Wall clock time and date at job start Wed Apr 1 2020 04:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86803 * 120.00292 * 2 1 4 4 H 1.48494 * 109.46865 * 269.99925 * 3 2 1 5 5 H 1.48495 * 109.47082 * 29.99771 * 3 2 1 6 6 H 1.48502 * 109.46991 * 150.00042 * 3 2 1 7 7 C 1.38820 * 119.99708 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99534 * 359.97438 * 7 2 1 9 9 N 1.36933 * 119.99964 * 180.02562 * 7 2 1 10 10 C 1.46501 * 120.00067 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47268 * 179.97438 * 10 9 7 12 12 C 1.53042 * 109.46180 * 174.99731 * 11 10 9 13 13 C 1.53186 * 109.31424 * 181.38820 * 12 11 10 14 14 N 1.46931 * 108.77547 * 305.36982 * 13 12 11 15 15 C 1.34784 * 120.62757 * 233.58511 * 14 13 12 16 16 O 1.21274 * 119.99897 * 359.72693 * 15 14 13 17 17 C 1.50695 * 119.99635 * 179.97438 * 15 14 13 18 18 C 1.50707 * 109.47011 * 180.02562 * 17 15 14 19 19 N 1.32614 * 125.18071 * 269.69737 * 18 17 15 20 20 C 1.32831 * 109.75452 * 179.85686 * 19 18 17 21 21 N 1.33816 * 132.50122 * 180.09293 * 20 19 18 22 22 C 1.31356 * 120.86252 * 180.33825 * 21 20 19 23 23 C 1.40046 * 120.30941 * 0.02562 * 22 21 20 24 24 C 1.35771 * 119.24232 * 359.96413 * 23 22 21 25 25 N 1.35975 * 119.02422 * 0.04104 * 24 23 22 26 26 N 1.31174 * 125.18714 * 89.99584 * 18 17 15 27 27 C 1.46918 * 118.74146 * 53.86010 * 14 13 12 28 28 C 1.53042 * 109.46290 * 295.07246 * 11 10 9 29 29 H 0.97004 * 119.99599 * 0.02562 * 1 2 3 30 30 H 0.97002 * 120.00281 * 359.97438 * 9 7 2 31 31 H 1.09002 * 109.47181 * 59.99825 * 10 9 7 32 32 H 1.08997 * 109.46609 * 299.99811 * 10 9 7 33 33 H 1.09005 * 109.46050 * 55.02700 * 11 10 9 34 34 H 1.08998 * 109.49049 * 61.43544 * 12 11 10 35 35 H 1.08996 * 109.52462 * 301.35668 * 12 11 10 36 36 H 1.08994 * 109.58817 * 185.58198 * 13 12 11 37 37 H 1.09001 * 109.70649 * 65.22344 * 13 12 11 38 38 H 1.09005 * 109.47403 * 300.00056 * 17 15 14 39 39 H 1.09002 * 109.47422 * 60.00295 * 17 15 14 40 40 H 1.07992 * 119.84393 * 180.02562 * 22 21 20 41 41 H 1.08006 * 120.37657 * 179.97438 * 23 22 21 42 42 H 1.08005 * 120.49189 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.59003 * 65.92626 * 27 14 13 44 44 H 1.08997 * 109.58851 * 186.35824 * 27 14 13 45 45 H 1.09001 * 109.49569 * 298.56072 * 28 11 10 46 46 H 1.08998 * 109.50167 * 58.62357 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6527 0.7000 6 1 3.5478 1.4400 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0014 9 7 3.3796 -1.2023 0.0011 10 6 4.1120 -2.4711 0.0011 11 6 5.6162 -2.1916 0.0011 12 6 6.3801 -3.5117 0.1269 13 6 7.8846 -3.2253 0.1615 14 7 8.2422 -2.4315 -1.0222 15 6 9.2270 -2.8364 -1.8485 16 8 9.8307 -3.8620 -1.6156 17 6 9.5816 -2.0115 -3.0588 18 6 10.7052 -2.6786 -3.8097 19 7 11.9970 -2.4590 -3.6054 20 6 12.7163 -3.2100 -4.4320 21 7 14.0351 -3.3483 -4.6115 22 6 14.5089 -4.1709 -5.5194 23 6 13.6363 -4.9198 -6.3188 24 6 12.2966 -4.7861 -6.1437 25 7 11.8378 -3.9262 -5.1955 26 7 10.5544 -3.5608 -4.7687 27 6 7.5100 -1.1851 -1.2845 28 6 6.0059 -1.4973 -1.3059 29 1 -0.4850 0.8401 -0.0004 30 1 3.8646 -0.3623 0.0007 31 1 3.8490 -3.0425 -0.8891 32 1 3.8483 -3.0427 0.8908 33 1 5.8657 -1.5461 0.8433 34 1 6.1504 -4.1478 -0.7279 35 1 6.0849 -4.0173 1.0463 36 1 8.4359 -4.1654 0.1511 37 1 8.1317 -2.6666 1.0642 38 1 8.7107 -1.9269 -3.7088 39 1 9.8962 -1.0173 -2.7415 40 1 15.5763 -4.2700 -5.6501 41 1 14.0247 -5.5961 -7.0660 42 1 11.6054 -5.3541 -6.7487 43 1 7.7247 -0.4625 -0.4973 44 1 7.8139 -0.7788 -2.2492 45 1 5.7798 -2.1523 -2.1473 46 1 5.4437 -0.5689 -1.4064 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206927760.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:21:30 Heat of formation + Delta-G solvation = 91.989935 kcal Electronic energy + Delta-G solvation = -29012.677663 eV Core-core repulsion = 24939.309663 eV Total energy + Delta-G solvation = -4073.368000 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.01674 -41.37752 -39.88261 -38.93707 -36.69012 -35.66073 -34.60199 -33.68164 -32.71903 -32.01632 -31.82627 -30.46486 -28.36208 -25.82010 -25.35686 -24.80635 -24.33883 -23.40295 -22.43322 -21.46307 -20.13405 -19.61167 -19.47793 -19.13246 -18.45657 -17.57675 -17.21964 -16.80498 -16.67310 -16.48458 -15.93292 -15.59571 -15.47124 -15.19451 -14.91944 -14.78618 -14.61619 -14.31196 -14.17685 -14.02092 -13.77668 -13.77155 -13.64988 -13.31904 -13.17647 -13.10585 -13.01215 -12.76903 -12.19001 -12.16508 -11.86759 -11.68023 -11.54176 -11.39680 -11.39231 -11.08121 -11.03692 -10.93874 -10.64165 -9.93240 -9.72262 -9.27223 -8.00844 -5.34532 -0.51996 -0.35199 0.84302 1.27080 1.39735 1.44917 1.46394 1.52333 1.94101 2.24609 2.37950 2.51156 2.77775 3.30432 3.32740 3.44553 3.50079 3.57297 3.81156 3.86219 3.93651 4.07277 4.11402 4.16596 4.22281 4.35150 4.39117 4.43691 4.51741 4.56905 4.73160 4.79779 4.83608 4.84446 4.92505 4.98756 5.04733 5.07795 5.09234 5.15463 5.26429 5.35587 5.50712 5.54651 5.77288 6.22779 6.28115 6.36434 6.76586 7.00530 7.10416 7.85916 8.07324 9.20858 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.024200 B = 0.001909 C = 0.001870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.723351 B =14662.425443 C =14965.848278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.986 5.986 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.299 1.299 6 H -0.245 1.245 7 C -0.237 4.237 8 H 0.050 0.950 9 N -0.753 5.753 10 C 0.159 3.841 11 C -0.088 4.088 12 C -0.115 4.115 13 C 0.116 3.884 14 N -0.602 5.602 15 C 0.525 3.475 16 O -0.585 6.585 17 C -0.050 4.050 18 C 0.285 3.715 19 N -0.560 5.560 20 C 0.420 3.580 21 N -0.497 5.497 22 C 0.213 3.787 23 C -0.189 4.189 24 C 0.143 3.857 25 N -0.334 5.334 26 N -0.350 5.350 27 C 0.104 3.896 28 C -0.127 4.127 29 H 0.257 0.743 30 H 0.369 0.631 31 H 0.018 0.982 32 H 0.020 0.980 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.240 0.760 41 H 0.233 0.767 42 H 0.212 0.788 43 H 0.093 0.907 44 H 0.114 0.886 45 H 0.063 0.937 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.079 -8.410 -15.165 38.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.637 5.637 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.226 1.226 6 H -0.169 1.169 7 C -0.368 4.368 8 H 0.068 0.932 9 N -0.400 5.400 10 C 0.033 3.967 11 C -0.107 4.107 12 C -0.154 4.154 13 C -0.006 4.006 14 N -0.334 5.334 15 C 0.313 3.687 16 O -0.465 6.465 17 C -0.092 4.092 18 C 0.004 3.996 19 N -0.294 5.294 20 C 0.060 3.940 21 N -0.214 5.214 22 C 0.030 3.970 23 C -0.213 4.213 24 C 0.007 3.993 25 N -0.113 5.113 26 N -0.183 5.183 27 C -0.017 4.017 28 C -0.165 4.165 29 H 0.066 0.934 30 H 0.203 0.797 31 H 0.036 0.964 32 H 0.038 0.962 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.168 0.832 39 H 0.171 0.829 40 H 0.256 0.744 41 H 0.249 0.751 42 H 0.229 0.771 43 H 0.111 0.889 44 H 0.132 0.868 45 H 0.082 0.918 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 33.934 -8.401 -14.331 37.782 hybrid contribution -0.917 0.264 -0.276 0.994 sum 33.017 -8.137 -14.607 37.009 Atomic orbital electron populations 1.69910 1.07370 1.26731 1.59693 1.25600 0.96187 1.01612 1.02511 0.85357 0.78817 0.78941 0.78395 1.19881 1.22624 1.16907 1.19032 0.83008 0.93311 1.41467 0.93197 1.42657 1.02217 1.04197 1.90890 1.20796 0.90861 0.87307 0.97730 1.21261 0.93058 0.97474 0.98908 1.21798 0.93701 0.96789 1.03120 1.21605 0.95047 0.96563 0.87376 1.48145 1.34539 1.25041 1.25700 1.20405 0.79274 0.85076 0.83952 1.90698 1.53424 1.27346 1.75024 1.20246 0.94948 0.99974 0.94005 1.23899 0.91995 0.91934 0.91816 1.70545 1.02910 1.28905 1.26996 1.22934 0.89372 0.91235 0.90476 1.68120 1.06212 1.23610 1.23429 1.24663 1.04425 0.83921 0.83947 1.22686 0.89613 1.04335 1.04617 1.23148 0.98597 0.89333 0.88186 1.48849 1.07162 1.29320 1.25926 1.78359 0.96069 1.22639 1.21217 1.22184 0.90384 0.84645 1.04525 1.22002 0.95553 1.01559 0.97424 0.93394 0.79734 0.96429 0.96188 0.90115 0.92289 0.89553 0.90522 0.89660 0.83230 0.82861 0.74396 0.75086 0.77140 0.88860 0.86784 0.91792 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.45 13.97 21.65 0.30 -63.14 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.96 44.18 27.74 68.60 1.90 46.08 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 6 H -0.24 -9.88 6.52 99.48 0.65 -9.23 16 7 C -0.24 -13.55 10.47 84.04 0.88 -12.67 16 8 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 9 N -0.75 -34.06 5.12 -343.45 -1.76 -35.82 16 10 C 0.16 5.84 5.65 86.38 0.49 6.33 16 11 C -0.09 -2.31 2.19 -10.77 -0.02 -2.33 16 12 C -0.12 -2.66 5.36 30.67 0.16 -2.49 16 13 C 0.12 2.57 6.43 86.36 0.56 3.13 16 14 N -0.60 -13.04 2.97 -818.09 -2.43 -15.47 16 15 C 0.53 13.66 7.69 87.65 0.67 14.33 16 16 O -0.58 -20.70 15.45 -3.01 -0.05 -20.75 16 17 C -0.05 -1.02 4.67 29.10 0.14 -0.89 16 18 C 0.29 7.99 6.59 138.69 0.91 8.90 16 19 N -0.56 -17.51 11.25 -191.24 -2.15 -19.66 16 20 C 0.42 11.20 8.99 261.60 2.35 13.55 16 21 N -0.50 -9.89 10.48 -197.63 -2.07 -11.96 16 22 C 0.21 1.23 11.27 85.20 0.96 2.19 16 23 C -0.19 -0.22 10.06 22.14 0.22 0.00 16 24 C 0.14 1.35 11.32 83.48 0.94 2.29 16 25 N -0.33 -7.51 3.91 -197.71 -0.77 -8.28 16 26 N -0.35 -9.70 12.78 -51.44 -0.66 -10.36 16 27 C 0.10 1.74 6.37 86.51 0.55 2.30 16 28 C -0.13 -2.92 5.26 30.82 0.16 -2.76 16 29 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 30 H 0.37 15.39 4.70 -92.71 -0.44 14.95 16 31 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 36 H 0.08 1.95 7.01 -2.39 -0.02 1.94 16 37 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.15 2.21 7.70 -2.38 -0.02 2.19 16 39 H 0.15 2.25 7.93 -2.39 -0.02 2.23 16 40 H 0.24 -1.23 8.06 -2.91 -0.02 -1.26 16 41 H 0.23 -2.40 8.06 -2.91 -0.02 -2.43 16 42 H 0.21 0.51 8.06 -2.91 -0.02 0.49 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.11 1.27 5.93 -2.39 -0.01 1.26 16 45 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.08 1.89 7.15 -2.39 -0.02 1.87 16 Total: -1.00 -96.82 378.32 2.29 -94.53 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 0.52 Total: 16.47 kcal Atomic # 6 Polarization: 18.92 SS G_CDS: 9.45 Total: 28.37 kcal Atomic # 7 Polarization: -155.16 SS G_CDS: -9.54 Total: -164.70 kcal Atomic # 8 Polarization: -20.70 SS G_CDS: -0.05 Total: -20.75 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 1.90 Total: 46.08 kcal Total: -96.82 2.29 -94.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206927760.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.520 kcal (2) G-P(sol) polarization free energy of solvation -96.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.530 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds