Wall clock time and date at job start Wed Apr 1 2020 03:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47108 * 2 1 4 4 F 1.39906 * 109.46952 * 119.99614 * 2 1 3 5 5 C 1.52999 * 109.47061 * 239.99798 * 2 1 3 6 6 C 1.52999 * 109.46873 * 175.00044 * 5 2 1 7 7 N 1.46898 * 109.46951 * 179.97438 * 6 5 2 8 8 C 1.48314 * 111.00163 * 53.67098 * 7 6 5 9 9 C 1.54134 * 107.06067 * 144.77625 * 8 7 6 10 10 C 1.55559 * 104.84860 * 0.60756 * 9 8 7 11 11 H 1.09008 * 113.01356 * 215.19174 * 10 9 8 12 12 C 1.53106 * 106.42741 * 91.65164 * 10 9 8 13 13 C 1.53303 * 110.62358 * 194.31700 * 12 10 9 14 14 N 1.47172 * 107.62195 * 57.79357 * 13 12 10 15 15 C 1.34777 * 121.28198 * 122.34963 * 14 13 12 16 16 O 1.21283 * 120.00463 * 179.72117 * 15 14 13 17 17 C 1.50700 * 119.99675 * 359.44240 * 15 14 13 18 18 S 1.80997 * 109.47151 * 180.27780 * 17 15 14 19 19 C 1.76196 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08005 * 120.00018 * 0.02562 * 19 18 17 21 21 C 1.38799 * 120.00626 * 179.97438 * 19 18 17 22 22 N 1.31633 * 119.99674 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00584 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47012 * 89.99727 * 23 21 19 25 25 H 1.48501 * 109.47302 * 209.99797 * 23 21 19 26 26 H 1.48501 * 109.46788 * 330.00118 * 23 21 19 27 27 C 1.46736 * 117.44324 * 302.07374 * 14 13 12 28 28 C 1.47540 * 110.99855 * 170.00267 * 7 6 5 29 29 H 1.08995 * 108.19653 * 314.95702 * 28 7 6 30 30 H 1.09001 * 109.47254 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47449 * 300.00426 * 1 2 3 32 32 H 1.09003 * 109.47187 * 60.00108 * 1 2 3 33 33 H 1.08997 * 109.47484 * 55.00150 * 5 2 1 34 34 H 1.08997 * 109.46823 * 294.99833 * 5 2 1 35 35 H 1.09008 * 109.47204 * 60.00176 * 6 5 2 36 36 H 1.09001 * 109.47566 * 300.00207 * 6 5 2 37 37 H 1.08997 * 109.91149 * 25.41941 * 8 7 6 38 38 H 1.08994 * 110.07845 * 264.22240 * 8 7 6 39 39 H 1.09003 * 110.36393 * 241.76465 * 9 8 7 40 40 H 1.09001 * 110.36489 * 119.45220 * 9 8 7 41 41 H 1.09004 * 109.23311 * 314.75286 * 12 10 9 42 42 H 1.09002 * 109.23376 * 74.12981 * 12 10 9 43 43 H 1.08999 * 109.92907 * 298.26625 * 13 12 10 44 44 H 1.09004 * 109.88597 * 177.29859 * 13 12 10 45 45 H 1.09009 * 109.47352 * 300.27556 * 17 15 14 46 46 H 1.08998 * 109.47585 * 60.27844 * 17 15 14 47 47 H 0.97003 * 120.00297 * 179.97438 * 22 21 19 48 48 H 1.09003 * 109.19763 * 173.03751 * 27 14 13 49 49 H 1.08997 * 109.19413 * 292.35589 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 9 1.9963 -0.6595 1.1424 5 6 2.0399 -0.7213 -1.2492 6 6 3.5648 -0.6133 -1.3136 7 7 4.0545 -1.3064 -2.5127 8 6 3.3696 -0.8095 -3.7308 9 6 4.4057 -0.8287 -4.8718 10 6 5.7058 -1.3813 -4.2204 11 1 6.6109 -0.9276 -4.6243 12 6 5.6805 -2.8987 -4.4230 13 6 6.7187 -3.5808 -3.5247 14 7 6.4132 -3.2139 -2.1326 15 6 6.1677 -4.1543 -1.1988 16 8 5.9233 -3.8260 -0.0571 17 6 6.1907 -5.6134 -1.5747 18 16 5.8179 -6.6182 -0.1162 19 6 5.9085 -8.2295 -0.8232 20 1 6.1408 -8.3470 -1.8714 21 6 5.6824 -9.3480 -0.0330 22 7 5.4008 -9.2050 1.2449 23 14 5.7792 -11.0563 -0.7825 24 1 7.1693 -11.5669 -0.6728 25 1 4.8584 -11.9680 -0.0571 26 1 5.3870 -10.9920 -2.2133 27 6 6.3922 -1.7852 -1.7988 28 6 5.4851 -1.0252 -2.7386 29 1 5.6475 0.0440 -2.6029 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6054 -0.2618 -2.1370 34 1 1.7516 -1.7715 -1.2055 35 1 3.9994 -1.0729 -0.4258 36 1 3.8532 0.4369 -1.3573 37 1 3.0150 0.2083 -3.5682 38 1 2.5308 -1.4594 -3.9799 39 1 4.5707 0.1797 -5.2514 40 1 4.0740 -1.4875 -5.6743 41 1 4.6876 -3.2769 -4.1794 42 1 5.9047 -3.1256 -5.4652 43 1 7.7194 -3.2364 -3.7858 44 1 6.6578 -4.6627 -3.6430 45 1 5.4439 -5.8018 -2.3462 46 1 7.1785 -5.8756 -1.9536 47 1 5.2424 -9.9865 1.7971 48 1 6.0341 -1.6611 -0.7767 49 1 7.4030 -1.3844 -1.8753 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222305930.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:25:38 Heat of formation + Delta-G solvation = -110.458166 kcal Electronic energy + Delta-G solvation = -29057.523824 eV Core-core repulsion = 25058.608255 eV Total energy + Delta-G solvation = -3998.915570 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.63576 -41.62626 -39.97617 -37.18832 -35.47168 -34.58221 -33.63216 -32.29965 -30.93443 -29.98681 -28.70337 -27.67504 -25.73361 -24.47092 -23.82596 -22.51607 -21.51582 -21.04235 -19.93735 -19.34221 -18.08997 -17.66333 -17.20546 -16.95202 -16.87489 -16.68737 -16.19696 -16.11764 -15.87533 -15.76168 -15.08188 -14.93251 -14.75383 -14.49687 -14.44663 -14.11387 -13.76443 -13.72676 -13.49359 -13.31941 -13.16037 -13.09049 -13.06044 -12.88612 -12.77029 -12.57091 -12.52375 -12.37744 -11.92878 -11.75815 -11.71460 -11.68262 -11.60392 -11.34416 -11.22310 -11.13860 -10.77080 -10.24663 -9.58547 -9.27409 -8.66823 -8.33807 -6.12525 1.26498 1.42662 1.46435 1.57118 1.67149 2.17443 2.28460 2.85195 2.99908 3.28148 3.45202 3.60748 3.72772 3.76092 3.81341 3.83525 3.92084 3.96963 4.15090 4.21515 4.25560 4.27816 4.30414 4.38926 4.43204 4.45404 4.47558 4.50465 4.60895 4.70166 4.73223 4.78549 4.82119 4.87484 4.94009 4.98738 5.04839 5.12517 5.15631 5.19951 5.22850 5.29415 5.41322 5.51513 5.63510 6.02485 6.12524 6.20031 6.40723 7.06667 7.24553 8.75636 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.010314 B = 0.003144 C = 0.002652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2714.196186 B = 8904.824887 C =10556.083395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.079 3.921 3 H 0.103 0.897 4 F -0.240 7.240 5 C -0.136 4.136 6 C 0.052 3.948 7 N -0.528 5.528 8 C 0.033 3.967 9 C -0.121 4.121 10 C -0.077 4.077 11 H 0.115 0.885 12 C -0.117 4.117 13 C 0.099 3.901 14 N -0.594 5.594 15 C 0.536 3.464 16 O -0.572 6.572 17 C -0.118 4.118 18 S -0.155 6.155 19 C -0.545 4.545 20 H 0.082 0.918 21 C 0.012 3.988 22 N -0.912 5.912 23 Si 1.001 2.999 24 H -0.266 1.266 25 H -0.278 1.278 26 H -0.257 1.257 27 C 0.124 3.876 28 C 0.059 3.941 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.042 0.958 36 H 0.053 0.947 37 H 0.059 0.941 38 H 0.070 0.930 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.106 0.894 47 H 0.271 0.729 48 H 0.056 0.944 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.297 24.152 -18.187 30.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.042 3.958 3 H 0.121 0.879 4 F -0.221 7.221 5 C -0.174 4.174 6 C -0.076 4.076 7 N -0.252 5.252 8 C -0.094 4.094 9 C -0.159 4.159 10 C -0.096 4.096 11 H 0.134 0.866 12 C -0.155 4.155 13 C -0.023 4.023 14 N -0.327 5.327 15 C 0.323 3.677 16 O -0.451 6.451 17 C -0.269 4.269 18 S 0.072 5.928 19 C -0.693 4.693 20 H 0.100 0.900 21 C -0.192 4.192 22 N -0.549 5.549 23 Si 0.822 3.178 24 H -0.192 1.192 25 H -0.203 1.203 26 H -0.181 1.181 27 C 0.001 3.999 28 C -0.050 4.050 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.071 0.929 42 H 0.116 0.884 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.118 0.882 46 H 0.124 0.876 47 H 0.080 0.920 48 H 0.075 0.925 49 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -3.801 23.999 -16.239 29.225 hybrid contribution 0.270 -0.853 -0.688 1.129 sum -3.531 23.146 -16.927 28.891 Atomic orbital electron populations 1.22358 0.92746 1.03427 1.04727 1.21891 0.96149 0.96635 0.81096 0.87921 1.92815 1.90707 1.84067 1.54534 1.22195 0.95172 1.01522 0.98548 1.22171 0.95417 0.96549 0.93501 1.64527 1.03452 1.54800 1.02464 1.22986 0.97818 0.99020 0.89560 1.22713 0.93554 1.02386 0.97224 1.22127 0.99421 0.95856 0.92187 0.86650 1.21921 0.98809 0.94799 0.99971 1.22135 1.00109 1.01110 0.78918 1.47853 1.69290 1.05456 1.10145 1.20000 0.75554 0.87328 0.84777 1.90666 1.49908 1.82608 1.21881 1.23306 1.05747 0.94496 1.03354 1.85635 1.92509 1.01169 1.13447 1.23189 1.55726 0.91640 0.98716 0.89968 1.26166 0.93710 1.04261 0.95088 1.70203 1.45649 1.32095 1.06945 0.84927 0.78555 0.75696 0.78626 1.19157 1.20273 1.18084 1.21032 0.99860 0.79897 0.99104 1.22316 0.88425 0.97950 0.96327 0.91383 0.92571 0.90983 0.88197 0.87457 0.92667 0.93927 0.92933 0.92285 0.91176 0.89635 0.90062 0.92937 0.88415 0.88523 0.89970 0.88189 0.87617 0.92018 0.92534 0.89143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.61 9.65 71.98 0.69 -1.91 16 2 C 0.08 1.52 3.96 30.59 0.12 1.64 16 3 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 4 F -0.24 -7.25 16.76 44.97 0.75 -6.49 16 5 C -0.14 -2.73 4.75 30.59 0.15 -2.59 16 6 C 0.05 1.19 4.64 86.30 0.40 1.59 16 7 N -0.53 -11.54 4.88 -864.88 -4.22 -15.77 16 8 C 0.03 0.49 5.22 86.41 0.45 0.94 16 9 C -0.12 -1.27 6.27 31.86 0.20 -1.07 16 10 C -0.08 -0.98 3.57 -9.54 -0.03 -1.02 16 11 H 0.12 0.94 8.14 -2.38 -0.02 0.92 16 12 C -0.12 -1.86 4.90 30.73 0.15 -1.71 16 13 C 0.10 2.00 6.39 86.35 0.55 2.55 16 14 N -0.59 -17.48 2.96 -822.47 -2.43 -19.92 16 15 C 0.54 22.30 7.74 87.66 0.68 22.98 16 16 O -0.57 -29.45 15.32 -3.04 -0.05 -29.49 16 17 C -0.12 -5.13 4.52 71.24 0.32 -4.80 16 18 S -0.15 -9.12 20.57 -56.49 -1.16 -10.28 16 19 C -0.54 -32.26 9.50 67.95 0.65 -31.62 16 20 H 0.08 4.51 7.80 -2.91 -0.02 4.49 16 21 C 0.01 0.72 5.49 84.86 0.47 1.19 16 22 N -0.91 -57.81 13.22 21.65 0.29 -57.52 16 23 Si 1.00 44.67 29.55 68.60 2.03 46.69 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 26 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 27 C 0.12 3.13 6.03 85.72 0.52 3.65 16 28 C 0.06 1.09 2.12 44.51 0.09 1.19 16 29 H 0.07 1.05 7.77 -2.39 -0.02 1.03 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.11 1.47 6.66 -2.39 -0.02 1.46 16 34 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.04 1.36 7.13 -2.38 -0.02 1.34 16 36 H 0.05 0.95 7.84 -2.39 -0.02 0.93 16 37 H 0.06 0.69 7.15 -2.39 -0.02 0.67 16 38 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 39 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.08 0.80 7.76 -2.39 -0.02 0.78 16 41 H 0.05 1.15 7.65 -2.38 -0.02 1.13 16 42 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.08 1.78 6.03 -2.39 -0.01 1.77 16 45 H 0.10 4.06 7.81 -2.39 -0.02 4.04 16 46 H 0.11 4.13 7.89 -2.40 -0.02 4.11 16 47 H 0.27 15.89 8.31 -92.71 -0.77 15.12 16 48 H 0.06 1.86 6.04 -2.39 -0.01 1.85 16 49 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -84.04 394.76 1.53 -82.51 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.92 Total: 19.26 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 5.40 Total: -9.00 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -6.37 Total: -93.20 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.05 Total: -29.49 kcal Atomic # 9 Polarization: -7.25 SS G_CDS: 0.75 Total: -6.49 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.16 Total: -10.28 kcal Total: -84.04 1.53 -82.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222305930.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.946 kcal (2) G-P(sol) polarization free energy of solvation -84.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds