Wall clock time and date at job start Wed Apr 1 2020 03:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47108 * 2 1 4 4 F 1.39906 * 109.46952 * 119.99614 * 2 1 3 5 5 C 1.52999 * 109.47061 * 239.99798 * 2 1 3 6 6 C 1.52999 * 109.46873 * 175.00044 * 5 2 1 7 7 N 1.46898 * 109.46951 * 179.97438 * 6 5 2 8 8 C 1.48314 * 111.00163 * 53.67098 * 7 6 5 9 9 C 1.54134 * 107.06067 * 144.77625 * 8 7 6 10 10 C 1.55559 * 104.84860 * 0.60756 * 9 8 7 11 11 H 1.09008 * 113.01356 * 215.19174 * 10 9 8 12 12 C 1.53106 * 106.42741 * 91.65164 * 10 9 8 13 13 C 1.53303 * 110.62358 * 194.31700 * 12 10 9 14 14 N 1.47172 * 107.62195 * 57.79357 * 13 12 10 15 15 C 1.34777 * 121.28198 * 122.34963 * 14 13 12 16 16 O 1.21283 * 120.00463 * 179.72117 * 15 14 13 17 17 C 1.50700 * 119.99675 * 359.44240 * 15 14 13 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00584 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47012 * 89.99727 * 23 21 19 25 25 H 1.48501 * 109.47302 * 209.99797 * 23 21 19 26 26 H 1.48501 * 109.46788 * 330.00118 * 23 21 19 27 27 C 1.46736 * 117.44324 * 302.07374 * 14 13 12 28 28 C 1.47540 * 110.99855 * 170.00267 * 7 6 5 29 29 H 1.08995 * 108.19653 * 314.95702 * 28 7 6 30 30 H 1.09001 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47449 * 300.00426 * 1 2 3 32 32 H 1.09003 * 109.47187 * 60.00108 * 1 2 3 33 33 H 1.08997 * 109.47484 * 55.00150 * 5 2 1 34 34 H 1.08997 * 109.46823 * 294.99833 * 5 2 1 35 35 H 1.09008 * 109.47204 * 60.00176 * 6 5 2 36 36 H 1.09001 * 109.47566 * 300.00207 * 6 5 2 37 37 H 1.08997 * 109.91149 * 25.41941 * 8 7 6 38 38 H 1.08994 * 110.07845 * 264.22240 * 8 7 6 39 39 H 1.09003 * 110.36393 * 241.76465 * 9 8 7 40 40 H 1.09001 * 110.36489 * 119.45220 * 9 8 7 41 41 H 1.09004 * 109.23311 * 314.75286 * 12 10 9 42 42 H 1.09002 * 109.23376 * 74.12981 * 12 10 9 43 43 H 1.08999 * 109.92907 * 298.26625 * 13 12 10 44 44 H 1.09004 * 109.88597 * 177.29859 * 13 12 10 45 45 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 46 46 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 47 47 H 0.97003 * 120.00297 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.19763 * 173.03751 * 27 14 13 49 49 H 1.08997 * 109.19413 * 292.35589 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6595 1.1424 5 6 2.0399 -0.7213 -1.2492 6 6 3.5648 -0.6133 -1.3136 7 7 4.0545 -1.3064 -2.5127 8 6 3.3696 -0.8095 -3.7308 9 6 4.4057 -0.8287 -4.8718 10 6 5.7058 -1.3813 -4.2204 11 1 6.6109 -0.9276 -4.6243 12 6 5.6805 -2.8987 -4.4230 13 6 6.7187 -3.5808 -3.5247 14 7 6.4132 -3.2139 -2.1326 15 6 6.1677 -4.1543 -1.1988 16 8 5.9233 -3.8260 -0.0571 17 6 6.1907 -5.6134 -1.5747 18 16 5.8179 -6.6182 -0.1162 19 6 5.9085 -8.2295 -0.8232 20 1 6.1408 -8.3470 -1.8714 21 6 5.6824 -9.3480 -0.0330 22 7 5.4008 -9.2050 1.2449 23 14 5.7792 -11.0563 -0.7825 24 1 7.1693 -11.5669 -0.6728 25 1 4.8584 -11.9680 -0.0571 26 1 5.3870 -10.9920 -2.2133 27 6 6.3922 -1.7852 -1.7988 28 6 5.4851 -1.0252 -2.7386 29 1 5.6475 0.0440 -2.6029 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -0.2618 -2.1370 34 1 1.7516 -1.7715 -1.2055 35 1 3.9994 -1.0729 -0.4258 36 1 3.8532 0.4369 -1.3573 37 1 3.0150 0.2083 -3.5682 38 1 2.5308 -1.4594 -3.9799 39 1 4.5707 0.1797 -5.2514 40 1 4.0740 -1.4875 -5.6743 41 1 4.6876 -3.2769 -4.1794 42 1 5.9047 -3.1256 -5.4652 43 1 7.7194 -3.2364 -3.7858 44 1 6.6578 -4.6627 -3.6430 45 1 5.4439 -5.8018 -2.3462 46 1 7.1785 -5.8756 -1.9536 47 1 5.2424 -9.9865 1.7971 48 1 6.0341 -1.6611 -0.7767 49 1 7.4030 -1.3844 -1.8753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222305930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:39 Heat of formation + Delta-G solvation = -87.031619 kcal Electronic energy + Delta-G solvation = -29056.507973 eV Core-core repulsion = 25058.608255 eV Total energy + Delta-G solvation = -3997.899718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -47.65963 -40.66715 -38.65528 -36.09829 -34.52169 -32.83002 -32.36367 -31.15038 -30.02326 -28.67709 -27.88531 -25.46586 -24.69754 -23.63064 -22.97641 -21.75563 -20.32951 -20.27938 -18.59806 -17.63452 -16.81625 -16.58749 -16.26411 -15.91904 -15.49003 -15.30201 -14.98468 -14.92351 -14.74838 -14.20083 -14.08489 -13.83356 -13.64768 -13.36223 -13.16122 -12.94110 -12.70174 -12.61858 -12.46754 -12.38657 -12.32654 -11.88759 -11.81405 -11.72053 -11.57161 -11.12624 -11.01680 -10.96956 -10.95047 -10.87466 -10.83900 -10.70599 -10.56209 -10.42105 -9.73473 -9.19227 -9.00522 -8.52939 -8.31878 -8.12660 -6.41258 -6.15090 -3.84551 3.05177 3.24612 3.26415 3.31149 3.35003 3.61370 3.73210 4.19808 4.26649 4.33783 4.46808 4.50632 4.55607 4.63369 4.72644 4.85728 4.94884 5.01530 5.03765 5.07141 5.19054 5.19720 5.22908 5.28342 5.30307 5.38676 5.40400 5.48727 5.53790 5.61091 5.64491 5.67568 5.72859 5.75333 5.76785 5.81118 5.87266 5.96806 5.99907 6.03433 6.05947 6.22469 6.28519 6.69150 6.79602 6.95210 7.65440 7.76242 8.41451 8.75461 9.29938 10.92293 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.003144 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.196186 B = 8904.824887 C =10556.083395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.090 3.910 3 H 0.078 0.922 4 F -0.209 7.209 5 C -0.146 4.146 6 C 0.046 3.954 7 N -0.499 5.499 8 C 0.034 3.966 9 C -0.129 4.129 10 C -0.083 4.083 11 H 0.088 0.912 12 C -0.123 4.123 13 C 0.109 3.891 14 N -0.608 5.608 15 C 0.541 3.459 16 O -0.518 6.518 17 C -0.148 4.148 18 S -0.060 6.060 19 C -0.534 4.534 20 H 0.071 0.929 21 C 0.073 3.927 22 N -0.868 5.868 23 Si 0.917 3.083 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.128 3.872 28 C 0.059 3.941 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.032 0.968 37 H 0.043 0.957 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.079 0.921 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.089 0.911 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.268 0.732 48 H 0.092 0.908 49 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.828 22.743 -13.936 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.053 3.947 3 H 0.096 0.904 4 F -0.190 7.190 5 C -0.183 4.183 6 C -0.082 4.082 7 N -0.223 5.223 8 C -0.094 4.094 9 C -0.167 4.167 10 C -0.102 4.102 11 H 0.106 0.894 12 C -0.161 4.161 13 C -0.014 4.014 14 N -0.344 5.344 15 C 0.329 3.671 16 O -0.392 6.392 17 C -0.298 4.298 18 S 0.166 5.834 19 C -0.682 4.682 20 H 0.090 0.910 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.197 1.197 27 C 0.004 3.996 28 C -0.050 4.050 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.083 0.917 44 H 0.107 0.893 45 H 0.106 0.894 46 H 0.104 0.896 47 H 0.077 0.923 48 H 0.111 0.889 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -4.341 22.550 -11.921 25.874 hybrid contribution 0.409 -0.542 -1.956 2.070 sum -3.932 22.009 -13.877 26.314 Atomic orbital electron populations 1.22372 0.94357 1.03874 1.03115 1.21506 0.94762 0.95855 0.82570 0.90448 1.92875 1.90165 1.83258 1.52661 1.22260 0.95797 1.03159 0.97129 1.22323 0.94962 0.96028 0.94864 1.64608 1.02468 1.53652 1.01545 1.22947 0.97664 0.98502 0.90261 1.22745 0.95013 1.01044 0.97941 1.22061 0.97581 0.96738 0.93857 0.89415 1.21959 1.01107 0.94052 0.99006 1.21760 0.97695 1.00936 0.81058 1.47854 1.71716 1.05292 1.09510 1.20175 0.75209 0.87070 0.84622 1.90683 1.46949 1.82039 1.19531 1.23518 1.04591 0.94690 1.07021 1.85414 1.91809 0.98589 1.07556 1.22869 1.55511 0.91620 0.98210 0.91041 1.24981 0.94642 0.99235 0.94729 1.70027 1.44603 1.30574 1.05096 0.86190 0.78108 0.82260 0.79062 1.20327 1.20795 1.19719 1.20819 0.97734 0.81012 0.99990 1.22307 0.89485 0.97605 0.95597 0.93215 0.91097 0.91466 0.90949 0.90392 0.89449 0.89337 0.94970 0.93877 0.90363 0.91784 0.90692 0.90245 0.91362 0.91681 0.89280 0.89395 0.89583 0.92260 0.88941 0.91715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.39 9.65 37.16 0.36 -1.03 16 2 C 0.09 0.86 3.96 -26.73 -0.11 0.76 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 4 F -0.21 -2.91 16.76 2.25 0.04 -2.88 16 5 C -0.15 -1.44 4.75 -26.73 -0.13 -1.56 16 6 C 0.05 0.52 4.64 -3.83 -0.02 0.50 16 7 N -0.50 -5.62 4.88 -224.72 -1.10 -6.72 16 8 C 0.03 0.30 5.22 -2.45 -0.01 0.28 16 9 C -0.13 -0.95 6.27 -24.78 -0.16 -1.11 16 10 C -0.08 -0.70 3.57 -88.69 -0.32 -1.02 16 11 H 0.09 0.62 8.14 -51.92 -0.42 0.20 16 12 C -0.12 -1.18 4.90 -26.52 -0.13 -1.31 16 13 C 0.11 1.24 6.39 -3.52 -0.02 1.21 16 14 N -0.61 -9.05 2.96 -173.90 -0.51 -9.56 16 15 C 0.54 10.83 7.74 -10.98 -0.08 10.75 16 16 O -0.52 -12.40 15.32 5.55 0.09 -12.32 16 17 C -0.15 -3.14 4.52 36.01 0.16 -2.97 16 18 S -0.06 -1.69 20.57 -107.50 -2.21 -3.91 16 19 C -0.53 -15.51 9.50 30.94 0.29 -15.22 16 20 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 21 C 0.07 2.13 5.49 -17.43 -0.10 2.03 16 22 N -0.87 -26.65 13.22 55.49 0.73 -25.92 16 23 Si 0.92 21.74 29.55 -169.99 -5.02 16.72 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 27 C 0.13 1.64 6.03 -4.86 -0.03 1.62 16 28 C 0.06 0.61 2.12 -67.79 -0.14 0.47 16 29 H 0.05 0.46 7.77 -51.93 -0.40 0.06 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.08 0.60 6.66 -51.93 -0.35 0.26 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.09 1.27 7.13 -51.92 -0.37 0.90 16 36 H 0.03 0.31 7.84 -51.93 -0.41 -0.10 16 37 H 0.04 0.33 7.15 -51.93 -0.37 -0.04 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.07 0.53 7.76 -51.93 -0.40 0.12 16 41 H 0.08 0.94 7.65 -51.93 -0.40 0.54 16 42 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.06 6.03 -51.93 -0.31 0.74 16 45 H 0.09 1.76 7.81 -51.91 -0.41 1.36 16 46 H 0.09 1.69 7.89 -51.92 -0.41 1.28 16 47 H 0.27 7.63 8.31 -40.82 -0.34 7.30 16 48 H 0.09 1.42 6.04 -51.93 -0.31 1.11 16 49 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 394.76 15.07 5.95 5.95 Total: -1.00 -35.35 394.76 -10.80 -46.15 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -8.34 Total: -0.91 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -0.43 Total: -6.61 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: -0.88 Total: -42.20 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.09 Total: -12.32 kcal Atomic # 9 Polarization: -2.91 SS G_CDS: 0.04 Total: -2.88 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.91 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.35 -10.80 -46.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222305930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.879 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds