Wall clock time and date at job start Wed Apr 1 2020 04:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86798 * 120.00317 * 2 1 4 4 H 1.48500 * 109.47161 * 275.34683 * 3 2 1 5 5 H 1.48498 * 109.46910 * 35.34892 * 3 2 1 6 6 H 1.48498 * 109.47224 * 155.34389 * 3 2 1 7 7 C 1.38817 * 119.99521 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00087 * 341.19396 * 7 2 1 9 9 N 1.36939 * 119.99438 * 161.20351 * 7 2 1 10 10 C 1.46500 * 119.99837 * 139.41196 * 9 7 2 11 11 C 1.53004 * 109.47515 * 89.99507 * 10 9 7 12 12 C 1.52991 * 109.47385 * 180.02562 * 11 10 9 13 13 N 1.46498 * 109.46991 * 180.02562 * 12 11 10 14 14 C 1.34784 * 120.00120 * 179.97438 * 13 12 11 15 15 O 1.21287 * 119.99398 * 359.97438 * 14 13 12 16 16 C 1.50695 * 120.00015 * 180.02562 * 14 13 12 17 17 N 1.46500 * 109.47015 * 179.97438 * 16 14 13 18 18 C 1.34434 * 126.82712 * 124.99844 * 17 16 14 19 19 N 1.30826 * 108.08099 * 179.97438 * 18 17 16 20 20 C 1.33242 * 109.83001 * 0.02562 * 19 18 17 21 21 N 1.30717 * 108.94313 * 0.26090 * 20 19 18 22 22 C 1.46495 * 120.00139 * 319.40717 * 9 7 2 23 23 C 1.50700 * 109.47221 * 264.85214 * 22 9 7 24 24 C 1.38675 * 120.41908 * 264.77968 * 23 22 9 25 25 C 1.38622 * 118.42170 * 179.78194 * 24 23 22 26 26 C 1.38229 * 119.16267 * 0.51251 * 25 24 23 27 27 N 1.31850 * 120.75947 * 359.72545 * 26 25 24 28 28 C 1.31887 * 121.72871 * 0.02562 * 27 26 25 29 29 H 0.97000 * 119.99697 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47325 * 329.99621 * 10 9 7 31 31 H 1.09000 * 109.47093 * 209.99486 * 10 9 7 32 32 H 1.09003 * 109.46732 * 59.99750 * 11 10 9 33 33 H 1.09009 * 109.47000 * 300.00403 * 11 10 9 34 34 H 1.09003 * 109.47441 * 60.00121 * 12 11 10 35 35 H 1.09000 * 109.47105 * 299.99907 * 12 11 10 36 36 H 0.96996 * 120.00194 * 359.97438 * 13 12 11 37 37 H 1.08998 * 109.47558 * 59.99844 * 16 14 13 38 38 H 1.09000 * 109.47028 * 299.99792 * 16 14 13 39 39 H 1.08003 * 125.95602 * 359.97299 * 18 17 16 40 40 H 1.07993 * 125.52662 * 180.02562 * 20 19 18 41 41 H 1.09001 * 109.46919 * 24.84943 * 22 9 7 42 42 H 1.09004 * 109.47217 * 144.85305 * 22 9 7 43 43 H 1.08008 * 120.78970 * 0.02562 * 24 23 22 44 44 H 1.07997 * 120.42230 * 180.21531 * 25 24 23 45 45 H 1.07992 * 119.62081 * 179.74616 * 26 25 24 46 46 H 1.08005 * 119.61919 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.3849 2.1116 -1.3940 5 1 1.5089 2.6173 0.8100 6 1 3.5997 1.4101 0.5841 7 6 2.0102 -1.2023 -0.0005 8 1 1.5134 -2.1127 0.3006 9 7 3.3248 -1.2337 -0.3827 10 6 4.2806 -2.0686 0.3492 11 6 4.3293 -3.4614 -0.2823 12 6 5.3270 -4.3335 0.4825 13 7 5.3740 -5.6669 -0.1226 14 6 6.1901 -6.6102 0.3880 15 8 6.8858 -6.3550 1.3481 16 6 6.2388 -7.9816 -0.2347 17 7 7.1950 -8.8164 0.4969 18 6 6.9546 -10.0142 1.0578 19 7 8.0627 -10.4318 1.6140 20 6 9.0278 -9.5316 1.4304 21 7 8.5433 -8.5216 0.7566 22 6 3.7754 -0.4325 -1.5234 23 6 3.7700 -1.2826 -2.7677 24 6 4.9284 -1.9182 -3.1889 25 6 4.8754 -2.6937 -4.3367 26 6 3.6809 -2.7983 -5.0244 27 7 2.6000 -2.1757 -4.5971 28 6 2.6124 -1.4337 -3.5069 29 1 -0.4850 0.8401 0.0004 30 1 3.9675 -2.1523 1.3899 31 1 5.2702 -1.6139 0.3029 32 1 4.6424 -3.3777 -1.3230 33 1 3.3397 -3.9161 -0.2360 34 1 5.0135 -4.4172 1.5231 35 1 6.3166 -3.8790 0.4366 36 1 4.8178 -5.8709 -0.8906 37 1 6.5524 -7.8973 -1.2752 38 1 5.2494 -8.4367 -0.1892 39 1 6.0113 -10.5401 1.0506 40 1 10.0441 -9.6201 1.7845 41 1 3.1040 0.4153 -1.6597 42 1 4.7859 -0.0694 -1.3358 43 1 5.8490 -1.8147 -2.6336 44 1 5.7574 -3.2058 -4.6918 45 1 3.6323 -3.3972 -5.9217 46 1 1.7071 -0.9383 -3.1880 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230918609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:11:40 Heat of formation + Delta-G solvation = 98.221923 kcal Electronic energy + Delta-G solvation = -29229.714074 eV Core-core repulsion = 25156.616313 eV Total energy + Delta-G solvation = -4073.097761 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.170 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.98594 -41.02289 -40.66974 -38.25038 -36.36070 -34.99307 -34.13239 -33.55029 -32.77034 -32.15200 -31.65330 -29.27326 -27.61209 -26.91385 -24.30857 -24.15550 -23.19735 -22.88636 -22.69402 -22.19774 -21.33510 -18.89295 -18.47522 -18.28989 -17.87310 -17.52094 -17.05395 -16.86835 -16.73524 -16.30623 -16.11010 -15.82590 -15.52986 -15.32506 -14.97709 -14.87744 -14.60728 -14.52913 -14.30565 -14.27069 -13.86270 -13.73193 -13.57184 -13.15755 -12.92670 -12.74564 -12.65990 -12.52929 -12.34258 -11.90613 -11.68110 -11.63730 -11.39359 -11.00615 -10.77084 -10.69832 -10.52800 -10.50819 -10.27315 -10.14158 -9.77866 -8.75999 -8.19385 -5.64348 0.32901 0.48692 0.69290 1.30911 1.32112 1.42858 1.50724 1.51984 2.03237 2.15757 2.40758 2.89616 3.16243 3.41738 3.53415 3.55562 3.68222 3.74224 4.00760 4.07835 4.08332 4.10800 4.16227 4.20411 4.21048 4.29546 4.41871 4.44861 4.57641 4.63525 4.75650 4.83991 4.91926 4.93051 5.00534 5.25637 5.26019 5.30600 5.35576 5.46773 5.49237 5.52750 5.87840 5.91927 5.97968 6.20490 6.47727 6.97277 7.12365 7.17299 7.18746 7.59535 8.02084 8.99226 Molecular weight = 344.17amu Principal moments of inertia in cm(-1) A = 0.013450 B = 0.002463 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2081.232617 B =11363.602253 C =12597.846373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.014 4.014 3 Si 0.936 3.064 4 H -0.276 1.276 5 H -0.313 1.313 6 H -0.250 1.250 7 C -0.250 4.250 8 H 0.039 0.961 9 N -0.603 5.603 10 C 0.147 3.853 11 C -0.130 4.130 12 C 0.134 3.866 13 N -0.711 5.711 14 C 0.494 3.506 15 O -0.571 6.571 16 C 0.112 3.888 17 N -0.377 5.377 18 C 0.263 3.737 19 N -0.578 5.578 20 C 0.183 3.817 21 N -0.336 5.336 22 C 0.166 3.834 23 C -0.139 4.139 24 C -0.071 4.071 25 C -0.161 4.161 26 C 0.076 3.924 27 N -0.516 5.516 28 C 0.092 3.908 29 H 0.262 0.738 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.047 0.953 34 H 0.050 0.950 35 H 0.065 0.935 36 H 0.417 0.583 37 H 0.147 0.853 38 H 0.181 0.819 39 H 0.267 0.733 40 H 0.234 0.766 41 H 0.042 0.958 42 H 0.078 0.922 43 H 0.152 0.848 44 H 0.170 0.830 45 H 0.179 0.821 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.870 -16.109 -7.421 23.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.211 4.211 3 Si 0.765 3.235 4 H -0.204 1.204 5 H -0.242 1.242 6 H -0.173 1.173 7 C -0.380 4.380 8 H 0.056 0.944 9 N -0.324 5.324 10 C 0.022 3.978 11 C -0.171 4.171 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.280 3.720 15 O -0.449 6.449 16 C -0.013 4.013 17 N -0.168 5.168 18 C -0.033 4.033 19 N -0.305 5.305 20 C -0.119 4.119 21 N -0.163 5.163 22 C 0.041 3.959 23 C -0.144 4.144 24 C -0.098 4.098 25 C -0.180 4.180 26 C -0.082 4.082 27 N -0.225 5.225 28 C -0.064 4.064 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.254 0.746 37 H 0.164 0.836 38 H 0.198 0.802 39 H 0.282 0.718 40 H 0.250 0.750 41 H 0.060 0.940 42 H 0.096 0.904 43 H 0.170 0.830 44 H 0.188 0.812 45 H 0.196 0.804 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 14.842 -15.499 -7.221 22.642 hybrid contribution -0.313 1.233 0.485 1.362 sum 14.529 -14.266 -6.736 21.447 Atomic orbital electron populations 1.69969 1.07736 1.27408 1.53857 1.26106 0.95526 1.01067 0.98373 0.85948 0.79891 0.80358 0.77291 1.20351 1.24164 1.17313 1.18490 0.86296 0.92309 1.40862 0.94359 1.44118 1.05709 1.52851 1.29717 1.20936 0.92562 0.89744 0.94581 1.22196 0.97802 0.96542 1.00512 1.21136 0.99437 0.81817 0.96649 1.45850 1.43720 1.11993 1.34829 1.21143 0.79432 0.87638 0.83820 1.90797 1.43381 1.81748 1.29021 1.21978 0.94724 0.87442 0.97177 1.50155 1.08039 1.16213 1.42423 1.27021 1.00765 0.85067 0.90440 1.70529 1.00451 1.32702 1.26867 1.26492 1.01489 0.87244 0.96704 1.78103 0.91374 1.23858 1.22980 1.20267 0.99084 0.92116 0.84421 1.21676 0.94666 1.00735 0.97278 1.21689 0.97595 0.94433 0.96034 1.22411 1.00163 0.99768 0.95664 1.23258 0.88305 0.96635 1.00027 1.67622 1.32291 1.08231 1.14344 1.22332 0.97453 0.95720 0.90862 0.92868 0.93510 0.91521 0.90588 0.93462 0.93109 0.91667 0.74564 0.83561 0.80159 0.71791 0.74953 0.94012 0.90356 0.82991 0.81237 0.80388 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.89 13.97 21.65 0.30 -56.59 16 2 C -0.01 -0.75 5.31 84.86 0.45 -0.30 16 3 Si 0.94 43.53 24.94 68.60 1.71 45.24 16 4 H -0.28 -12.35 6.73 99.48 0.67 -11.68 16 5 H -0.31 -15.11 7.11 99.48 0.71 -14.41 16 6 H -0.25 -10.75 7.11 99.48 0.71 -10.05 16 7 C -0.25 -12.99 9.92 84.03 0.83 -12.16 16 8 H 0.04 2.27 8.06 -2.91 -0.02 2.24 16 9 N -0.60 -24.75 2.03 -706.33 -1.43 -26.18 16 10 C 0.15 4.82 5.71 86.38 0.49 5.31 16 11 C -0.13 -3.45 5.53 30.59 0.17 -3.28 16 12 C 0.13 3.09 5.67 86.38 0.49 3.58 16 13 N -0.71 -12.09 5.56 -463.07 -2.57 -14.66 16 14 C 0.49 9.71 7.87 87.65 0.69 10.40 16 15 O -0.57 -18.02 15.73 -3.05 -0.05 -18.07 16 16 C 0.11 1.06 7.03 85.63 0.60 1.66 16 17 N -0.38 -6.50 3.41 -355.81 -1.21 -7.71 16 18 C 0.26 3.70 12.63 180.36 2.28 5.98 16 19 N -0.58 -11.91 11.19 -204.00 -2.28 -14.19 16 20 C 0.18 3.93 13.03 180.76 2.36 6.29 16 21 N -0.34 -8.28 11.80 -61.25 -0.72 -9.00 16 22 C 0.17 6.17 4.47 85.63 0.38 6.55 16 23 C -0.14 -4.60 5.02 -19.77 -0.10 -4.69 16 24 C -0.07 -1.69 7.83 22.47 0.18 -1.51 16 25 C -0.16 -3.14 10.11 22.36 0.23 -2.91 16 26 C 0.08 1.82 11.18 84.69 0.95 2.77 16 27 N -0.52 -17.58 10.36 -195.85 -2.03 -19.61 16 28 C 0.09 3.53 10.88 84.67 0.92 4.45 16 29 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 30 H 0.05 1.66 8.04 -2.39 -0.02 1.64 16 31 H 0.07 1.85 7.94 -2.39 -0.02 1.83 16 32 H 0.08 1.86 5.55 -2.39 -0.01 1.85 16 33 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.42 4.52 8.47 -92.71 -0.79 3.73 16 37 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.18 -0.13 8.09 -2.39 -0.02 -0.15 16 39 H 0.27 0.60 8.06 -2.91 -0.02 0.58 16 40 H 0.23 3.45 8.06 -2.91 -0.02 3.43 16 41 H 0.04 1.78 3.66 -2.39 -0.01 1.77 16 42 H 0.08 2.43 7.89 -2.38 -0.02 2.41 16 43 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 44 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 45 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 46 H 0.12 5.24 8.06 -2.91 -0.02 5.21 16 Total: -1.00 -86.26 389.05 2.82 -83.44 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.19 Total: 15.21 kcal Atomic # 6 Polarization: 11.20 SS G_CDS: 10.91 Total: 22.11 kcal Atomic # 7 Polarization: -137.99 SS G_CDS: -9.95 Total: -147.94 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.05 Total: -18.07 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 1.71 Total: 45.24 kcal Total: -86.26 2.82 -83.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230918609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.664 kcal (2) G-P(sol) polarization free energy of solvation -86.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds