.87146 0.85025 0.82423 0.76833 0.89635 0.87540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -62.96 13.97 21.65 0.30 -62.65 16 2 C -0.06 -3.56 5.50 84.86 0.47 -3.09 16 3 Si 0.95 46.53 27.73 68.60 1.90 48.43 16 4 H -0.29 -14.21 7.11 99.48 0.71 -13.51 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 6 H -0.26 -11.31 6.52 99.48 0.65 -10.66 16 7 C -0.23 -13.37 10.47 84.03 0.88 -12.49 16 8 H 0.07 4.10 8.06 -2.91 -0.02 4.07 16 9 N -0.75 -36.45 5.40 -347.20 -1.87 -38.32 16 10 C 0.24 9.56 6.82 85.63 0.58 10.15 16 11 C -0.04 -1.33 6.62 41.59 0.28 -1.05 16 12 C -0.02 -0.47 10.61 83.49 0.89 0.41 16 13 N -0.28 -6.94 3.26 -326.79 -1.06 -8.00 16 14 C 0.13 2.17 3.28 45.07 0.15 2.31 16 15 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 16 C -0.13 -1.40 5.49 30.62 0.17 -1.23 16 17 C -0.12 -0.52 6.08 30.67 0.19 -0.33 16 18 C 0.08 0.26 5.58 86.36 0.48 0.75 16 19 N -0.60 -7.25 2.97 -823.64 -2.45 -9.69 16 20 C 0.59 11.03 7.63 86.45 0.66 11.69 16 21 O -0.57 -16.23 16.42 -4.34 -0.07 -16.30 16 22 C -0.08 -1.09 6.36 40.35 0.26 -0.83 16 23 C -0.13 -2.00 10.77 22.57 0.24 -1.75 16 24 C -0.23 -2.07 10.81 22.01 0.24 -1.83 16 25 C 0.05 0.16 11.89 83.48 0.99 1.15 16 26 N -0.53 -2.71 4.74 -183.61 -0.87 -3.58 16 27 H 0.43 -0.46 6.48 -92.71 -0.60 -1.06 16 28 C 0.11 1.61 5.46 86.36 0.47 2.08 16 29 N -0.11 -3.67 13.16 37.02 0.49 -3.18 16 30 N -0.29 -11.53 12.41 -48.60 -0.60 -12.14 16 31 H 0.26 15.80 8.31 -92.71 -0.77 15.03 16 32 H 0.36 17.37 5.52 -92.71 -0.51 16.86 16 33 H 0.03 1.43 8.14 -2.38 -0.02 1.42 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.23 3.85 7.17 -2.91 -0.02 3.83 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 39 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.11 -0.11 8.14 -2.38 -0.02 -0.13 16 41 H 0.11 0.07 3.87 -2.39 -0.01 0.06 16 42 H 0.13 2.27 8.06 -2.91 -0.02 2.25 16 43 H 0.16 0.89 8.06 -2.91 -0.02 0.87 16 44 H 0.22 -1.06 8.06 -2.91 -0.02 -1.08 16 45 H 0.09 1.74 7.00 -2.39 -0.02 1.72 16 46 H 0.11 1.14 6.91 -2.39 -0.02 1.12 16 Total: -1.00 -87.87 376.80 2.56 -85.31 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -0.13 Total: 14.20 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 6.94 Total: 5.93 kcal Atomic # 7 Polarization: -131.50 SS G_CDS: -6.07 Total: -137.57 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: -0.07 Total: -16.30 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 1.90 Total: 48.43 kcal Total: -87.87 2.56 -85.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185864708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 211.671 kcal (2) G-P(sol) polarization free energy of solvation -87.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds