Wall clock time and date at job start Wed Apr 1 2020 04:21:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00292 * 2 1 4 4 H 1.48494 * 109.46865 * 269.99925 * 3 2 1 5 5 H 1.48495 * 109.47082 * 29.99771 * 3 2 1 6 6 H 1.48502 * 109.46991 * 150.00042 * 3 2 1 7 7 C 1.38820 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99534 * 359.97438 * 7 2 1 9 9 N 1.36933 * 119.99964 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00067 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47268 * 179.97438 * 10 9 7 12 12 C 1.53042 * 109.46180 * 174.99731 * 11 10 9 13 13 C 1.53186 * 109.31424 * 181.38820 * 12 11 10 14 14 N 1.46931 * 108.77547 * 305.36982 * 13 12 11 15 15 C 1.34784 * 120.62757 * 233.58511 * 14 13 12 16 16 O 1.21274 * 119.99897 * 359.72693 * 15 14 13 17 17 C 1.50695 * 119.99635 * 179.97438 * 15 14 13 18 18 C 1.50707 * 109.47011 * 180.02562 * 17 15 14 19 19 N 1.32614 * 125.18071 * 269.69737 * 18 17 15 20 20 C 1.32831 * 109.75452 * 179.85686 * 19 18 17 21 21 N 1.33816 * 132.50122 * 180.09293 * 20 19 18 22 22 C 1.31356 * 120.86252 * 180.33825 * 21 20 19 23 23 C 1.40046 * 120.30941 * 0.02562 * 22 21 20 24 24 C 1.35771 * 119.24232 * 359.96413 * 23 22 21 25 25 N 1.35975 * 119.02422 * 0.04104 * 24 23 22 26 26 N 1.31174 * 125.18714 * 89.99584 * 18 17 15 27 27 C 1.46918 * 118.74146 * 53.86010 * 14 13 12 28 28 C 1.53042 * 109.46290 * 295.07246 * 11 10 9 29 29 H 0.97004 * 119.99599 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00281 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47181 * 59.99825 * 10 9 7 32 32 H 1.08997 * 109.46609 * 299.99811 * 10 9 7 33 33 H 1.09005 * 109.46050 * 55.02700 * 11 10 9 34 34 H 1.08998 * 109.49049 * 61.43544 * 12 11 10 35 35 H 1.08996 * 109.52462 * 301.35668 * 12 11 10 36 36 H 1.08994 * 109.58817 * 185.58198 * 13 12 11 37 37 H 1.09001 * 109.70649 * 65.22344 * 13 12 11 38 38 H 1.09005 * 109.47403 * 300.00056 * 17 15 14 39 39 H 1.09002 * 109.47422 * 60.00295 * 17 15 14 40 40 H 1.07992 * 119.84393 * 180.02562 * 22 21 20 41 41 H 1.08006 * 120.37657 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.49189 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.59003 * 65.92626 * 27 14 13 44 44 H 1.08997 * 109.58851 * 186.35824 * 27 14 13 45 45 H 1.09001 * 109.49569 * 298.56072 * 28 11 10 46 46 H 1.08998 * 109.50167 * 58.62357 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0014 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4711 0.0011 11 6 5.6162 -2.1916 0.0011 12 6 6.3801 -3.5117 0.1269 13 6 7.8846 -3.2253 0.1615 14 7 8.2422 -2.4315 -1.0222 15 6 9.2270 -2.8364 -1.8485 16 8 9.8307 -3.8620 -1.6156 17 6 9.5816 -2.0115 -3.0588 18 6 10.7052 -2.6786 -3.8097 19 7 11.9970 -2.4590 -3.6054 20 6 12.7163 -3.2100 -4.4320 21 7 14.0351 -3.3483 -4.6115 22 6 14.5089 -4.1709 -5.5194 23 6 13.6363 -4.9198 -6.3188 24 6 12.2966 -4.7861 -6.1437 25 7 11.8378 -3.9262 -5.1955 26 7 10.5544 -3.5608 -4.7687 27 6 7.5100 -1.1851 -1.2845 28 6 6.0059 -1.4973 -1.3059 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3623 0.0007 31 1 3.8490 -3.0425 -0.8891 32 1 3.8483 -3.0427 0.8908 33 1 5.8657 -1.5461 0.8433 34 1 6.1504 -4.1478 -0.7279 35 1 6.0849 -4.0173 1.0463 36 1 8.4359 -4.1654 0.1511 37 1 8.1317 -2.6666 1.0642 38 1 8.7107 -1.9269 -3.7088 39 1 9.8962 -1.0173 -2.7415 40 1 15.5763 -4.2700 -5.6501 41 1 14.0247 -5.5961 -7.0660 42 1 11.6054 -5.3541 -6.7487 43 1 7.7247 -0.4625 -0.4973 44 1 7.8139 -0.7788 -2.2492 45 1 5.7798 -2.1523 -2.1473 46 1 5.4437 -0.5689 -1.4064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206927760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:31 Heat of formation + Delta-G solvation = 120.120400 kcal Electronic energy + Delta-G solvation = -29011.457834 eV Core-core repulsion = 24939.309663 eV Total energy + Delta-G solvation = -4072.148171 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.32396 -40.42667 -39.24258 -37.81692 -35.13550 -35.02848 -33.25496 -32.65562 -31.37566 -31.11173 -30.69373 -29.67364 -26.96013 -25.21359 -24.37265 -23.66717 -23.38112 -22.10947 -21.26712 -20.35411 -19.15284 -18.84211 -18.51596 -17.81918 -17.37307 -16.82572 -16.70014 -15.97346 -15.66195 -15.06974 -14.73098 -14.48511 -14.23538 -14.13060 -13.96613 -13.87402 -13.61048 -13.30304 -13.13488 -13.07548 -12.92783 -12.57741 -12.42788 -12.40598 -12.30330 -11.93693 -11.40598 -11.25193 -10.92940 -10.58371 -10.56289 -10.48392 -10.47258 -10.26255 -10.24155 -10.10694 -9.81991 -9.59065 -9.25053 -8.90596 -8.75371 -7.23430 -5.77491 -3.12814 -0.07787 0.24469 1.42835 2.01901 2.41859 2.69340 2.89382 3.02696 3.34975 3.36466 3.43580 3.44377 3.76081 3.99662 4.26793 4.29908 4.48435 4.57524 4.70184 4.75822 4.85784 4.90688 4.94646 4.96107 5.06449 5.24257 5.29714 5.33745 5.45605 5.55096 5.65956 5.69382 5.70669 5.76635 5.79907 5.82938 5.88470 6.05514 6.10946 6.26374 6.33372 6.45716 6.68534 6.79377 6.94785 7.20073 7.51161 7.95477 7.99238 8.41569 9.20845 9.92998 10.13050 11.41066 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.001909 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.723351 B =14662.425443 C =14965.848278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.162 3.838 11 C -0.098 4.098 12 C -0.125 4.125 13 C 0.114 3.886 14 N -0.606 5.606 15 C 0.527 3.473 16 O -0.537 6.537 17 C -0.054 4.054 18 C 0.301 3.699 19 N -0.512 5.512 20 C 0.442 3.558 21 N -0.454 5.454 22 C 0.205 3.795 23 C -0.226 4.226 24 C 0.175 3.825 25 N -0.326 5.326 26 N -0.319 5.319 27 C 0.101 3.899 28 C -0.128 4.128 29 H 0.259 0.741 30 H 0.360 0.640 31 H 0.027 0.973 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.068 0.932 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.069 0.931 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.191 0.809 41 H 0.175 0.825 42 H 0.183 0.817 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.461 -8.841 -13.516 34.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.715 3.285 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.035 3.965 11 C -0.117 4.117 12 C -0.164 4.164 13 C -0.008 4.008 14 N -0.339 5.339 15 C 0.313 3.687 16 O -0.413 6.413 17 C -0.096 4.096 18 C 0.019 3.981 19 N -0.243 5.243 20 C 0.082 3.918 21 N -0.168 5.168 22 C 0.019 3.981 23 C -0.252 4.252 24 C 0.037 3.963 25 N -0.105 5.105 26 N -0.150 5.150 27 C -0.021 4.021 28 C -0.166 4.166 29 H 0.069 0.931 30 H 0.193 0.807 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.208 0.792 41 H 0.193 0.807 42 H 0.201 0.799 43 H 0.093 0.907 44 H 0.102 0.898 45 H 0.089 0.911 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 30.255 -8.788 -12.644 33.948 hybrid contribution 0.094 0.659 -0.657 0.936 sum 30.349 -8.129 -13.301 34.118 Atomic orbital electron populations 1.69705 1.05115 1.25778 1.57671 1.24687 0.95248 0.97202 1.02156 0.86547 0.79234 0.85015 0.77740 1.21052 1.21758 1.20330 1.19071 0.80724 0.94709 1.42824 0.89301 1.42720 1.03985 1.02218 1.91174 1.20649 0.87971 0.89232 0.98643 1.21367 0.96569 0.96232 0.97567 1.21899 0.93550 0.97895 1.03032 1.21645 0.95976 0.96623 0.86546 1.48069 1.34987 1.24660 1.26208 1.19963 0.79699 0.85570 0.83484 1.90725 1.51637 1.25161 1.73819 1.20112 0.94695 0.99801 0.95025 1.23508 0.91657 0.91512 0.91391 1.70680 1.02018 1.26732 1.24915 1.22718 0.88271 0.90778 0.90063 1.68016 1.07511 1.20745 1.20546 1.23605 1.01881 0.86395 0.86246 1.21968 0.91407 1.06071 1.05704 1.22199 0.96453 0.89301 0.88367 1.48775 1.08189 1.28515 1.25008 1.78561 0.94209 1.21860 1.20406 1.22040 0.92755 0.85295 1.02033 1.22038 0.93575 1.02318 0.98689 0.93086 0.80706 0.95529 0.95502 0.90929 0.91357 0.90374 0.89168 0.91296 0.85537 0.85235 0.79217 0.80729 0.79948 0.90666 0.89771 0.91142 0.89908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.27 13.97 55.49 0.78 -28.49 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 21.66 27.74 -169.99 -4.71 16.95 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 6 H -0.28 -6.31 6.52 56.52 0.37 -5.94 16 7 C -0.24 -6.83 10.47 -15.06 -0.16 -6.99 16 8 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 9 N -0.76 -17.37 5.12 -59.91 -0.31 -17.67 16 10 C 0.16 3.00 5.65 -4.04 -0.02 2.98 16 11 C -0.10 -1.38 2.19 -90.58 -0.20 -1.57 16 12 C -0.13 -1.51 5.36 -26.61 -0.14 -1.65 16 13 C 0.11 1.33 6.43 -3.71 -0.02 1.31 16 14 N -0.61 -7.04 2.97 -172.51 -0.51 -7.56 16 15 C 0.53 6.96 7.69 -10.98 -0.08 6.87 16 16 O -0.54 -9.23 15.45 5.56 0.09 -9.15 16 17 C -0.05 -0.57 4.67 -29.03 -0.14 -0.71 16 18 C 0.30 4.11 6.59 -157.01 -1.03 3.07 16 19 N -0.51 -7.69 11.25 -11.80 -0.13 -7.82 16 20 C 0.44 5.78 8.99 -323.13 -2.91 2.87 16 21 N -0.45 -4.69 10.48 -13.82 -0.14 -4.83 16 22 C 0.21 0.93 11.27 -17.08 -0.19 0.74 16 23 C -0.23 -0.61 10.06 -39.79 -0.40 -1.01 16 24 C 0.17 1.01 11.32 -16.60 -0.19 0.82 16 25 N -0.33 -3.67 3.91 -13.84 -0.05 -3.73 16 26 N -0.32 -4.30 12.78 32.39 0.41 -3.89 16 27 C 0.10 1.00 6.37 -3.49 -0.02 0.98 16 28 C -0.13 -1.61 5.26 -26.38 -0.14 -1.75 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.36 7.95 4.70 -40.82 -0.19 7.76 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.09 1.15 7.01 -51.93 -0.36 0.78 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.13 1.03 7.70 -51.93 -0.40 0.63 16 39 H 0.13 1.05 7.93 -51.93 -0.41 0.64 16 40 H 0.19 -0.01 8.06 -52.49 -0.42 -0.43 16 41 H 0.18 -0.31 8.06 -52.48 -0.42 -0.73 16 42 H 0.18 0.45 8.06 -52.48 -0.42 0.03 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.08 0.62 5.93 -51.93 -0.31 0.32 16 45 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 46 H 0.08 1.15 7.15 -51.93 -0.37 0.78 16 LS Contribution 378.32 15.07 5.70 5.70 Total: -1.00 -40.72 378.32 -10.92 -51.64 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.29 Total: 2.90 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -5.74 Total: 5.95 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: 0.04 Total: -73.99 kcal Atomic # 8 Polarization: -9.23 SS G_CDS: 0.09 Total: -9.15 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.71 Total: 16.95 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -40.72 -10.92 -51.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206927760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.762 kcal (2) G-P(sol) polarization free energy of solvation -40.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds